CuGenDBv2

Gene ID	MS000714
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Trafficking protein particle complex subunit
Genome location	scaffold26:120088..121018
RNA-Seq Expression	MS000714
Synteny	MS000714
Gene Ontology terms	GO:0006888 - endoplasmic reticulum to Golgi vesicle-mediated transport (biological process) GO:0006891 - intra-Golgi vesicle-mediated transport (biological process) GO:0005783 - endoplasmic reticulum (cellular component) GO:0005829 - cytosol (cellular component) GO:0030008 - TRAPP complex (cellular component) GO:0033106 - cis-Golgi network membrane (cellular component)
InterPro domains	IPR007194 - Transport protein particle (TRAPP) component IPR016721 - Bet3 family IPR024096 - NO signalling/Golgi transport ligand-binding domain superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAE8125627.1 hypothetical protein FH972_020410 [Carpinus fangiana]

1.2e-28

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Query:  VFLGVTASVTNLDAYGTCCSIILDDNPLVVFVG--------SLLNISSGVIRGALEMVSMKSEVTWVRDMLKGDEEFELQIKLLKQVPEEYPYKDD
        +FLGVTASVTN DA GTCCSI+L+DNPLV FV            NI SGVIRGALEMVSMK+EVTWVRDML+GD+ FELQ+KLLKQVPEEYPYKDD
Subjt:  VFLGVTASVTNLDAYGTCCSIILDDNPLVVFVG--------SLLNISSGVIRGALEMVSMKSEVTWVRDMLKGDEEFELQIKLLKQVPEEYPYKDD

PSS08368.1 Trafficking protein particle complex subunit like [Actinidia chinensis var. chinensis]

1.2e-28

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Query:  VFLGVTASVTNLDAYGTCCSIILDDNPLVVFVG--------SLLNISSGVIRGALEMVSMKSEVTWVRDMLKGDEEFELQIKLLKQVPEEYPYKDD
        +FLGVTASVTN DA GTCCS+IL+DNPLV FV            NI SGVIRGALEMVSMK+EVTW+RDMLKGD+ FELQ+KLLKQVPEEYPYKDD
Subjt:  VFLGVTASVTNLDAYGTCCSIILDDNPLVVFVG--------SLLNISSGVIRGALEMVSMKSEVTWVRDMLKGDEEFELQIKLLKQVPEEYPYKDD

XP_024967457.1 trafficking protein particle complex subunit 3-like [Cynara cardunculus var. scolymus]

9.6e-29

72.92

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Query:  VFLGVTASVTNLDAYGTCCSIILDDNPLVVFVG--------SLLNISSGVIRGALEMVSMKSEVTWVRDMLKGDEEFELQIKLLKQVPEEYPYKDD
        +FLGVTASVTN DA GTCCS+ILDDNPLV FV            NI SGV+RGALEMVSMK+E+TW+RDML+GD+ FELQ+KLLKQVPEEYPYKDD
Subjt:  VFLGVTASVTNLDAYGTCCSIILDDNPLVVFVG--------SLLNISSGVIRGALEMVSMKSEVTWVRDMLKGDEEFELQIKLLKQVPEEYPYKDD

XP_028056575.1 trafficking protein particle complex subunit 3-like isoform X2 [Camellia sinensis]

1.2e-28

72.92

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Query:  VFLGVTASVTNLDAYGTCCSIILDDNPLVVFVG--------SLLNISSGVIRGALEMVSMKSEVTWVRDMLKGDEEFELQIKLLKQVPEEYPYKDD
        +FLGVTASVTNLDA GTCCS+IL+DNPLV FV            NI SG+IRGALEMVSMK+EVTW+RDML+GD+ FELQ+KLLKQ+PEEYPYKDD
Subjt:  VFLGVTASVTNLDAYGTCCSIILDDNPLVVFVG--------SLLNISSGVIRGALEMVSMKSEVTWVRDMLKGDEEFELQIKLLKQVPEEYPYKDD

XP_028807749.1 trafficking protein particle complex subunit 3-like [Prosopis alba]

1.2e-28

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Query:  VFLGVTASVTNLDAYGTCCSIILDDNPLVVFVG--------SLLNISSGVIRGALEMVSMKSEVTWVRDMLKGDEEFELQIKLLKQVPEEYPYKDD
        +FLGVTASVTN DA GTCCSI+L+DNPLV FV            NI SGVIRGALEMVSMK+EVTWVRDML+GD+ FELQ+KLLKQVPEEYPYKDD
Subjt:  VFLGVTASVTNLDAYGTCCSIILDDNPLVVFVG--------SLLNISSGVIRGALEMVSMKSEVTWVRDMLKGDEEFELQIKLLKQVPEEYPYKDD

