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MS000724 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS000724
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionWD repeat-containing protein 25
Genome locationscaffold26:301689..301982
RNA-Seq ExpressionMS000724
SyntenyMS000724
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6600751.1 WD repeat-containing protein 25, partial [Cucurbita argyrosperma subsp. sororia]2.2e-2673.74Show/hide
Query:  MESLFEAYSNASEDD--EDEPQPKRLALPSSPSKRPKPERSKFPPKFQPSPSPDFNSEPQKGIMVPGRYVSKRERALLGAAPVSTAPDSFLNPSVLSST
        ME LFEAYSN S++D  EDEPQPKRLALPSS SKR  PE S+F P F+PS  PD  SEPQK IMVPGRY+SKRERAL+ +APVS AP+SFLNPSV SST
Subjt:  MESLFEAYSNASEDD--EDEPQPKRLALPSSPSKRPKPERSKFPPKFQPSPSPDFNSEPQKGIMVPGRYVSKRERALLGAAPVSTAPDSFLNPSVLSST
KAG7031391.1 WD repeat-containing protein 25, partial [Cucurbita argyrosperma subsp. argyrosperma]2.2e-2673.74Show/hide
Query:  MESLFEAYSNASEDD--EDEPQPKRLALPSSPSKRPKPERSKFPPKFQPSPSPDFNSEPQKGIMVPGRYVSKRERALLGAAPVSTAPDSFLNPSVLSST
        ME LFEAYSN S++D  EDEPQPKRLALPSS SKR  PE S+F P F+PS  PD  SEPQK IMVPGRY+SKRERAL+ +APVS AP+SFLNPSV SST
Subjt:  MESLFEAYSNASEDD--EDEPQPKRLALPSSPSKRPKPERSKFPPKFQPSPSPDFNSEPQKGIMVPGRYVSKRERALLGAAPVSTAPDSFLNPSVLSST
XP_022142879.1 WD repeat-containing protein 25 [Momordica charantia]8.9e-44100Show/hide
Query:  MESLFEAYSNASEDDEDEPQPKRLALPSSPSKRPKPERSKFPPKFQPSPSPDFNSEPQKGIMVPGRYVSKRERALLGAAPVSTAPDSFLNPSVLSST
        MESLFEAYSNASEDDEDEPQPKRLALPSSPSKRPKPERSKFPPKFQPSPSPDFNSEPQKGIMVPGRYVSKRERALLGAAPVSTAPDSFLNPSVLSST
Subjt:  MESLFEAYSNASEDDEDEPQPKRLALPSSPSKRPKPERSKFPPKFQPSPSPDFNSEPQKGIMVPGRYVSKRERALLGAAPVSTAPDSFLNPSVLSST
XP_022941667.1 WD repeat-containing protein 25 [Cucurbita moschata]5.8e-2774.75Show/hide
Query:  MESLFEAYSNASEDD--EDEPQPKRLALPSSPSKRPKPERSKFPPKFQPSPSPDFNSEPQKGIMVPGRYVSKRERALLGAAPVSTAPDSFLNPSVLSST
        ME LFEAYSN S++D  EDEPQPKRLALPSS SKR  PE S+F P F+PS SPD  SEPQK IMVPGRY+SKRERAL+ +APVS AP+SFLNPSV SST
Subjt:  MESLFEAYSNASEDD--EDEPQPKRLALPSSPSKRPKPERSKFPPKFQPSPSPDFNSEPQKGIMVPGRYVSKRERALLGAAPVSTAPDSFLNPSVLSST
XP_022992622.1 WD repeat-containing protein 25 [Cucurbita maxima]1.1e-2572.73Show/hide
Query:  MESLFEAYSNASEDD--EDEPQPKRLALPSSPSKRPKPERSKFPPKFQPSPSPDFNSEPQKGIMVPGRYVSKRERALLGAAPVSTAPDSFLNPSVLSST
        ME LFEAYSN S++D  EDEPQPKRLALPSS SKR  PE S+F P F+PS  PD  SEPQK IMVPGRY+SKRERAL+ +APVS AP+SFLNPSV  ST
Subjt:  MESLFEAYSNASEDD--EDEPQPKRLALPSSPSKRPKPERSKFPPKFQPSPSPDFNSEPQKGIMVPGRYVSKRERALLGAAPVSTAPDSFLNPSVLSST
TrEMBL top hitse value%identityAlignment
A0A5A7U0J5 WD repeat-containing protein 25 isoform X25.1e-2163.92Show/hide
Query:  MESLFEAYSNASE--DDEDEPQPKRLALPSSPSKRPKPERSKFPPKFQPSPSPDFNSEPQKGIMVPGRYVSKRERALLGAAPVSTAPDSFLNPSVLS
        MESLF+AYSN+S+  D+EDEP+PKRLAL SSPSKRP+ E  KF P  +PS     N +P + IMVPGRY+SKRERALL +AP S AP+SF NPS+ S
Subjt:  MESLFEAYSNASE--DDEDEPQPKRLALPSSPSKRPKPERSKFPPKFQPSPSPDFNSEPQKGIMVPGRYVSKRERALLGAAPVSTAPDSFLNPSVLS
