CuGenDBv2

Gene ID	MS000668
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	RING/U-box superfamily protein
Genome location	scaffold93:1366050..1366553
RNA-Seq Expression	MS000668
Synteny	MS000668
Gene Ontology terms	GO:0016567 - protein ubiquitination (biological process) GO:0110165 - cellular anatomical structure (cellular component) GO:0004842 - ubiquitin-protein transferase activity (molecular function)
InterPro domains	IPR002867 - IBR domain IPR013083 - Zinc finger, RING/FYVE/PHD-type IPR031127 - E3 ubiquitin ligase RBR family IPR044066 - TRIAD supradomain

Homology

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GenBank top hits

e value

%identity

Alignment

XP_006362044.1 PREDICTED: probable E3 ubiquitin-protein ligase RNF217 [Solanum tuberosum]

1.7e-31

40.72

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Query:  CPHIICKDCIAKHINSKLEINAIEITCPGPDCKTVLDPVSFRGIIDDKPYERWLDRLCYAAVSWQKKSYCPYKNCQALVIDECCGGAPSYVTRAACPACK
        C H  C DCI ++I+ KL  N IEI CP P C   LDP+  R ++D + +++W ++LC  +V    + YCP +NC AL++DEC G A    TR+ CP CK
Subjt:  CPHIICKDCIAKHINSKLEINAIEITCPGPDCKTVLDPVSFRGIIDDKPYERWLDRLCYAAVSWQKKSYCPYKNCQALVIDECCGGAPSYVTRAACPACK

Query:  RLFCFLCQTAWHEGRRCNVTRRDFISLNDMLFIEMTLGKKKKLSSCPKCRMYTELVPNLGFCIVKCR
        RLFCF C+  WH   +C  +       ND++F +  L ++KK   CPKCR + +L     F   +CR
Subjt:  RLFCFLCQTAWHEGRRCNVTRRDFISLNDMLFIEMTLGKKKKLSSCPKCRMYTELVPNLGFCIVKCR

XP_009625887.1 probable E3 ubiquitin-protein ligase RNF217 [Nicotiana tomentosiformis]

1.3e-31

41.92

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Query:  CPHIICKDCIAKHINSKLEINAIEITCPGPDCKTVLDPVSFRGIIDDKPYERWLDRLCYAAVSWQKKSYCPYKNCQALVIDECCGGAPSYVTRAACPACK
        C H  C DCI K+I  KLE N   I+CP  +C  +LDP+S R  +D + + +W D LC +A+    + YCP +NC AL++DEC G A     R+ CP CK
Subjt:  CPHIICKDCIAKHINSKLEINAIEITCPGPDCKTVLDPVSFRGIIDDKPYERWLDRLCYAAVSWQKKSYCPYKNCQALVIDECCGGAPSYVTRAACPACK

Query:  RLFCFLCQTAWHEGRRCNVTRRDFISLNDMLFIEMTLGKKKKLSSCPKCRMYTELVPNLGFCIVKCR
        RLFCF C+  WH G RC   R      ND+ F    L K      CP+CR + E +    F  V+CR
Subjt:  RLFCFLCQTAWHEGRRCNVTRRDFISLNDMLFIEMTLGKKKKLSSCPKCRMYTELVPNLGFCIVKCR

XP_016456155.1 PREDICTED: probable E3 ubiquitin-protein ligase RNF217 [Nicotiana tabacum]

1.3e-31

41.92

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Query:  CPHIICKDCIAKHINSKLEINAIEITCPGPDCKTVLDPVSFRGIIDDKPYERWLDRLCYAAVSWQKKSYCPYKNCQALVIDECCGGAPSYVTRAACPACK
        C H  C DCI K+I  KLE N   I+CP  +C  +LDP+S R  +D + + +W D LC +A+    + YCP +NC AL++DEC G A     R+ CP CK
Subjt:  CPHIICKDCIAKHINSKLEINAIEITCPGPDCKTVLDPVSFRGIIDDKPYERWLDRLCYAAVSWQKKSYCPYKNCQALVIDECCGGAPSYVTRAACPACK

