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MS000663 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS000663
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Description60S ribosomal protein L38
Genome locationscaffold93:1292494..1297725
RNA-Seq ExpressionMS000663
SyntenyMS000663
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005829 - cytosol (cellular component)
GO:0005840 - ribosome (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR002675 - Ribosomal protein L38e
IPR038464 - Ribosomal protein L38e superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8646721.1 hypothetical protein Csa_005163 [Cucumis sativus]2.9e-5482.43Show/hide
Query:  PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKHDFGYHSQTPLLLLVLDPLVLYFDV-----QPKQIHEIKDFLLT
        PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLK      S  P+ +L L    L   +      PKQIHEIKDFLLT
Subjt:  PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKHDFGYHSQTPLLLLVLDPLVLYFDV-----QPKQIHEIKDFLLT

Query:  ARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPP
        ARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPP
Subjt:  ARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPP

KAF3497693.1 hypothetical protein DY000_02056630 [Brassica cretica]1.9e-5378.77Show/hide
Query:  PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKHDFG--YHSQTPLLLLVLDPLVLYFDVQPKQIHEIKDFLLTARR
        PKQIHEIKDFLLTARRKDARSVKIKRSKD+VKFKVRCS+YLYTLCVFD EKADKLK        + +    +VL  L++   + PKQIHEIKDFLLTARR
Subjt:  PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKHDFG--YHSQTPLLLLVLDPLVLYFDVQPKQIHEIKDFLLTARR

Query:  KDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPG
        KDARSVKIKRSKD+VKFKVRCS+YLYTLCVFD EKADKLKQSLPPG
Subjt:  KDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPG

KAG6512538.1 hypothetical protein ZIOFF_030659 [Zingiber officinale]3.6e-4964.17Show/hide
Query:  PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKHD--------------FGY-------HSQTPLLLLVLDPLVLYF
        PKQIHEIKDFLLTARRKDARSVKIKR KDVVKFKVRCSKYLYTLCVFDSEKA+KLK                 GY        +    L  ++ PL + +
Subjt:  PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKHD--------------FGY-------HSQTPLLLLVLDPLVLYF

Query:  DVQ----------------------PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPG
         V                       PKQIHEIKDFLLTARRKDARSVKIKR KDVVKFKVRCSKYLYTLCVFDSEKA+KLKQSLPPG
Subjt:  DVQ----------------------PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPG

KAG6515258.1 hypothetical protein ZIOFF_025650 [Zingiber officinale]5.6e-5065.38Show/hide
Query:  PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKHD--------------FGY-------HSQTPLLLLVLDPLVLYF
        PKQIHEIKDFLLTARRKDARSVKIKR KDVVKFKVRCSKYLYTLCVFDSEKA+KLK                 GY        +    L  ++ PL  + 
Subjt:  PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKHD--------------FGY-------HSQTPLLLLVLDPLVLYF

Query:  D-----------------VQPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPG
                          + PKQIHEIKDFLLTARRKDARSVKIKR KDVVKFKVRCSKYLYTLCVFDSEKA+KLKQSLPPG
Subjt:  D-----------------VQPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPG

KVH95117.1 Ribosomal protein L38e, partial [Cynara cardunculus var. scolymus]6.2e-5781.08Show/hide
Query:  FDVQPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKHDFGYHSQTPLLLLVLDPLVLYFDVQPKQIHEIKDFLLTA
        F  QPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFD+EKA+KLK           + ++LD +  +F  QPKQIHEIKDFLLTA
Subjt:  FDVQPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKHDFGYHSQTPLLLLVLDPLVLYFDVQPKQIHEIKDFLLTA

Query:  RRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPG
        RRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFD+EKA+KLKQSLPPG
Subjt:  RRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPG

TrEMBL top hitse value%identityAlignment
A0A0D9X019 Uncharacterized protein6.1e-5075.69Show/hide
Query:  PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKHDFGYHSQTPLLLLVLDPLVLYFDVQPKQIHEIKDFLLTARRKD
        PKQIHEIKDFLLTARRKDARSV+IKR+KD VKFKVRCSKYLYTLCVFD++KA+KLK      S  P L +           +PKQIHEIKDFLLTARRKD
Subjt:  PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKHDFGYHSQTPLLLLVLDPLVLYFDVQPKQIHEIKDFLLTARRKD

Query:  ARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPG
        ARSV+IKR+KD VKFKVRCSKYLYTLCVFD++KA+KLKQSLPPG
Subjt:  ARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPG

A0A103XQP8 Ribosomal protein L38e (Fragment)3.0e-5781.08Show/hide
Query:  FDVQPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKHDFGYHSQTPLLLLVLDPLVLYFDVQPKQIHEIKDFLLTA
        F  QPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFD+EKA+KLK           + ++LD +  +F  QPKQIHEIKDFLLTA
Subjt:  FDVQPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKHDFGYHSQTPLLLLVLDPLVLYFDVQPKQIHEIKDFLLTA

Query:  RRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPG
        RRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFD+EKA+KLKQSLPPG
Subjt:  RRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPG

A0A498I9U8 Uncharacterized protein1.3e-3160Show/hide
Query:  PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKHDF---------GYHSQ----------------TPLLLLVLDPL
        PKQIHEIKDFLLTARRKDARSVKIK++KD VKFKV CSKYLYTLCVFDS+KADKLK              H+Q                  L+  + D  
Subjt:  PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKHDF---------GYHSQ----------------TPLLLLVLDPL

Query:  VLYFDVQPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCS
        V      PKQ HE+KDFLLTARRKDA SVK KR  DVVKFKVRC+
Subjt:  VLYFDVQPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCS

