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MS000719 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS000719
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionTransposon protein, putative, CACTA, En/Spm sub-class
Genome locationscaffold26:196990..197510
RNA-Seq ExpressionMS000719
SyntenyMS000719
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022143616.1 uncharacterized protein LOC111013476 [Momordica charantia]1.0e-1168.97Show/hide
Query:  LLNHFNIDIFQHHVYQYIVYEIGTRFKDYRARLHQYYMKFRDPARARQKPYRDIKPED
        LL  F +DI Q HV++YI+YEIGTRFKDYRA+L+++Y K RD ARARQKPY+DIK ED
Subjt:  LLNHFNIDIFQHHVYQYIVYEIGTRFKDYRARLHQYYMKFRDPARARQKPYRDIKPED

XP_022159083.1 uncharacterized protein LOC111025525 [Momordica charantia]3.7e-4668.97Show/hide
Query:  MSSDSEGDEIIAGLTRGRAETRGEFLTRVVERAGKIKLEWTKEQGRLVAIGSASFNSEIGYLTRNMIDVKYAKKKDILRNDFHMIIETLLNHFNIDIFQH
        MSSDSEG++ IAG+TR + ETRGEFL RVV R GKIKLEWT++QGR V  GSASFNSEIGYL RN ID K AKKK+I   + + II+ LL  F +DI Q 
Subjt:  MSSDSEGDEIIAGLTRGRAETRGEFLTRVVERAGKIKLEWTKEQGRLVAIGSASFNSEIGYLTRNMIDVKYAKKKDILRNDFHMIIETLLNHFNIDIFQH

Query:  HVYQYIVYEIGTRFKDYRARLHQYYMKFRDPARARQKPYRDIKPE
        HV++YI+YEIGTRFKDYRA+LH++Y K RDPARARQKPY+DIK E
Subjt:  HVYQYIVYEIGTRFKDYRARLHQYYMKFRDPARARQKPYRDIKPE

XP_038895319.1 uncharacterized protein LOC120083572 isoform X1 [Benincasa hispida]5.4e-2143.51Show/hide
Query:  RGRAETRGEFLTRVVERAGKIKLEWTKEQGRLVAIGSASFNSEIGYLTRNMIDVKYAKKKDILRNDFHMIIETLLNHFNIDIFQHHVYQYIVYEIGTRFK
        R R  +RG  L +     G+IK+ WT  QG+ +   ++ FN EIG L R  I +KY K+KDI    + ++ E LLN F++DI Q H+ +YI YEIG RFK
Subjt:  RGRAETRGEFLTRVVERAGKIKLEWTKEQGRLVAIGSASFNSEIGYLTRNMIDVKYAKKKDILRNDFHMIIETLLNHFNIDIFQHHVYQYIVYEIGTRFK

Query:  DYRARLHQYYMKFRDPARARQKPYRDIKPED
        DYR  L+++Y K+ DP  AR+ PY+    +D
Subjt:  DYRARLHQYYMKFRDPARARQKPYRDIKPED

XP_038895320.1 uncharacterized protein LOC120083572 isoform X2 [Benincasa hispida]5.4e-2143.51Show/hide
Query:  RGRAETRGEFLTRVVERAGKIKLEWTKEQGRLVAIGSASFNSEIGYLTRNMIDVKYAKKKDILRNDFHMIIETLLNHFNIDIFQHHVYQYIVYEIGTRFK
        R R  +RG  L +     G+IK+ WT  QG+ +   ++ FN EIG L R  I +KY K+KDI    + ++ E LLN F++DI Q H+ +YI YEIG RFK
Subjt:  RGRAETRGEFLTRVVERAGKIKLEWTKEQGRLVAIGSASFNSEIGYLTRNMIDVKYAKKKDILRNDFHMIIETLLNHFNIDIFQHHVYQYIVYEIGTRFK

