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MS000654 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS000654
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionRNase H domain-containing protein
Genome locationscaffold93:1084083..1084397
RNA-Seq ExpressionMS000654
SyntenyMS000654
Gene Ontology termsGO:0016020 - membrane (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF7802595.1 putative ribonuclease H protein At1g65750 family [Senna tora]6.9e-1042.16Show/hide
Query:  PAAPFFKVNVDVAVKENVGTGVGVLFRDAAGFVLLAAVRPLRFVPSVDWAECFAVYEGLRLAVEAGFYQLQIETDSLRIFNLLESGCEDESEIGVLGSAI
        P APF K+NVD A+K N    +G L RD  G+VL A    L  +  V  AE  AV  G+ +A+E G   L +E DS  +  +L SGCE  S +  L S+I
Subjt:  PAAPFFKVNVDVAVKENVGTGVGVLFRDAAGFVLLAAVRPLRFVPSVDWAECFAVYEGLRLAVEAGFYQLQIETDSLRIFNLLESGCEDESEIGVLGSAI

Query:  QA
         A
Subjt:  QA

KAF7830925.1 ribonuclease H [Senna tora]2.4e-1043.14Show/hide
Query:  PAAPFFKVNVDVAVKENVGTGVGVLFRDAAGFVLLAAVRPLRFVPSVDWAECFAVYEGLRLAVEAGFYQLQIETDSLRIFNLLESGCEDESEIGVLGSAI
        P APF K+NVD A K N    +G L RD  G+VL A    L  +  V  AE  AV  G+ +A+E G   LQ+E DS  +  +L SGCE  S +  L S+I
Subjt:  PAAPFFKVNVDVAVKENVGTGVGVLFRDAAGFVLLAAVRPLRFVPSVDWAECFAVYEGLRLAVEAGFYQLQIETDSLRIFNLLESGCEDESEIGVLGSAI

Query:  QA
         A
Subjt:  QA

XP_022135916.1 uncharacterized protein LOC111007754 [Momordica charantia]5.8e-1754.84Show/hide
Query:  PPAAPFFKVNVDVAVKENVGTGVGVLFRDAAGFVLLAAVRPLRFVPSVDWAECFAVYEGLRLAVEAGF-------YQLQIETDSLRIFNLLES
        PP  PF KVNVD AV +  G GVGV+ RD+ G V LAAV PL F+PSVDWAECFAV++GLRL VEAG        Y+        RIF+ + S
Subjt:  PPAAPFFKVNVDVAVKENVGTGVGVLFRDAAGFVLLAAVRPLRFVPSVDWAECFAVYEGLRLAVEAGF-------YQLQIETDSLRIFNLLES

XP_022135942.1 uncharacterized protein LOC111007775 [Momordica charantia]1.3e-1955.34Show/hide
Query:  PPAAPFFKVNVDVAVKE-NVGTGVGVLFRDAAGFVLLAAVRPLRFVPSVDWAECFAVYEGLRLAVEAGFYQLQIETDSLRIFNLLESGCEDESEIGVLGS
        PP APFFKVNVD A K+ N   G+ +L RD+   VLL+A+  +  V  V  AEC A  EG+ LA+EAG    QIETDS ++FNLL + CEDESEIGVL S
Subjt:  PPAAPFFKVNVDVAVKE-NVGTGVGVLFRDAAGFVLLAAVRPLRFVPSVDWAECFAVYEGLRLAVEAGFYQLQIETDSLRIFNLLESGCEDESEIGVLGS

Query:  AIQ
        +I+
Subjt:  AIQ

XP_022150944.1 uncharacterized protein LOC111018973 [Momordica charantia]9.9e-2561.9Show/hide
Query:  PPAAPFFKVNVDVAV-KENVGTGVGVLFRDAAGFVLLAAVRPLRFVPSVDWAECFAVYEGLRLAVEAGFYQLQIETDSLRIFNLLESGCEDESEIGVLGS
        PPAAP  KVNVD A  KE+   GVGV+ RD+ G V L A+R L     VDW E FAVYEG+ LAVEAGF + QIETDSLRIFNLL + C D+SE+GVL S
Subjt:  PPAAPFFKVNVDVAV-KENVGTGVGVLFRDAAGFVLLAAVRPLRFVPSVDWAECFAVYEGLRLAVEAGFYQLQIETDSLRIFNLLESGCEDESEIGVLGS

Query:  AIQAF
         I+ F
Subjt:  AIQAF

TrEMBL top hitse value%identityAlignment
A0A6J1C225 uncharacterized protein LOC1110077542.8e-1754.84Show/hide
Query:  PPAAPFFKVNVDVAVKENVGTGVGVLFRDAAGFVLLAAVRPLRFVPSVDWAECFAVYEGLRLAVEAGF-------YQLQIETDSLRIFNLLES
        PP  PF KVNVD AV +  G GVGV+ RD+ G V LAAV PL F+PSVDWAECFAV++GLRL VEAG        Y+        RIF+ + S
Subjt:  PPAAPFFKVNVDVAVKENVGTGVGVLFRDAAGFVLLAAVRPLRFVPSVDWAECFAVYEGLRLAVEAGF-------YQLQIETDSLRIFNLLES