Query:  RLFCFLCQTAWHEGRRCNVTRRDFISLNDMLFIEMTLGKKKKLSSCPKCRMYTELVPNLGFCIVKCR
        RLFCF C+  WH G RC   R      ND+ F    L K      CP+CR + E +    F  V+CR
Subjt:  RLFCFLCQTAWHEGRRCNVTRRDFISLNDMLFIEMTLGKKKKLSSCPKCRMYTELVPNLGFCIVKCR

XP_016582061.1 PREDICTED: probable E3 ubiquitin-protein ligase RNF217 [Capsicum annuum]

3.0e-31

37.95

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Query:  CPHIICKDCIAKHINSKLEINAIEITCPGPDCKTVLDPVSFRGIIDDKPYERWLDRLCYAAVSWQKKSYCPYKNCQALVIDECCGGAPSYVTRAACPACK
        C H  C DCI K+I+ K+E N +EI CP  +C   LDP+  R ++  + + +W D+LC + V      YCP KNC  L++DEC G A     ++ CP CK
Subjt:  CPHIICKDCIAKHINSKLEINAIEITCPGPDCKTVLDPVSFRGIIDDKPYERWLDRLCYAAVSWQKKSYCPYKNCQALVIDECCGGAPSYVTRAACPACK

Query:  RLFCFLCQTAWHEGRRCNVTRRDFISLNDMLFIEMTLGKKKKLSSCPKCRMYTELVPNLGFCIVKC
        R FCF C+  WH G +C   RR+ +  ND+ F+   L ++ K   CP+CR++   +    F + +C
Subjt:  RLFCFLCQTAWHEGRRCNVTRRDFISLNDMLFIEMTLGKKKKLSSCPKCRMYTELVPNLGFCIVKC

XP_019261931.1 PREDICTED: probable E3 ubiquitin-protein ligase RNF217 [Nicotiana attenuata]

2.3e-31

41.92

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Query:  CPHIICKDCIAKHINSKLEINAIEITCPGPDCKTVLDPVSFRGIIDDKPYERWLDRLCYAAVSWQKKSYCPYKNCQALVIDECCGGAPSYVTRAACPACK
        C H  C DCI K+I  KLE N   I CP  +C  +LDP+S R ++D + + +W D LC +A+    + YCP +NC AL++DEC G A     R+ CP CK
Subjt:  CPHIICKDCIAKHINSKLEINAIEITCPGPDCKTVLDPVSFRGIIDDKPYERWLDRLCYAAVSWQKKSYCPYKNCQALVIDECCGGAPSYVTRAACPACK

Query:  RLFCFLCQTAWHEGRRCNVTRRDFISLNDMLFIEMTLGKKKKLSSCPKCRMYTELVPNLGFCIVKCR
        RLFCF C+  WH G RC   R      ND+ F    L K      CP+CR + E +    F  V+CR
Subjt:  RLFCFLCQTAWHEGRRCNVTRRDFISLNDMLFIEMTLGKKKKLSSCPKCRMYTELVPNLGFCIVKCR

TrEMBL top hits

e value

%identity

Alignment

A0A0V0HAM4 Putative E3 ubiquitin-protein ligase ARI3-like (Fragment)

6.5e-32

40.12

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Query:  CPHIICKDCIAKHINSKLEINAIEITCPGPDCKTVLDPVSFRGIIDDKPYERWLDRLCYAAVSWQKKSYCPYKNCQALVIDECCGGAPSYVTRAACPACK
        C H  C DCI ++I+ +L  N +EI CP P C   LDP+  R ++D + +++W ++LC  +V    + YCP +NC AL++DEC G A    TR+ CP CK
Subjt:  CPHIICKDCIAKHINSKLEINAIEITCPGPDCKTVLDPVSFRGIIDDKPYERWLDRLCYAAVSWQKKSYCPYKNCQALVIDECCGGAPSYVTRAACPACK

