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MS000717 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS000717
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionCCHC-type domain-containing protein
Genome locationscaffold26:153747..153995
RNA-Seq ExpressionMS000717
SyntenyMS000717
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001878 - Zinc finger, CCHC-type
IPR025836 - Zinc knuckle CX2CX4HX4C


Homology Show/hide homology
GenBank top hitse value%identityAlignment
PON92154.1 Zinc knuckle CX2CX4HX4C [Trema orientale]6.6e-1645Show/hide
Query:  AVALGNLVGRFEKIETDEEGKCWGQILRVRILIDVSKPLRRGILIKVGSMSDEKWILITYKKLPDFCYRCGKLDHVVKNC
        A  LGN  GRF ++E D+ G C G+ L VR+++D++KPLRRG  +++GS     W+   Y +LPDFC+ CGK+ H + +C
Subjt:  AVALGNLVGRFEKIETDEEGKCWGQILRVRILIDVSKPLRRGILIKVGSMSDEKWILITYKKLPDFCYRCGKLDHVVKNC

TXG54013.1 hypothetical protein EZV62_019269 [Acer yangbiense]2.5e-1543.37Show/hide
Query:  RKSAVALGNLVGRFEKIETDEEGKCWGQILRVRILIDVSKPLRRGILIKVGSMSDEKWILITYKKLPDFCYRCGKLDHVVKNC
        R+  + LG LVG+ ++I+  E G+C GQ +R+R+LIDV  PL+RG+ + +G       ++I Y++LP+FCY CGK+ H+V++C
Subjt:  RKSAVALGNLVGRFEKIETDEEGKCWGQILRVRILIDVSKPLRRGILIKVGSMSDEKWILITYKKLPDFCYRCGKLDHVVKNC

XP_021318626.1 uncharacterized protein LOC110436290 [Sorghum bicolor]5.1e-1644.58Show/hide
Query:  RKSAVALGNLVGRFEKIETDEEGKCWGQILRVRILIDVSKPLRRGILIKVGSMSDEKWILITYKKLPDFCYRCGKLDHVVKNC
        R++   LG  +G F++++  E+G   G++LR+++LID+ KPL RGI +KVG    EKW    Y+ LPDFCY CG + H+ K+C
Subjt:  RKSAVALGNLVGRFEKIETDEEGKCWGQILRVRILIDVSKPLRRGILIKVGSMSDEKWILITYKKLPDFCYRCGKLDHVVKNC

XP_022132681.1 uncharacterized protein LOC111005481 [Momordica charantia]8.7e-1648.75Show/hide
Query:  AVALGNLVGRFEKIETDEEGKCWGQILRVRILIDVSKPLRRGILIKVGSMSDEKWILITYKKLPDFCYRCGKLDHVVKNC
        A  LGN +G FE +E++    CWG  LRVR+  DV KPL RGI + +       WI I Y++LPDF Y CG+LDH++K+C
Subjt:  AVALGNLVGRFEKIETDEEGKCWGQILRVRILIDVSKPLRRGILIKVGSMSDEKWILITYKKLPDFCYRCGKLDHVVKNC

XP_022156185.1 uncharacterized protein LOC111023135 [Momordica charantia]3.3e-1547.5Show/hide
Query:  AVALGNLVGRFEKIETDEEGKCWGQILRVRILIDVSKPLRRGILIKVGSMSDEKWILITYKKLPDFCYRCGKLDHVVKNC
        A+ LGN +G F  ++ +E+G  WG  LR+R+LID++KPLRRGI I +       WI I Y++LPDFCY CG + H   +C
Subjt:  AVALGNLVGRFEKIETDEEGKCWGQILRVRILIDVSKPLRRGILIKVGSMSDEKWILITYKKLPDFCYRCGKLDHVVKNC

TrEMBL top hitse value%identityAlignment
A0A2P5F2Z2 Zinc knuckle CX2CX4HX4C3.2e-1645Show/hide
Query:  AVALGNLVGRFEKIETDEEGKCWGQILRVRILIDVSKPLRRGILIKVGSMSDEKWILITYKKLPDFCYRCGKLDHVVKNC
        A  LGN  GRF ++E D+ G C G+ L VR+++D++KPLRRG  +++GS     W+   Y +LPDFC+ CGK+ H + +C
Subjt:  AVALGNLVGRFEKIETDEEGKCWGQILRVRILIDVSKPLRRGILIKVGSMSDEKWILITYKKLPDFCYRCGKLDHVVKNC