A0A5D3C0T2 WD repeat-containing protein 25 isoform X25.1e-2163.92Show/hide
Query:  MESLFEAYSNASE--DDEDEPQPKRLALPSSPSKRPKPERSKFPPKFQPSPSPDFNSEPQKGIMVPGRYVSKRERALLGAAPVSTAPDSFLNPSVLS
        MESLF+AYSN+S+  D+EDEP+PKRLAL SSPSKRP+ E  KF P  +PS     N +P + IMVPGRY+SKRERALL +AP S AP+SF NPS+ S
Subjt:  MESLFEAYSNASE--DDEDEPQPKRLALPSSPSKRPKPERSKFPPKFQPSPSPDFNSEPQKGIMVPGRYVSKRERALLGAAPVSTAPDSFLNPSVLS
A0A6J1CMQ5 WD repeat-containing protein 254.3e-44100Show/hide
Query:  MESLFEAYSNASEDDEDEPQPKRLALPSSPSKRPKPERSKFPPKFQPSPSPDFNSEPQKGIMVPGRYVSKRERALLGAAPVSTAPDSFLNPSVLSST
        MESLFEAYSNASEDDEDEPQPKRLALPSSPSKRPKPERSKFPPKFQPSPSPDFNSEPQKGIMVPGRYVSKRERALLGAAPVSTAPDSFLNPSVLSST
Subjt:  MESLFEAYSNASEDDEDEPQPKRLALPSSPSKRPKPERSKFPPKFQPSPSPDFNSEPQKGIMVPGRYVSKRERALLGAAPVSTAPDSFLNPSVLSST
A0A6J1FN47 WD repeat-containing protein 252.8e-2774.75Show/hide
Query:  MESLFEAYSNASEDD--EDEPQPKRLALPSSPSKRPKPERSKFPPKFQPSPSPDFNSEPQKGIMVPGRYVSKRERALLGAAPVSTAPDSFLNPSVLSST
        ME LFEAYSN S++D  EDEPQPKRLALPSS SKR  PE S+F P F+PS SPD  SEPQK IMVPGRY+SKRERAL+ +APVS AP+SFLNPSV SST
Subjt:  MESLFEAYSNASEDD--EDEPQPKRLALPSSPSKRPKPERSKFPPKFQPSPSPDFNSEPQKGIMVPGRYVSKRERALLGAAPVSTAPDSFLNPSVLSST
A0A6J1JQD9 WD repeat-containing protein 255.3e-2672.73Show/hide
Query:  MESLFEAYSNASEDD--EDEPQPKRLALPSSPSKRPKPERSKFPPKFQPSPSPDFNSEPQKGIMVPGRYVSKRERALLGAAPVSTAPDSFLNPSVLSST
        ME LFEAYSN S++D  EDEPQPKRLALPSS SKR  PE S+F P F+PS  PD  SEPQK IMVPGRY+SKRERAL+ +APVS AP+SFLNPSV  ST
Subjt:  MESLFEAYSNASEDD--EDEPQPKRLALPSSPSKRPKPERSKFPPKFQPSPSPDFNSEPQKGIMVPGRYVSKRERALLGAAPVSTAPDSFLNPSVLSST
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT5G54520.1 Transducin/WD40 repeat-like superfamily protein4.6e-0635.48Show/hide
Query:  MESLFEAYSNASEDDEDEPQP--------KRLALPSSPSKR--PKPERSKFPPKFQPSPSPDFNSEPQKG----------IMVPGRYVSKRERALLGAAP
        M+ +  +Y+N   D +DEP+P        K  A PS PSKR  P PE  ++ P  +P P     SE Q            + VPGRYVSKRER+LL +  
Subjt:  MESLFEAYSNASEDDEDEPQP--------KRLALPSSPSKR--PKPERSKFPPKFQPSPSPDFNSEPQKG----------IMVPGRYVSKRERALLGAAP

Query:  VSTAPDS--------FLNPSVLSS
            PD         + +P+VL S
Subjt:  VSTAPDS--------FLNPSVLSS

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAATCTCTGTTCGAAGCTTACTCAAATGCTTCTGAAGACGACGAAGATGAACCTCAGCCCAAGCGCCTGGCTCTCCCCTCTTCGCCTTCAAAGAGGCCCAAACCCGA
ACGTTCCAAATTCCCGCCGAAGTTCCAGCCATCGCCTTCCCCGGACTTCAATTCAGAGCCTCAGAAGGGGATTATGGTTCCTGGACGCTACGTTTCCAAGCGAGAGCGAG
CACTCTTGGGTGCAGCTCCTGTTTCTACGGCTCCGGACTCGTTCCTGAATCCATCGGTTCTATCTTCAACTGGT
mRNA sequenceShow/hide mRNA sequence
ATGGAATCTCTGTTCGAAGCTTACTCAAATGCTTCTGAAGACGACGAAGATGAACCTCAGCCCAAGCGCCTGGCTCTCCCCTCTTCGCCTTCAAAGAGGCCCAAACCCGA
ACGTTCCAAATTCCCGCCGAAGTTCCAGCCATCGCCTTCCCCGGACTTCAATTCAGAGCCTCAGAAGGGGATTATGGTTCCTGGACGCTACGTTTCCAAGCGAGAGCGAG
CACTCTTGGGTGCAGCTCCTGTTTCTACGGCTCCGGACTCGTTCCTGAATCCATCGGTTCTATCTTCAACTGGT
Protein sequenceShow/hide protein sequence
MESLFEAYSNASEDDEDEPQPKRLALPSSPSKRPKPERSKFPPKFQPSPSPDFNSEPQKGIMVPGRYVSKRERALLGAAPVSTAPDSFLNPSVLSSTG