Query:  RLFCFLCQTAWHEGRRCNVTRRDFISLNDMLFIEMTLGKKKKLSSCPKCRMYTELVPNLGFCIVKCR
        RLFCF C+  WH G +C  +       ND+ F +  L ++KK   CPKCR + +L     F   +CR
Subjt:  RLFCFLCQTAWHEGRRCNVTRRDFISLNDMLFIEMTLGKKKKLSSCPKCRMYTELVPNLGFCIVKCR

A0A1S3YVV5 probable E3 ubiquitin-protein ligase RNF217

6.5e-32

41.92

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Query:  CPHIICKDCIAKHINSKLEINAIEITCPGPDCKTVLDPVSFRGIIDDKPYERWLDRLCYAAVSWQKKSYCPYKNCQALVIDECCGGAPSYVTRAACPACK
        C H  C DCI K+I  KLE N   I+CP  +C  +LDP+S R  +D + + +W D LC +A+    + YCP +NC AL++DEC G A     R+ CP CK
Subjt:  CPHIICKDCIAKHINSKLEINAIEITCPGPDCKTVLDPVSFRGIIDDKPYERWLDRLCYAAVSWQKKSYCPYKNCQALVIDECCGGAPSYVTRAACPACK

Query:  RLFCFLCQTAWHEGRRCNVTRRDFISLNDMLFIEMTLGKKKKLSSCPKCRMYTELVPNLGFCIVKCR
        RLFCF C+  WH G RC   R      ND+ F    L K      CP+CR + E +    F  V+CR
Subjt:  RLFCFLCQTAWHEGRRCNVTRRDFISLNDMLFIEMTLGKKKKLSSCPKCRMYTELVPNLGFCIVKCR

A0A1U8HFA4 probable E3 ubiquitin-protein ligase RNF217

1.4e-31

37.95

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Query:  CPHIICKDCIAKHINSKLEINAIEITCPGPDCKTVLDPVSFRGIIDDKPYERWLDRLCYAAVSWQKKSYCPYKNCQALVIDECCGGAPSYVTRAACPACK
        C H  C DCI K+I+ K+E N +EI CP  +C   LDP+  R ++  + + +W D+LC + V      YCP KNC  L++DEC G A     ++ CP CK
Subjt:  CPHIICKDCIAKHINSKLEINAIEITCPGPDCKTVLDPVSFRGIIDDKPYERWLDRLCYAAVSWQKKSYCPYKNCQALVIDECCGGAPSYVTRAACPACK

Query:  RLFCFLCQTAWHEGRRCNVTRRDFISLNDMLFIEMTLGKKKKLSSCPKCRMYTELVPNLGFCIVKC
        R FCF C+  WH G +C   RR+ +  ND+ F+   L ++ K   CP+CR++   +    F + +C
Subjt:  RLFCFLCQTAWHEGRRCNVTRRDFISLNDMLFIEMTLGKKKKLSSCPKCRMYTELVPNLGFCIVKC

A0A2G3AGY0 Uncharacterized protein (Fragment)

1.4e-31

37.95

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Query:  CPHIICKDCIAKHINSKLEINAIEITCPGPDCKTVLDPVSFRGIIDDKPYERWLDRLCYAAVSWQKKSYCPYKNCQALVIDECCGGAPSYVTRAACPACK
        C H  C DCI K+I+ K+E N +EI CP  +C   LDP+  R ++  + + +W D+LC + V      YCP KNC  L++DEC G A     ++ CP CK
Subjt:  CPHIICKDCIAKHINSKLEINAIEITCPGPDCKTVLDPVSFRGIIDDKPYERWLDRLCYAAVSWQKKSYCPYKNCQALVIDECCGGAPSYVTRAACPACK

Query:  RLFCFLCQTAWHEGRRCNVTRRDFISLNDMLFIEMTLGKKKKLSSCPKCRMYTELVPNLGFCIVKC
        R FCF C+  WH G +C   RR+ +  ND+ F+   L ++ K   CP+CR++   +    F + +C
Subjt:  RLFCFLCQTAWHEGRRCNVTRRDFISLNDMLFIEMTLGKKKKLSSCPKCRMYTELVPNLGFCIVKC

