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MS000709 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS000709
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionAlpha-farnesene synthase
Genome locationscaffold26:7888..8180
RNA-Seq ExpressionMS000709
SyntenyMS000709
Gene Ontology termsGO:0016102 - diterpenoid biosynthetic process (biological process)
GO:0045338 - farnesyl diphosphate metabolic process (biological process)
GO:0051762 - sesquiterpene biosynthetic process (biological process)
GO:0005737 - cytoplasm (cellular component)
GO:0000287 - magnesium ion binding (molecular function)
GO:0052578 - alpha-farnesene synthase activity (molecular function)
InterPro domainsIPR005630 - Terpene synthase, metal-binding domain
IPR008949 - Isoprenoid synthase domain superfamily
IPR036965 - Terpene synthase, N-terminal domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KGN56187.1 hypothetical protein Csa_010016 [Cucumis sativus]3.4e-2778.67Show/hide
Query:  LPRQETRHYIGLYSEKPWRNEPLFHFAKLDFNHLKKLHQKEIASISKWWEDYGFAEKLLFARNRIVEGYFFALGV
        LPR + RH+IGLYSEKPWRNE L +FAK+DFN L+ LHQ EIA ISKWW+DYGFAEKL FARNRIVEGYFFALG+
Subjt:  LPRQETRHYIGLYSEKPWRNEPLFHFAKLDFNHLKKLHQKEIASISKWWEDYGFAEKLLFARNRIVEGYFFALGV

NP_001267674.1 alpha-farnesene synthase-like [Cucumis sativus]3.4e-2778.67Show/hide
Query:  LPRQETRHYIGLYSEKPWRNEPLFHFAKLDFNHLKKLHQKEIASISKWWEDYGFAEKLLFARNRIVEGYFFALGV
        LPR + RH+IGLYSEKPWRNE L +FAK+DFN L+ LHQ EIA ISKWW+DYGFAEKL FARNRIVEGYFFALG+
Subjt:  LPRQETRHYIGLYSEKPWRNEPLFHFAKLDFNHLKKLHQKEIASISKWWEDYGFAEKLLFARNRIVEGYFFALGV

NP_001284384.1 alpha-farnesene synthase [Cucumis melo]2.0e-2780Show/hide
Query:  LPRQETRHYIGLYSEKPWRNEPLFHFAKLDFNHLKKLHQKEIASISKWWEDYGFAEKLLFARNRIVEGYFFALGV
        LPR +  HYIGLYSEKPWRNE L +FAK+DF+ L+KLHQKEIA ISKWW+DYGFAEKL FARNRIVEGYFFALG+
Subjt:  LPRQETRHYIGLYSEKPWRNEPLFHFAKLDFNHLKKLHQKEIASISKWWEDYGFAEKLLFARNRIVEGYFFALGV

XP_021802041.1 (-)-germacrene D synthase-like [Prunus avium]2.2e-1860Show/hide
Query:  LPRQETRHYIGLYSEKPWRNEPLFHFAKLDFNHLKKLHQKEIASISKWWEDYGFAEKLLFARNRIVEGYFFALGV
        LPR ETRHY+ LY E+  RNE L +FAKLDFN L+++HQ+E++ IS+WW+D  F  KL FAR+R+VE YF+A GV
Subjt:  LPRQETRHYIGLYSEKPWRNEPLFHFAKLDFNHLKKLHQKEIASISKWWEDYGFAEKLLFARNRIVEGYFFALGV

XP_038903296.1 alpha-farnesene synthase-like [Benincasa hispida]4.7e-2982.67Show/hide
Query:  LPRQETRHYIGLYSEKPWRNEPLFHFAKLDFNHLKKLHQKEIASISKWWEDYGFAEKLLFARNRIVEGYFFALGV
        LPR E RHYIGLYSEKPW+NE L +FAK+DFN L+KLHQKEIA IS+WWEDYGFAEKL FARNRIVEGYFFALG+
Subjt:  LPRQETRHYIGLYSEKPWRNEPLFHFAKLDFNHLKKLHQKEIASISKWWEDYGFAEKLLFARNRIVEGYFFALGV

TrEMBL top hitse value%identityAlignment
A0A068B251 Terpene synthase1.1e-1860Show/hide
Query:  LPRQETRHYIGLYSEKPWRNEPLFHFAKLDFNHLKKLHQKEIASISKWWEDYGFAEKLLFARNRIVEGYFFALGV
        LPR ETRHY+ LY E+  RNE L +FAKLDFN L+++HQ+E++ IS+WW+D  F  KL FAR+R+VE YF+A GV
Subjt:  LPRQETRHYIGLYSEKPWRNEPLFHFAKLDFNHLKKLHQKEIASISKWWEDYGFAEKLLFARNRIVEGYFFALGV