A0A5C7H9Y2 CCHC-type domain-containing protein1.2e-1543.37Show/hide
Query:  RKSAVALGNLVGRFEKIETDEEGKCWGQILRVRILIDVSKPLRRGILIKVGSMSDEKWILITYKKLPDFCYRCGKLDHVVKNC
        R+  + LG LVG+ ++I+  E G+C GQ +R+R+LIDV  PL+RG+ + +G       ++I Y++LP+FCY CGK+ H+V++C
Subjt:  RKSAVALGNLVGRFEKIETDEEGKCWGQILRVRILIDVSKPLRRGILIKVGSMSDEKWILITYKKLPDFCYRCGKLDHVVKNC

A0A6J1BSZ1 uncharacterized protein LOC1110054814.2e-1648.75Show/hide
Query:  AVALGNLVGRFEKIETDEEGKCWGQILRVRILIDVSKPLRRGILIKVGSMSDEKWILITYKKLPDFCYRCGKLDHVVKNC
        A  LGN +G FE +E++    CWG  LRVR+  DV KPL RGI + +       WI I Y++LPDF Y CG+LDH++K+C
Subjt:  AVALGNLVGRFEKIETDEEGKCWGQILRVRILIDVSKPLRRGILIKVGSMSDEKWILITYKKLPDFCYRCGKLDHVVKNC

A0A6J1DU55 uncharacterized protein LOC1110231351.6e-1547.5Show/hide
Query:  AVALGNLVGRFEKIETDEEGKCWGQILRVRILIDVSKPLRRGILIKVGSMSDEKWILITYKKLPDFCYRCGKLDHVVKNC
        A+ LGN +G F  ++ +E+G  WG  LR+R+LID++KPLRRGI I +       WI I Y++LPDFCY CG + H   +C
Subjt:  AVALGNLVGRFEKIETDEEGKCWGQILRVRILIDVSKPLRRGILIKVGSMSDEKWILITYKKLPDFCYRCGKLDHVVKNC

A0A803QQH9 Uncharacterized protein2.1e-1543.75Show/hide
Query:  AVALGNLVGRFEKIETDEEGKCWGQILRVRILIDVSKPLRRGILIKVGSMSDEKWILITYKKLPDFCYRCGKLDHVVKNC
        AVALGN++G+FE +  D   + WG  LR+R+L+DV+KPL+RG +I +G + D+ W+   Y++LP++C  CG + H    C
Subjt:  AVALGNLVGRFEKIETDEEGKCWGQILRVRILIDVSKPLRRGILIKVGSMSDEKWILITYKKLPDFCYRCGKLDHVVKNC

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
AGGAAATCGGCAGTAGCGCTTGGCAATCTAGTTGGGCGATTTGAGAAAATTGAAACAGATGAAGAAGGCAAATGTTGGGGACAGATATTGAGAGTTAGAATCTTGATTGA
CGTGAGCAAACCTCTGCGCCGAGGTATTCTGATTAAAGTTGGTTCTATGTCGGATGAAAAGTGGATACTGATTACCTACAAAAAGCTCCCGGACTTTTGCTACAGATGTG
GAAAATTGGATCATGTGGTAAAGAACTGT
mRNA sequenceShow/hide mRNA sequence
AGGAAATCGGCAGTAGCGCTTGGCAATCTAGTTGGGCGATTTGAGAAAATTGAAACAGATGAAGAAGGCAAATGTTGGGGACAGATATTGAGAGTTAGAATCTTGATTGA
CGTGAGCAAACCTCTGCGCCGAGGTATTCTGATTAAAGTTGGTTCTATGTCGGATGAAAAGTGGATACTGATTACCTACAAAAAGCTCCCGGACTTTTGCTACAGATGTG
GAAAATTGGATCATGTGGTAAAGAACTGT
Protein sequenceShow/hide protein sequence
RKSAVALGNLVGRFEKIETDEEGKCWGQILRVRILIDVSKPLRRGILIKVGSMSDEKWILITYKKLPDFCYRCGKLDHVVKNC