A0A4S4DHN9 Uncharacterized protein8.2e-3961.45Show/hide
Query:  PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKHD------------FGYHSQTPLLL----LVLDPLVLYFD----
        PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCS+YLYTLCVFDSEKADKLK              +G + Q+ L         +P     +    
Subjt:  PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKHD------------FGYHSQTPLLL----LVLDPLVLYFD----

Query:  -----VQPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL
              QPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRC+++         E+A  +KQ+L
Subjt:  -----VQPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL

A0A6A2WU09 60S ribosomal protein L382.6e-4052.31Show/hide
Query:  PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKHDFGYHSQTPLLLLVLDPLVLYF---------------------
        PKQIHEIKDFLLTARRKDAR VKIK+S+DVVKFKVRCSKYLYTLC+ D++KADKLK      S  P  LL ++ +  +F                     
Subjt:  PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKHDFGYHSQTPLLLLVLDPLVLYF---------------------

Query:  -----------------DV---QPKQIHEIKDFLLTARR-------------------------------KDARSVKIKRSKDVVKFKVRCSKYLYTLCV
                         DV   +PKQIHEIKDFLLTARR                               KDARSVKIK+S+DVVKFKVRCSKYLYTL V
Subjt:  -----------------DV---QPKQIHEIKDFLLTARR-------------------------------KDARSVKIKRSKDVVKFKVRCSKYLYTLCV

Query:  FDSEKADKLKQSLPPG
         D EKADKLKQSLPPG
Subjt:  FDSEKADKLKQSLPPG

SwissProt top hitse value%identityAlignment
O22860 60S ribosomal protein L383.1e-2795.16Show/hide
Query:  PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPG
        PKQIHEIKDFLLTARRKDARSVKIKRSKD+VKFKVRCS+YLYTLCVFD EKADKLKQSLPPG
Subjt:  PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPG

P46291 60S ribosomal protein L383.8e-2590.32Show/hide
Query:  PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPG
        PKQIHEIKDFLLTARRKDAR+VKIK++KD+VKFKVRCSKYLYTLCV D EKADKLKQSLPPG
Subjt:  PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPG

P63173 60S ribosomal protein L384.4e-2179.03Show/hide
Query:  PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPG
        P++I EIKDFLLTARRKDA+SVKIK++KD VKFKVRCS+YLYTL + D EKA+KLKQSLPPG
Subjt:  PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPG

Q32PB9 60S ribosomal protein L384.4e-2179.03Show/hide
Query:  PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPG
        P++I EIKDFLLTARRKDA+SVKIK++KD VKFKVRCS+YLYTL + D EKA+KLKQSLPPG
Subjt:  PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPG

Q95V84 60S ribosomal protein L382.7e-2385.48Show/hide
Query:  PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPG
        PKQIHEIKDFLLTARRKDA+SVKIK++KD VKFKVRCS+YLYTL + D EKADKLKQSLPPG
Subjt:  PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPG

Arabidopsis top hitse value%identityAlignment
AT2G43460.1 Ribosomal L38e protein family2.2e-2895.16Show/hide
Query:  PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPG
        PKQIHEIKDFLLTARRKDARSVKIKRSKD+VKFKVRCS+YLYTLCVFD EKADKLKQSLPPG
Subjt:  PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPG

AT3G59540.1 Ribosomal L38e protein family2.2e-2895.16Show/hide
Query:  PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPG
        PKQIHEIKDFLLTARRKDARSVKIKRSKD+VKFKVRCS+YLYTLCVFD EKADKLKQSLPPG
Subjt:  PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TTCGATGTGCAGCCGAAGCAAATTCACGAGATCAAAGATTTCCTTCTCACTGCCAGAAGGAAGGATGCACGCTCTGTGAAAATCAAGAGGAGCAAAGATGTCGTCAAGTT
CAAAGTTCGATGTTCCAAATATCTTTATACTCTGTGTGTTTTTGACTCTGAGAAGGCAGACAAGTTGAAGCATGATTTTGGGTATCACTCCCAAACACCCTTATTATTAT
TGGTTCTTGATCCTCTTGTTTTGTATTTCGATGTGCAGCCGAAGCAAATTCACGAGATCAAAGATTTCCTTCTCACTGCCAGAAGGAAGGATGCACGCTCTGTGAAAATC
AAGAGGAGCAAAGATGTCGTCAAGTTCAAAGTTCGATGTTCCAAATATCTTTATACTCTGTGTGTTTTTGACTCTGAGAAGGCAGACAAGTTGAAGCAGTCTCTTCCACC
AGGT
mRNA sequenceShow/hide mRNA sequence
TTCGATGTGCAGCCGAAGCAAATTCACGAGATCAAAGATTTCCTTCTCACTGCCAGAAGGAAGGATGCACGCTCTGTGAAAATCAAGAGGAGCAAAGATGTCGTCAAGTT
CAAAGTTCGATGTTCCAAATATCTTTATACTCTGTGTGTTTTTGACTCTGAGAAGGCAGACAAGTTGAAGCATGATTTTGGGTATCACTCCCAAACACCCTTATTATTAT
TGGTTCTTGATCCTCTTGTTTTGTATTTCGATGTGCAGCCGAAGCAAATTCACGAGATCAAAGATTTCCTTCTCACTGCCAGAAGGAAGGATGCACGCTCTGTGAAAATC
AAGAGGAGCAAAGATGTCGTCAAGTTCAAAGTTCGATGTTCCAAATATCTTTATACTCTGTGTGTTTTTGACTCTGAGAAGGCAGACAAGTTGAAGCAGTCTCTTCCACC
AGGT
Protein sequenceShow/hide protein sequence
FDVQPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKHDFGYHSQTPLLLLVLDPLVLYFDVQPKQIHEIKDFLLTARRKDARSVKI
KRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPG