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MS000659 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS000659
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionMADS-box transcription factor 8-like
Genome locationscaffold93:1248735..1248905
RNA-Seq ExpressionMS000659
SyntenyMS000659
Gene Ontology termsGO:0003677 - DNA binding (molecular function)
GO:0046983 - protein dimerization activity (molecular function)
InterPro domainsIPR002100 - Transcription factor, MADS-box
IPR036879 - Transcription factor, MADS-box superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022155415.1 MADS-box protein FLOWERING LOCUS C-like isoform X1 [Momordica charantia]4.7e-0551.85Show/hide
Query:  VEKEANSHIRWCERQFDSDQRRSRLVKKACKLPLLCDFTLGLVIFANRGRLYEF
        +E   N H+ +C       +RRS L+KKA +L +LCD  LGL+IF NRGRLYEF
Subjt:  VEKEANSHIRWCERQFDSDQRRSRLVKKACKLPLLCDFTLGLVIFANRGRLYEF

XP_022155416.1 MADS-box protein FLOWERING LOCUS C-like isoform X2 [Momordica charantia]4.7e-0551.85Show/hide
Query:  VEKEANSHIRWCERQFDSDQRRSRLVKKACKLPLLCDFTLGLVIFANRGRLYEF
        +E   N H+ +C       +RRS L+KKA +L +LCD  LGL+IF NRGRLYEF
Subjt:  VEKEANSHIRWCERQFDSDQRRSRLVKKACKLPLLCDFTLGLVIFANRGRLYEF

XP_022155417.1 MADS-box transcription factor 8-like isoform X3 [Momordica charantia]4.7e-0551.85Show/hide
Query:  VEKEANSHIRWCERQFDSDQRRSRLVKKACKLPLLCDFTLGLVIFANRGRLYEF
        +E   N H+ +C       +RRS L+KKA +L +LCD  LGL+IF NRGRLYEF
Subjt:  VEKEANSHIRWCERQFDSDQRRSRLVKKACKLPLLCDFTLGLVIFANRGRLYEF

XP_023004227.1 MADS-box protein 04g005320-like [Cucurbita maxima]8.1e-0551.85Show/hide
Query:  VEKEANSHIRWCERQFDSDQRRSRLVKKACKLPLLCDFTLGLVIFANRGRLYEF
        +E   N H+ +C       +RRS L+KKA +L +LCD  +GLVIF NRGRLYEF
Subjt:  VEKEANSHIRWCERQFDSDQRRSRLVKKACKLPLLCDFTLGLVIFANRGRLYEF

XP_023514206.1 MADS-box protein 04g005320-like [Cucurbita pepo subsp. pepo]1.1e-0450Show/hide
Query:  VEKEANSHIRWCERQFDSDQRRSRLVKKACKLPLLCDFTLGLVIFANRGRLYEF
        +E   N H+ +C       +RRS L+KKA +L +LCD  +GLV+F NRGRLYEF
Subjt:  VEKEANSHIRWCERQFDSDQRRSRLVKKACKLPLLCDFTLGLVIFANRGRLYEF

TrEMBL top hitse value%identityAlignment
A0A6J1DME3 MADS-box protein FLOWERING LOCUS C-like isoform X12.3e-0551.85Show/hide
Query:  VEKEANSHIRWCERQFDSDQRRSRLVKKACKLPLLCDFTLGLVIFANRGRLYEF
        +E   N H+ +C       +RRS L+KKA +L +LCD  LGL+IF NRGRLYEF
Subjt:  VEKEANSHIRWCERQFDSDQRRSRLVKKACKLPLLCDFTLGLVIFANRGRLYEF

A0A6J1DPA0 MADS-box transcription factor 8-like isoform X32.3e-0551.85Show/hide
Query:  VEKEANSHIRWCERQFDSDQRRSRLVKKACKLPLLCDFTLGLVIFANRGRLYEF
        +E   N H+ +C       +RRS L+KKA +L +LCD  LGL+IF NRGRLYEF
Subjt:  VEKEANSHIRWCERQFDSDQRRSRLVKKACKLPLLCDFTLGLVIFANRGRLYEF

A0A6J1DRL9 MADS-box protein FLOWERING LOCUS C-like isoform X22.3e-0551.85Show/hide
Query:  VEKEANSHIRWCERQFDSDQRRSRLVKKACKLPLLCDFTLGLVIFANRGRLYEF
        +E   N H+ +C       +RRS L+KKA +L +LCD  LGL+IF NRGRLYEF
Subjt:  VEKEANSHIRWCERQFDSDQRRSRLVKKACKLPLLCDFTLGLVIFANRGRLYEF

A0A6J1H7I9 truncated transcription factor CAULIFLOWER D-like5.1e-0550Show/hide
Query:  VEKEANSHIRWCERQFDSDQRRSRLVKKACKLPLLCDFTLGLVIFANRGRLYEF
        +E   N H+ +C       +RRS L+KKA +L +LCD  +GLV+F NRGRLYEF
Subjt:  VEKEANSHIRWCERQFDSDQRRSRLVKKACKLPLLCDFTLGLVIFANRGRLYEF

A0A6J1KPU7 MADS-box protein 04g005320-like3.9e-0551.85Show/hide
Query:  VEKEANSHIRWCERQFDSDQRRSRLVKKACKLPLLCDFTLGLVIFANRGRLYEF
        +E   N H+ +C       +RRS L+KKA +L +LCD  +GLVIF NRGRLYEF
Subjt:  VEKEANSHIRWCERQFDSDQRRSRLVKKACKLPLLCDFTLGLVIFANRGRLYEF