TrEMBL top hits

e value

%identity

Alignment

A0A103YJL5 Trafficking protein particle complex subunit

4.6e-29

72.92

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Query:  VFLGVTASVTNLDAYGTCCSIILDDNPLVVFVG--------SLLNISSGVIRGALEMVSMKSEVTWVRDMLKGDEEFELQIKLLKQVPEEYPYKDD
        +FLGVTASVTN DA GTCCS+ILDDNPLV FV            NI SGV+RGALEMVSMK+E+TW+RDML+GD+ FELQ+KLLKQVPEEYPYKDD
Subjt:  VFLGVTASVTNLDAYGTCCSIILDDNPLVVFVG--------SLLNISSGVIRGALEMVSMKSEVTWVRDMLKGDEEFELQIKLLKQVPEEYPYKDD

A0A2R6QID5 Trafficking protein particle complex subunit

6.0e-29

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Query:  VFLGVTASVTNLDAYGTCCSIILDDNPLVVFVG--------SLLNISSGVIRGALEMVSMKSEVTWVRDMLKGDEEFELQIKLLKQVPEEYPYKDD
        +FLGVTASVTN DA GTCCS+IL+DNPLV FV            NI SGVIRGALEMVSMK+EVTW+RDMLKGD+ FELQ+KLLKQVPEEYPYKDD
Subjt:  VFLGVTASVTNLDAYGTCCSIILDDNPLVVFVG--------SLLNISSGVIRGALEMVSMKSEVTWVRDMLKGDEEFELQIKLLKQVPEEYPYKDD

A0A5N6RUP7 Uncharacterized protein

6.0e-29

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Query:  VFLGVTASVTNLDAYGTCCSIILDDNPLVVFVG--------SLLNISSGVIRGALEMVSMKSEVTWVRDMLKGDEEFELQIKLLKQVPEEYPYKDD
        +FLGVTASVTN DA GTCCSI+L+DNPLV FV            NI SGVIRGALEMVSMK+EVTWVRDML+GD+ FELQ+KLLKQVPEEYPYKDD
Subjt:  VFLGVTASVTNLDAYGTCCSIILDDNPLVVFVG--------SLLNISSGVIRGALEMVSMKSEVTWVRDMLKGDEEFELQIKLLKQVPEEYPYKDD

A0A6P4ATT2 Trafficking protein particle complex subunit

1.3e-28

73.96

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Query:  VFLGVTASVTNLDAYGTCCSIILDDNPLVVFVG--------SLLNISSGVIRGALEMVSMKSEVTWVRDMLKGDEEFELQIKLLKQVPEEYPYKDD
        +FLGVTASVTN DA GTCCSI+L+DNPLV FV            NI SGVIRGALEMVSMK+EVTW+RDML+GD+ FELQ+KLLKQVPEEYPYKDD
Subjt:  VFLGVTASVTNLDAYGTCCSIILDDNPLVVFVG--------SLLNISSGVIRGALEMVSMKSEVTWVRDMLKGDEEFELQIKLLKQVPEEYPYKDD

A0A7J7GDM8 Trafficking protein particle complex subunit

6.0e-29

72.92

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Query:  VFLGVTASVTNLDAYGTCCSIILDDNPLVVFVG--------SLLNISSGVIRGALEMVSMKSEVTWVRDMLKGDEEFELQIKLLKQVPEEYPYKDD
        +FLGVTASVTNLDA GTCCS+IL+DNPLV FV            NI SG+IRGALEMVSMK+EVTW+RDML+GD+ FELQ+KLLKQ+PEEYPYKDD
Subjt:  VFLGVTASVTNLDAYGTCCSIILDDNPLVVFVG--------SLLNISSGVIRGALEMVSMKSEVTWVRDMLKGDEEFELQIKLLKQVPEEYPYKDD

SwissProt top hits

e value

%identity

Alignment

O43617 Trafficking protein particle complex subunit 3

4.6e-10

41.3

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Query:  VFLGVTASVTNLDAYGTCCSIILDDNPLVVFV------GSLL--NISSGVIRGALEMVSMKSEVTWVRDMLKGDEEFELQIKLLKQVPEEYP
        ++LG+T S+TN    G   S+IL++NPLV FV       SL+  N+  GV+RGALEMV M  E  +V+D LKGD   E++++ ++++ +  P
Subjt:  VFLGVTASVTNLDAYGTCCSIILDDNPLVVFV------GSLL--NISSGVIRGALEMVSMKSEVTWVRDMLKGDEEFELQIKLLKQVPEEYP

O55013 Trafficking protein particle complex subunit 3

1.0e-09

40.22

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Query:  VFLGVTASVTNLDAYGTCCSIILDDNPLVVFV------GSLL--NISSGVIRGALEMVSMKSEVTWVRDMLKGDEEFELQIKLLKQVPEEYP
        ++LG+T S+TN    G   S+IL++NPLV FV       +L+  N+  GV+RGALEMV M  E  +V+D LKGD   E++++ ++++ +  P
Subjt:  VFLGVTASVTNLDAYGTCCSIILDDNPLVVFV------GSLL--NISSGVIRGALEMVSMKSEVTWVRDMLKGDEEFELQIKLLKQVPEEYP