Query:  DYRARLHQYYMKFRDPARARQKPYRDIKPED
        DYR  L+++Y K+ DP  AR+ PY+    +D
Subjt:  DYRARLHQYYMKFRDPARARQKPYRDIKPED

XP_038895321.1 uncharacterized protein LOC120083572 isoform X3 [Benincasa hispida]5.4e-2143.51Show/hide
Query:  RGRAETRGEFLTRVVERAGKIKLEWTKEQGRLVAIGSASFNSEIGYLTRNMIDVKYAKKKDILRNDFHMIIETLLNHFNIDIFQHHVYQYIVYEIGTRFK
        R R  +RG  L +     G+IK+ WT  QG+ +   ++ FN EIG L R  I +KY K+KDI    + ++ E LLN F++DI Q H+ +YI YEIG RFK
Subjt:  RGRAETRGEFLTRVVERAGKIKLEWTKEQGRLVAIGSASFNSEIGYLTRNMIDVKYAKKKDILRNDFHMIIETLLNHFNIDIFQHHVYQYIVYEIGTRFK

Query:  DYRARLHQYYMKFRDPARARQKPYRDIKPED
        DYR  L+++Y K+ DP  AR+ PY+    +D
Subjt:  DYRARLHQYYMKFRDPARARQKPYRDIKPED

TrEMBL top hitse value%identityAlignment
A0A438CDA5 Uncharacterized protein5.5e-1133.58Show/hide
Query:  LTRGRAETRGEFLTRVVERAGKIKLEWTKEQGR-LVAIGSASFNSEIGYLTRNMIDVKYAKKKDILRNDFHMIIETLLNHFNIDIFQHHVYQYIVYEIGT
        L +GR  TRG+    +V+ +GKIKL++  E GR   +  SA F++E GYL R    +++ K   I   D   +++ LL+ F++D+ + ++ +Y+   +G 
Subjt:  LTRGRAETRGEFLTRVVERAGKIKLEWTKEQGR-LVAIGSASFNSEIGYLTRNMIDVKYAKKKDILRNDFHMIIETLLNHFNIDIFQHHVYQYIVYEIGT

Query:  RFKDYRARLHQYYMKFRDPARARQKPYRDIKPED
        R++ YR  LHQ++ +F     AR  P  D+  ED
Subjt:  RFKDYRARLHQYYMKFRDPARARQKPYRDIKPED

A0A6J1CQT5 uncharacterized protein LOC1110134764.9e-1268.97Show/hide
Query:  LLNHFNIDIFQHHVYQYIVYEIGTRFKDYRARLHQYYMKFRDPARARQKPYRDIKPED
        LL  F +DI Q HV++YI+YEIGTRFKDYRA+L+++Y K RD ARARQKPY+DIK ED
Subjt:  LLNHFNIDIFQHHVYQYIVYEIGTRFKDYRARLHQYYMKFRDPARARQKPYRDIKPED

A0A6J1DLF1 uncharacterized protein LOC1110211383.2e-1167.24Show/hide
Query:  LLNHFNIDIFQHHVYQYIVYEIGTRFKDYRARLHQYYMKFRDPARARQKPYRDIKPED
        LL  F + I Q HV++YI+YEIGTRFKDYRA+LH++Y K RD A ARQKPY+DIK ED
Subjt:  LLNHFNIDIFQHHVYQYIVYEIGTRFKDYRARLHQYYMKFRDPARARQKPYRDIKPED

A0A6J1DXU5 uncharacterized protein LOC1110255251.8e-4668.97Show/hide
Query:  MSSDSEGDEIIAGLTRGRAETRGEFLTRVVERAGKIKLEWTKEQGRLVAIGSASFNSEIGYLTRNMIDVKYAKKKDILRNDFHMIIETLLNHFNIDIFQH
        MSSDSEG++ IAG+TR + ETRGEFL RVV R GKIKLEWT++QGR V  GSASFNSEIGYL RN ID K AKKK+I   + + II+ LL  F +DI Q 
Subjt:  MSSDSEGDEIIAGLTRGRAETRGEFLTRVVERAGKIKLEWTKEQGRLVAIGSASFNSEIGYLTRNMIDVKYAKKKDILRNDFHMIIETLLNHFNIDIFQH