SwissProt top hitse value%identityAlignment
O04067 Agamous-like MADS-box protein AGL9 homolog3.8e-0553.66Show/hide
Query:  RQFDSDQRRSRLVKKACKLPLLCDFTLGLVIFANRGRLYEF
        RQ    +RR+ L+KKA +L +LCD  + L+IF+NRG+LYEF
Subjt:  RQFDSDQRRSRLVKKACKLPLLCDFTLGLVIFANRGRLYEF

Q03489 Agamous-like MADS-box protein AGL9 homolog3.8e-0553.66Show/hide
Query:  RQFDSDQRRSRLVKKACKLPLLCDFTLGLVIFANRGRLYEF
        RQ    +RR+ L+KKA +L +LCD  + L+IF+NRG+LYEF
Subjt:  RQFDSDQRRSRLVKKACKLPLLCDFTLGLVIFANRGRLYEF

Q38694 Agamous-like MADS-box protein AGL9 homolog7.6e-0656.1Show/hide
Query:  RQFDSDQRRSRLVKKACKLPLLCDFTLGLVIFANRGRLYEF
        RQ    +RR RL+KKA +L +LCD  + L+IF+NRG+LYEF
Subjt:  RQFDSDQRRSRLVKKACKLPLLCDFTLGLVIFANRGRLYEF

Q40168 Floral homeotic protein AGAMOUS2.2e-0542.59Show/hide
Query:  VEKEANSHIRWCERQFDSDQRRSRLVKKACKLPLLCDFTLGLVIFANRGRLYEF
        +E   N  + +C       +RR+ L+KKA +L +LCD  + LV+F+NRGRLYE+
Subjt:  VEKEANSHIRWCERQFDSDQRRSRLVKKACKLPLLCDFTLGLVIFANRGRLYEF

Q9FIS1 MADS-box protein AGL422.2e-0556.1Show/hide
Query:  RQFDSDQRRSRLVKKACKLPLLCDFTLGLVIFANRGRLYEF
        RQ    +RR+ L+KKA +L +LCD  L L+IF+ RGRLYEF
Subjt:  RQFDSDQRRSRLVKKACKLPLLCDFTLGLVIFANRGRLYEF

Arabidopsis top hitse value%identityAlignment
AT1G24260.1 K-box region and MADS-box transcription factor family protein2.7e-0653.66Show/hide
Query:  RQFDSDQRRSRLVKKACKLPLLCDFTLGLVIFANRGRLYEF
        RQ    +RR+ L+KKA +L +LCD  + L+IF+NRG+LYEF
Subjt:  RQFDSDQRRSRLVKKACKLPLLCDFTLGLVIFANRGRLYEF

AT5G62165.1 AGAMOUS-like 421.6e-0656.1Show/hide
Query:  RQFDSDQRRSRLVKKACKLPLLCDFTLGLVIFANRGRLYEF
        RQ    +RR+ L+KKA +L +LCD  L L+IF+ RGRLYEF
Subjt:  RQFDSDQRRSRLVKKACKLPLLCDFTLGLVIFANRGRLYEF

AT5G62165.2 AGAMOUS-like 421.6e-0656.1Show/hide
Query:  RQFDSDQRRSRLVKKACKLPLLCDFTLGLVIFANRGRLYEF
        RQ    +RR+ L+KKA +L +LCD  L L+IF+ RGRLYEF
Subjt:  RQFDSDQRRSRLVKKACKLPLLCDFTLGLVIFANRGRLYEF

AT5G62165.3 AGAMOUS-like 421.6e-0656.1Show/hide
Query:  RQFDSDQRRSRLVKKACKLPLLCDFTLGLVIFANRGRLYEF
        RQ    +RR+ L+KKA +L +LCD  L L+IF+ RGRLYEF
Subjt:  RQFDSDQRRSRLVKKACKLPLLCDFTLGLVIFANRGRLYEF

AT5G62165.4 AGAMOUS-like 421.6e-0656.1Show/hide
Query:  RQFDSDQRRSRLVKKACKLPLLCDFTLGLVIFANRGRLYEF
        RQ    +RR+ L+KKA +L +LCD  L L+IF+ RGRLYEF
Subjt:  RQFDSDQRRSRLVKKACKLPLLCDFTLGLVIFANRGRLYEF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TTCGTTGCGGTGGAAAAGGAGGCGAACAGCCACATACGGTGGTGCGAGCGACAATTTGACAGCGACCAAAGAAGATCTAGACTCGTAAAGAAGGCTTGCAAGCTCCCTTT
GCTTTGTGACTTTACGCTTGGACTCGTCATCTTCGCCAATCGTGGTCGCCTCTACGAGTTT
mRNA sequenceShow/hide mRNA sequence
TTCGTTGCGGTGGAAAAGGAGGCGAACAGCCACATACGGTGGTGCGAGCGACAATTTGACAGCGACCAAAGAAGATCTAGACTCGTAAAGAAGGCTTGCAAGCTCCCTTT
GCTTTGTGACTTTACGCTTGGACTCGTCATCTTCGCCAATCGTGGTCGCCTCTACGAGTTT
Protein sequenceShow/hide protein sequence
FVAVEKEANSHIRWCERQFDSDQRRSRLVKKACKLPLLCDFTLGLVIFANRGRLYEF