A0A2G3BW39 Uncharacterized protein

3.2e-31

37.35

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Query:  CPHIICKDCIAKHINSKLEINAIEITCPGPDCKTVLDPVSFRGIIDDKPYERWLDRLCYAAVSWQKKSYCPYKNCQALVIDECCGGAPSYVTRAACPACK
        C H  C DCI K+I+ K+E N +EI CP  +C   LDP+  R ++  + + +W D+LC + V      YCP KNC  L++DEC G A     ++ CP C+
Subjt:  CPHIICKDCIAKHINSKLEINAIEITCPGPDCKTVLDPVSFRGIIDDKPYERWLDRLCYAAVSWQKKSYCPYKNCQALVIDECCGGAPSYVTRAACPACK

Query:  RLFCFLCQTAWHEGRRCNVTRRDFISLNDMLFIEMTLGKKKKLSSCPKCRMYTELVPNLGFCIVKC
        R FCF C+  WH G +C   RR+ +  ND+ F+   L ++ K   CP+CR++   +    F + +C
Subjt:  RLFCFLCQTAWHEGRRCNVTRRDFISLNDMLFIEMTLGKKKKLSSCPKCRMYTELVPNLGFCIVKC

SwissProt top hits

e value

%identity

Alignment

D3YYI7 Probable E3 ubiquitin-protein ligase RNF217

3.3e-09

21.38

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Query:  CPHIICKDCIAKHINSKLEINAIEITCPGPDCKTVLDPVSFRGIIDDKPYERWLDRLCYAAVSWQKKSYCPYKNCQALVIDECCGGAPSYVT-----RAA
        C   +C++C+  +++S++++  +EI CP  +C   L+  +   ++ +  +E  +    +  +     S  P   C+     +  G  P+        +  
Subjt:  CPHIICKDCIAKHINSKLEINAIEITCPGPDCKTVLDPVSFRGIIDDKPYERWLDRLCYAAVSWQKKSYCPYKNCQALVIDECCGGAPSYVT-----RAA

Query:  CPACKRLFCFLCQTAWHEGRRCNVTRRDFISLNDMLFIEMTLGKKKKLSSCPKCRMYTE
        CP C+ ++CF C + WHEG  C   ++    L      E+  G ++    CPKC+++ +
Subjt:  CPACKRLFCFLCQTAWHEGRRCNVTRRDFISLNDMLFIEMTLGKKKKLSSCPKCRMYTE

Q8TC41 Probable E3 ubiquitin-protein ligase RNF217

1.3e-08

20.75

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Query:  CPHIICKDCIAKHINSKLEINAIEITCPGPDCKTVLDPVSFRGIIDDKPYERWLDRLCYAAVSWQKKSYCPYKNCQALVIDECCGGAPS-----YVTRAA
        C   +C++C+  ++++++++  +EI CP  +C   L+  +   ++ +  +E  +    +  +     S  P   C+     +  G  P+        +  
Subjt:  CPHIICKDCIAKHINSKLEINAIEITCPGPDCKTVLDPVSFRGIIDDKPYERWLDRLCYAAVSWQKKSYCPYKNCQALVIDECCGGAPS-----YVTRAA

Query:  CPACKRLFCFLCQTAWHEGRRCNVTRRDFISLNDMLFIEMTLGKKKKLSSCPKCRMYTE
        CP C+ ++CF C + WHEG  C   ++    L      E+  G ++    CPKC+++ +
Subjt:  CPACKRLFCFLCQTAWHEGRRCNVTRRDFISLNDMLFIEMTLGKKKKLSSCPKCRMYTE