A0A6J1C467 uncharacterized protein LOC1110077756.1e-2055.34Show/hide
Query:  PPAAPFFKVNVDVAVKE-NVGTGVGVLFRDAAGFVLLAAVRPLRFVPSVDWAECFAVYEGLRLAVEAGFYQLQIETDSLRIFNLLESGCEDESEIGVLGS
        PP APFFKVNVD A K+ N   G+ +L RD+   VLL+A+  +  V  V  AEC A  EG+ LA+EAG    QIETDS ++FNLL + CEDESEIGVL S
Subjt:  PPAAPFFKVNVDVAVKE-NVGTGVGVLFRDAAGFVLLAAVRPLRFVPSVDWAECFAVYEGLRLAVEAGFYQLQIETDSLRIFNLLESGCEDESEIGVLGS

Query:  AIQ
        +I+
Subjt:  AIQ

A0A6J1CDQ4 uncharacterized protein LOC1110105332.6e-0741.84Show/hide
Query:  PPAAPFFKVNVDV---AVKENVGTGVGVLFRDAAGFVLLAAVRPLRFVPSVDWAECFAVYEGLRLAVEAGFYQLQIETDSLRIFNLLESGCEDESEIG
        P     FK+  D    ++  N G GV ++ RD  G VL +A + L  V SVD AE  A  EGLR+A+E G   + +ETDSLRI+NL     E  S+ G
Subjt:  PPAAPFFKVNVDV---AVKENVGTGVGVLFRDAAGFVLLAAVRPLRFVPSVDWAECFAVYEGLRLAVEAGFYQLQIETDSLRIFNLLESGCEDESEIG

A0A6J1CIF1 uncharacterized protein LOC1110112376.9e-0838.54Show/hide
Query:  PPAAPFFKVNVDVA-VKENVGTGVGVLFRDAAGFVLLAAVRPLRFVPSVDWAECFAVYEGLRLAVEAGFYQLQIETDSLRIFNLLESGCEDESEIG
        PP    +K+N D + +  +   G+G++ R+  G V+ +A + L  + SVD AE     EGL+LA + G   + +ETDS RIFNL     ED SE G
Subjt:  PPAAPFFKVNVDVA-VKENVGTGVGVLFRDAAGFVLLAAVRPLRFVPSVDWAECFAVYEGLRLAVEAGFYQLQIETDSLRIFNLLESGCEDESEIG

A0A6J1DBJ7 uncharacterized protein LOC1110189734.8e-2561.9Show/hide
Query:  PPAAPFFKVNVDVAV-KENVGTGVGVLFRDAAGFVLLAAVRPLRFVPSVDWAECFAVYEGLRLAVEAGFYQLQIETDSLRIFNLLESGCEDESEIGVLGS
        PPAAP  KVNVD A  KE+   GVGV+ RD+ G V L A+R L     VDW E FAVYEG+ LAVEAGF + QIETDSLRIFNLL + C D+SE+GVL S
Subjt:  PPAAPFFKVNVDVAV-KENVGTGVGVLFRDAAGFVLLAAVRPLRFVPSVDWAECFAVYEGLRLAVEAGFYQLQIETDSLRIFNLLESGCEDESEIGVLGS

Query:  AIQAF
         I+ F
Subjt:  AIQAF

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
CCTCCGGCGGCTCCTTTCTTTAAAGTTAATGTGGATGTCGCGGTCAAGGAGAATGTCGGGACGGGTGTGGGTGTTCTCTTCCGGGATGCTGCTGGGTTTGTTCTCCTTGC
GGCTGTGCGCCCCCTGCGTTTTGTTCCAAGTGTGGATTGGGCTGAATGTTTTGCGGTTTATGAAGGCCTTCGTCTAGCTGTGGAGGCTGGGTTTTATCAGCTTCAGATCG
AAACCGATTCCCTTCGGATCTTTAACTTGCTGGAGTCGGGTTGTGAGGATGAGTCGGAGATTGGGGTGCTGGGTAGTGCTATCCAAGCTTTCCGT
mRNA sequenceShow/hide mRNA sequence
CCTCCGGCGGCTCCTTTCTTTAAAGTTAATGTGGATGTCGCGGTCAAGGAGAATGTCGGGACGGGTGTGGGTGTTCTCTTCCGGGATGCTGCTGGGTTTGTTCTCCTTGC
GGCTGTGCGCCCCCTGCGTTTTGTTCCAAGTGTGGATTGGGCTGAATGTTTTGCGGTTTATGAAGGCCTTCGTCTAGCTGTGGAGGCTGGGTTTTATCAGCTTCAGATCG
AAACCGATTCCCTTCGGATCTTTAACTTGCTGGAGTCGGGTTGTGAGGATGAGTCGGAGATTGGGGTGCTGGGTAGTGCTATCCAAGCTTTCCGT
Protein sequenceShow/hide protein sequence
PPAAPFFKVNVDVAVKENVGTGVGVLFRDAAGFVLLAAVRPLRFVPSVDWAECFAVYEGLRLAVEAGFYQLQIETDSLRIFNLLESGCEDESEIGVLGSAIQAFR