Query:  HVYQYIVYEIGTRFKDYRARLHQYYMKFRDPARARQKPYRDIKPE
        HV++YI+YEIGTRFKDYRA+LH++Y K RDPARARQKPY+DIK E
Subjt:  HVYQYIVYEIGTRFKDYRARLHQYYMKFRDPARARQKPYRDIKPE

A5B8Q2 Uncharacterized protein1.4e-1133.1Show/hide
Query:  SDSEGDEIIAGLTRGRAETRGEFLTRVVERAGKIKLEWTKEQGR-LVAIGSASFNSEIGYLTRNMIDVKYAKKKDILRNDFHMIIETLLNHFNIDIFQHH
        SDS+ D     L +GR  TRG+    +V+ +GKIKL++  E GR   +  SA F++E GYL R    +++ K   I   D   +++ LL+ F++D+ + +
Subjt:  SDSEGDEIIAGLTRGRAETRGEFLTRVVERAGKIKLEWTKEQGR-LVAIGSASFNSEIGYLTRNMIDVKYAKKKDILRNDFHMIIETLLNHFNIDIFQHH

Query:  VYQYIVYEIGTRFKDYRARLHQYYMKFRDPARARQKPYRDIKPED
        + +Y+   +G R++ YR  LHQ++ +F     A   P  D+  ED
Subjt:  VYQYIVYEIGTRFKDYRARLHQYYMKFRDPARARQKPYRDIKPED

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCATCGGACAGTGAAGGTGATGAAATCATTGCCGGACTCACGCGAGGTCGTGCTGAAACTCGTGGTGAGTTCTTAACAAGAGTTGTCGAGCGTGCTGGAAAAATCAA
ACTCGAATGGACAAAGGAACAAGGGAGACTTGTTGCAATTGGATCAGCTTCATTCAATAGTGAAATTGGTTACCTGACCCGCAACATGATCGATGTAAAATACGCAAAAA
AGAAAGACATACTGAGGAATGATTTTCACATGATCATTGAAACATTATTGAATCATTTTAATATTGATATATTTCAGCACCATGTTTATCAATATATCGTGTATGAGATT
GGAACTCGATTTAAAGATTATCGAGCGAGGTTACATCAATACTATATGAAATTTAGGGATCCAGCACGTGCTCGCCAGAAACCCTATCGAGACATTAAACCCGAGGAC
mRNA sequenceShow/hide mRNA sequence
ATGTCATCGGACAGTGAAGGTGATGAAATCATTGCCGGACTCACGCGAGGTCGTGCTGAAACTCGTGGTGAGTTCTTAACAAGAGTTGTCGAGCGTGCTGGAAAAATCAA
ACTCGAATGGACAAAGGAACAAGGGAGACTTGTTGCAATTGGATCAGCTTCATTCAATAGTGAAATTGGTTACCTGACCCGCAACATGATCGATGTAAAATACGCAAAAA
AGAAAGACATACTGAGGAATGATTTTCACATGATCATTGAAACATTATTGAATCATTTTAATATTGATATATTTCAGCACCATGTTTATCAATATATCGTGTATGAGATT
GGAACTCGATTTAAAGATTATCGAGCGAGGTTACATCAATACTATATGAAATTTAGGGATCCAGCACGTGCTCGCCAGAAACCCTATCGAGACATTAAACCCGAGGAC
Protein sequenceShow/hide protein sequence
MSSDSEGDEIIAGLTRGRAETRGEFLTRVVERAGKIKLEWTKEQGRLVAIGSASFNSEIGYLTRNMIDVKYAKKKDILRNDFHMIIETLLNHFNIDIFQHHVYQYIVYEI
GTRFKDYRARLHQYYMKFRDPARARQKPYRDIKPED