P36149 Trafficking protein particle complex subunit BET3

6.7e-09

36.08

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Query:  VFLGVTASVTNLDAYGTCCSIILDDNPLVVFVGSLL---------NISSGVIRGALEMVSMKSEVTWVRDMLKGDEEFELQIKLLKQVPEEYPYKDD
        +FL +T ++TN        S+ILD+NPL  FV   +         NI  GV++G+LEMV +  +V +V D+L+GD + E+++KL + + +E P  +D
Subjt:  VFLGVTASVTNLDAYGTCCSIILDDNPLVVFVGSLL---------NISSGVIRGALEMVSMKSEVTWVRDMLKGDEEFELQIKLLKQVPEEYPYKDD

Q5U1Z2 Trafficking protein particle complex subunit 3

1.0e-09

40.22

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Query:  VFLGVTASVTNLDAYGTCCSIILDDNPLVVFV------GSLL--NISSGVIRGALEMVSMKSEVTWVRDMLKGDEEFELQIKLLKQVPEEYP
        ++LG+T S+TN    G   S+IL++NPLV FV       +L+  N+  GV+RGALEMV M  E  +V+D LKGD   E++++ ++++ +  P
Subjt:  VFLGVTASVTNLDAYGTCCSIILDDNPLVVFV------GSLL--NISSGVIRGALEMVSMKSEVTWVRDMLKGDEEFELQIKLLKQVPEEYP

Q5ZI57 Trafficking protein particle complex subunit 3

1.2e-10

42.39

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Query:  VFLGVTASVTNLDAYGTCCSIILDDNPLVVFV------GSLL--NISSGVIRGALEMVSMKSEVTWVRDMLKGDEEFELQIKLLKQVPEEYP
        ++LG+T S+TN    G   S+IL++NPLV FV       SL+  N+  GV+RGALEMV M  +V +V+D LKGD   E+++K ++++ +  P
Subjt:  VFLGVTASVTNLDAYGTCCSIILDDNPLVVFV------GSLL--NISSGVIRGALEMVSMKSEVTWVRDMLKGDEEFELQIKLLKQVPEEYP

Arabidopsis top hits

e value

%identity

Alignment

AT5G54750.1 Transport protein particle (TRAPP) component

1.6e-29

68.75

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Query:  VFLGVTASVTNLDAYGTCCSIILDDNPLVVFVG--------SLLNISSGVIRGALEMVSMKSEVTWVRDMLKGDEEFELQIKLLKQVPEEYPYKDD
        +FLGVTASVT+ D+ GTCCSIIL+DNPLV FV            N+ SGVIRGALEMVSMK+EVTW RD+L+GD+ +ELQ+KLLKQV EEYPYKDD
Subjt:  VFLGVTASVTNLDAYGTCCSIILDDNPLVVFVG--------SLLNISSGVIRGALEMVSMKSEVTWVRDMLKGDEEFELQIKLLKQVPEEYPYKDD

AT5G54750.2 Transport protein particle (TRAPP) component

1.6e-29

68.75

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Query:  VFLGVTASVTNLDAYGTCCSIILDDNPLVVFVG--------SLLNISSGVIRGALEMVSMKSEVTWVRDMLKGDEEFELQIKLLKQVPEEYPYKDD
        +FLGVTASVT+ D+ GTCCSIIL+DNPLV FV            N+ SGVIRGALEMVSMK+EVTW RD+L+GD+ +ELQ+KLLKQV EEYPYKDD
Subjt:  VFLGVTASVTNLDAYGTCCSIILDDNPLVVFVG--------SLLNISSGVIRGALEMVSMKSEVTWVRDMLKGDEEFELQIKLLKQVPEEYPYKDD

Sequences

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CDS sequence

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GTTTTCCTGGGGGTCACTGCATCGGTCACCAATTTGGATGCTTATGGAACGTGTTGCAGTATCATTTTGGACGACAATCCCTTAGTAGTCTTTGTTGGATCTTTGCTAAA
TATCTCGAGTGGAGTCATTAGAGGAGCCTTAGAGATGGTGTCAATGAAATCAGAAGTCACATGGGTGCGTGACATGCTTAAAGGAGATGAGGAATTTGAATTGCAAATAA
AACTACTCAAGCAAGTTCCCGAAGAGTACCCATACAAAGATGATAGT

mRNA sequence

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Protein sequence

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VFLGVTASVTNLDAYGTCCSIILDDNPLVVFVGSLLNISSGVIRGALEMVSMKSEVTWVRDMLKGDEEFELQIKLLKQVPEEYPYKDDS

MS000714 (gene) of Bitter gourd (TR) v1 genome