A0A0A0L6G4 Uncharacterized protein1.6e-2778.67Show/hide
Query:  LPRQETRHYIGLYSEKPWRNEPLFHFAKLDFNHLKKLHQKEIASISKWWEDYGFAEKLLFARNRIVEGYFFALGV
        LPR + RH+IGLYSEKPWRNE L +FAK+DFN L+ LHQ EIA ISKWW+DYGFAEKL FARNRIVEGYFFALG+
Subjt:  LPRQETRHYIGLYSEKPWRNEPLFHFAKLDFNHLKKLHQKEIASISKWWEDYGFAEKLLFARNRIVEGYFFALGV

A0A1S2XAE3 alpha-farnesene synthase9.6e-2880Show/hide
Query:  LPRQETRHYIGLYSEKPWRNEPLFHFAKLDFNHLKKLHQKEIASISKWWEDYGFAEKLLFARNRIVEGYFFALGV
        LPR +  HYIGLYSEKPWRNE L +FAK+DF+ L+KLHQKEIA ISKWW+DYGFAEKL FARNRIVEGYFFALG+
Subjt:  LPRQETRHYIGLYSEKPWRNEPLFHFAKLDFNHLKKLHQKEIASISKWWEDYGFAEKLLFARNRIVEGYFFALGV

A0A6P5RM66 (-)-germacrene D synthase-like1.1e-1860Show/hide
Query:  LPRQETRHYIGLYSEKPWRNEPLFHFAKLDFNHLKKLHQKEIASISKWWEDYGFAEKLLFARNRIVEGYFFALGV
        LPR ETRHY+ LY E+  RNE L +FAKLDFN L+++HQ+E++ IS+WW+D  F  KL FAR+R+VE YF+A GV
Subjt:  LPRQETRHYIGLYSEKPWRNEPLFHFAKLDFNHLKKLHQKEIASISKWWEDYGFAEKLLFARNRIVEGYFFALGV

Q66PX9 E,E-alpha-farnesene synthase1.6e-2778.67Show/hide
Query:  LPRQETRHYIGLYSEKPWRNEPLFHFAKLDFNHLKKLHQKEIASISKWWEDYGFAEKLLFARNRIVEGYFFALGV
        LPR + RH+IGLYSEKPWRNE L +FAK+DFN L+ LHQ EIA ISKWW+DYGFAEKL FARNRIVEGYFFALG+
Subjt:  LPRQETRHYIGLYSEKPWRNEPLFHFAKLDFNHLKKLHQKEIASISKWWEDYGFAEKLLFARNRIVEGYFFALGV

SwissProt top hitse value%identityAlignment
B2KSJ6 Alpha-farnesene synthase2.6e-3080Show/hide
Query:  LPRQETRHYIGLYSEKPWRNEPLFHFAKLDFNHLKKLHQKEIASISKWWEDYGFAEKLLFARNRIVEGYFFALGV
        LPR +  HYIGLYSEKPWRNE L +FAK+DF+ L+KLHQKEIA ISKWW+DYGFAEKL FARNRIVEGYFFALG+
Subjt:  LPRQETRHYIGLYSEKPWRNEPLFHFAKLDFNHLKKLHQKEIASISKWWEDYGFAEKLLFARNRIVEGYFFALGV

B9SCB6 Probable terpene synthase 21.8e-1858.67Show/hide
Query:  LPRQETRHYIGLYSEKPWRNEPLFHFAKLDFNHLKKLHQKEIASISKWWEDYGFAEKLLFARNRIVEGYFFALGV
        L R E RH+I +Y E    NE L  FAKLDFN L+KLHQKE+  IS WW+D  F  KL F R+R+VEGYF+ LGV
Subjt:  LPRQETRHYIGLYSEKPWRNEPLFHFAKLDFNHLKKLHQKEIASISKWWEDYGFAEKLLFARNRIVEGYFFALGV

P93665 (+)-delta-cadinene synthase3.3e-1750.67Show/hide
Query:  LPRQETRHYIGLYSEKPWRNEPLFHFAKLDFNHLKKLHQKEIASISKWWEDYGFAEKLLFARNRIVEGYFFALGV
        LPR E RHY+ +Y +    N+ L  FAK+DFN ++ LH+KE++ IS+WW+D  F  KL +AR+R+VEGYF+  GV
Subjt:  LPRQETRHYIGLYSEKPWRNEPLFHFAKLDFNHLKKLHQKEIASISKWWEDYGFAEKLLFARNRIVEGYFFALGV

Q49SP5 Germacrene A synthase3.9e-1853.33Show/hide
Query:  LPRQETRHYIGLYSEKPWRNEPLFHFAKLDFNHLKKLHQKEIASISKWWEDYGFAEKLLFARNRIVEGYFFALGV
        +PR E RH+I  Y E+  +NE L  FAKLDFN L+ LH++E++ ISKWW+D     KL +AR+R+VE YF+A+GV
Subjt:  LPRQETRHYIGLYSEKPWRNEPLFHFAKLDFNHLKKLHQKEIASISKWWEDYGFAEKLLFARNRIVEGYFFALGV