Arabidopsis top hits

e value

%identity

Alignment

AT3G14250.1 RING/U-box superfamily protein

5.6e-28

33.91

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Query:  NCPHIICKDCIAKHINSKLEINAIEITCPGPDCKTVLDPVSFRGIIDDKPYERWLDRLCYAAVSWQKKSYCPYKNCQALVIDECCGGAPSYVTRAACPAC
        NC H  C DC  +++ +K++ NA  I CP  +C  +++P + R +I    ++RW   LC + +S   K YCP+K+C A++++   G A   VT+  C +C
Subjt:  NCPHIICKDCIAKHINSKLEINAIEITCPGPDCKTVLDPVSFRGIIDDKPYERWLDRLCYAAVSWQKKSYCPYKNCQALVIDECCGGAPSYVTRAACPAC

Query:  KRLFCFLCQTAWHEGRRCNV------TRRDFISLNDMLFIEMTLGKKKKLSSCPKCRMYTELVPNLGFCIVKCR
         RLFC  C+  WH G  C+       T++     +D L I+M   K K+   CP C+ Y + V   G   +KCR
Subjt:  KRLFCFLCQTAWHEGRRCNV------TRRDFISLNDMLFIEMTLGKKKKLSSCPKCRMYTELVPNLGFCIVKCR

AT3G53690.1 RING/U-box superfamily protein

1.2e-27

37.14

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Query:  CPHIICKDCIAKHINSKLEINAIEITCPGPDCKTVLDPVSFRGIIDDKPYERWLDRLCYAAVSWQKKSYCPYKNCQALVIDECCGGAPSYVTRAACPACK
        C H  C DC++K+I +KL+ N + I CP   C   L+P   R I+  + ++RW D LC A V   KK YCPYK+C ALV  E    +   +  + CP C 
Subjt:  CPHIICKDCIAKHINSKLEINAIEITCPGPDCKTVLDPVSFRGIIDDKPYERWLDRLCYAAVSWQKKSYCPYKNCQALVIDECCGGAPSYVTRAACPACK

Query:  RLFCFLCQTAWHEGRRC--------NVTRRDFISLNDMLFIEMTLGKKKKLSSCPKCRMYTELVPNLGFCIVKCR
        R+ C  C T WH    C        N   RD I L        T+ K+KK   CP C+ Y E   + G   +KCR
Subjt:  RLFCFLCQTAWHEGRRC--------NVTRRDFISLNDMLFIEMTLGKKKKLSSCPKCRMYTELVPNLGFCIVKCR

Sequences

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CDS sequence

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AATTGCCCTCACATCATCTGCAAAGACTGCATTGCCAAGCACATCAACTCAAAGCTAGAGATCAATGCCATTGAGATCACCTGCCCTGGCCCCGACTGCAAGACGGTTCT
CGACCCAGTCTCCTTCCGTGGCATCATAGATGATAAGCCGTACGAGCGGTGGCTGGACCGCCTCTGCTACGCCGCCGTCTCTTGGCAGAAGAAGAGCTACTGCCCTTACA
AGAACTGCCAGGCTTTGGTGATCGACGAGTGCTGCGGCGGCGCCCCCTCGTATGTGACGAGGGCGGCATGCCCGGCGTGCAAGAGGTTGTTCTGCTTCTTGTGCCAGACG
GCGTGGCACGAAGGCCGGCGGTGCAATGTGACCAGACGGGACTTCATTAGTTTGAATGATATGTTGTTTATAGAAATGACTTTGGGAAAGAAGAAGAAGCTGTCATCGTG
CCCTAAATGTCGGATGTATACCGAGCTTGTCCCGAACCTTGGATTTTGCATCGTCAAATGCAGG

mRNA sequence

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Protein sequence

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NCPHIICKDCIAKHINSKLEINAIEITCPGPDCKTVLDPVSFRGIIDDKPYERWLDRLCYAAVSWQKKSYCPYKNCQALVIDECCGGAPSYVTRAACPACKRLFCFLCQT
AWHEGRRCNVTRRDFISLNDMLFIEMTLGKKKKLSSCPKCRMYTELVPNLGFCIVKCR

MS000668 (gene) of Bitter gourd (TR) v1 genome