Q6Q3H3 (-)-germacrene D synthase3.9e-1857.33Show/hide
Query:  LPRQETRHYIGLYSEKPWRNEPLFHFAKLDFNHLKKLHQKEIASISKWWEDYGFAEKLLFARNRIVEGYFFALGV
        LPR E RHY  +Y      N+ L   AKLDFN L+KLHQKE++ IS WW+D  FA KL FAR+R+VE YF+ LGV
Subjt:  LPRQETRHYIGLYSEKPWRNEPLFHFAKLDFNHLKKLHQKEIASISKWWEDYGFAEKLLFARNRIVEGYFFALGV

Arabidopsis top hitse value%identityAlignment
AT2G24210.1 terpene synthase 102.3e-1342.47Show/hide
Query:  RQETRHYIGLYSEKP-WRNEPLFHFAKLDFNHLKKLHQKEIASISKWWEDYGFAEKLLFARNRIVEGYFFALG
        R  TR YI +Y ++  ++N  +  FAK+DFN ++ +HQ+E+ ++S WW + G  ++L FAR+RIVE YF+ +G
Subjt:  RQETRHYIGLYSEKP-WRNEPLFHFAKLDFNHLKKLHQKEIASISKWWEDYGFAEKLLFARNRIVEGYFFALG

AT3G25810.1 Terpenoid cyclases/Protein prenyltransferases superfamily protein1.5e-1243.84Show/hide
Query:  RQETRHYIGLYSEKPWRNEPLFHFAKLDFNHLKKLHQKEIASISKWWEDYGFAEKLLFARNRIVEGYFFALGV
        R ETR YI  Y +K   N  L  FAK+DFN ++  HQ+++  +S WW++ G   +L F R+RIVE YF+ +G+
Subjt:  RQETRHYIGLYSEKPWRNEPLFHFAKLDFNHLKKLHQKEIASISKWWEDYGFAEKLLFARNRIVEGYFFALGV

AT3G25820.1 terpene synthase-like sequence-1,8-cineole1.5e-1242.47Show/hide
Query:  RQETRHYIGLYSEKPWRNEPLFHFAKLDFNHLKKLHQKEIASISKWWEDYGFAEKLLFARNRIVEGYFFALGV
        R +TR YI  Y +K   N  L  FAK+DFN ++  HQ+++  +S+WW+D     +L F R+RIVE YF+ +G+
Subjt:  RQETRHYIGLYSEKPWRNEPLFHFAKLDFNHLKKLHQKEIASISKWWEDYGFAEKLLFARNRIVEGYFFALGV

AT4G16740.1 terpene synthase 031.7e-1346.58Show/hide
Query:  RQETRHYIGLYSEKPWRNEPLFHFAKLDFNHLKKLHQKEIASISKWWEDYGFAEKLLFARNRIVEGYFFALGV
        R E R YI +Y E+   N  L   AKLDFN ++ +HQ E+ S+S WW   G  + L F R+RI EGYF ++GV
Subjt:  RQETRHYIGLYSEKPWRNEPLFHFAKLDFNHLKKLHQKEIASISKWWEDYGFAEKLLFARNRIVEGYFFALGV

AT4G16740.2 terpene synthase 031.7e-1346.58Show/hide
Query:  RQETRHYIGLYSEKPWRNEPLFHFAKLDFNHLKKLHQKEIASISKWWEDYGFAEKLLFARNRIVEGYFFALGV
        R E R YI +Y E+   N  L   AKLDFN ++ +HQ E+ S+S WW   G  + L F R+RI EGYF ++GV
Subjt:  RQETRHYIGLYSEKPWRNEPLFHFAKLDFNHLKKLHQKEIASISKWWEDYGFAEKLLFARNRIVEGYFFALGV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
CTCCCACGGCAAGAAACCAGGCATTACATTGGTTTGTATAGTGAGAAGCCATGGCGGAATGAGCCTTTGTTTCACTTTGCAAAGTTGGATTTCAACCACTTGAAGAAGCT
TCACCAGAAGGAGATAGCTTCCATCTCCAAGTGGTGGGAAGATTATGGTTTTGCAGAAAAGCTATTGTTTGCACGGAACAGGATCGTGGAGGGTTATTTTTTTGCTCTGG
GTGTT
mRNA sequenceShow/hide mRNA sequence
CTCCCACGGCAAGAAACCAGGCATTACATTGGTTTGTATAGTGAGAAGCCATGGCGGAATGAGCCTTTGTTTCACTTTGCAAAGTTGGATTTCAACCACTTGAAGAAGCT
TCACCAGAAGGAGATAGCTTCCATCTCCAAGTGGTGGGAAGATTATGGTTTTGCAGAAAAGCTATTGTTTGCACGGAACAGGATCGTGGAGGGTTATTTTTTTGCTCTGG
GTGTT
Protein sequenceShow/hide protein sequence
LPRQETRHYIGLYSEKPWRNEPLFHFAKLDFNHLKKLHQKEIASISKWWEDYGFAEKLLFARNRIVEGYFFALGV