; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS000734 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS000734
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionHTH myb-type domain-containing protein
Genome locationscaffold1574:1843..3295
RNA-Seq ExpressionMS000734
SyntenyMS000734
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0005634 - nucleus (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
InterPro domainsIPR006447 - Myb domain, plants
IPR009057 - Homeobox-like domain superfamily
IPR017930 - Myb domain
IPR044848 - PHR1-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6607985.1 putative Myb family transcription factor, partial [Cucurbita argyrosperma subsp. sororia]3.4e-4483.64Show/hide
Query:  MKSFSSERIGVRQYNKSELPRLRWTPELHRYFVQTVEILGGRNQATPKRILQMMGVKGLKISHIKSHLQMYRSMELERGSSCKHVVTRQAMKQPRKRTSH
        MKS SSERIGVRQYNKSELPRLRWTP LHRYFVQTVE+LGGRNQATPKRILQMMGVKGLKISHIKSHLQMYRSM+ E GSSC+HV+ +QAM+Q R+RT H
Subjt:  MKSFSSERIGVRQYNKSELPRLRWTPELHRYFVQTVEILGGRNQATPKRILQMMGVKGLKISHIKSHLQMYRSMELERGSSCKHVVTRQAMKQPRKRTSH

Query:  SSDIRVLLSS
        SSDI++ +SS
Subjt:  SSDIRVLLSS

XP_022141381.1 probable transcription factor KAN3 [Momordica charantia]3.8e-5197.27Show/hide
Query:  MKSFSSERIGVRQYNKSELPRLRWTPELHRYFVQTVEILGGRNQATPKRILQMMGVKGLKISHIKSHLQMYRSMELERGSSCKHVVTRQAMKQPRKRTSH
        MKSFSSERIGVRQYNKSELPRLRWTPELHRYFVQTVEILGGRNQATPKRILQ+MGVKGLKISHIKSHLQMYRS ELERGSSCKHVVTRQAMKQPRK TSH
Subjt:  MKSFSSERIGVRQYNKSELPRLRWTPELHRYFVQTVEILGGRNQATPKRILQMMGVKGLKISHIKSHLQMYRSMELERGSSCKHVVTRQAMKQPRKRTSH

Query:  SSDIRVLLSS
        SSDIRVLLSS
Subjt:  SSDIRVLLSS

XP_022982449.1 probable transcription factor KAN3 [Cucurbita maxima]6.9e-4584.55Show/hide
Query:  MKSFSSERIGVRQYNKSELPRLRWTPELHRYFVQTVEILGGRNQATPKRILQMMGVKGLKISHIKSHLQMYRSMELERGSSCKHVVTRQAMKQPRKRTSH
        MKS SSERIGVRQYNKSELPRLRWTP LHRYFVQTVE+LGGRNQATPKRILQMMGVKGLKISHIKSHLQMYRSM+LE GSSC+HV+ +QAM+Q R+RT H
Subjt:  MKSFSSERIGVRQYNKSELPRLRWTPELHRYFVQTVEILGGRNQATPKRILQMMGVKGLKISHIKSHLQMYRSMELERGSSCKHVVTRQAMKQPRKRTSH

Query:  SSDIRVLLSS
        SSDI++ +SS
Subjt:  SSDIRVLLSS

XP_023525384.1 probable transcription factor KAN3 isoform X1 [Cucurbita pepo subsp. pepo]3.4e-4483.64Show/hide
Query:  MKSFSSERIGVRQYNKSELPRLRWTPELHRYFVQTVEILGGRNQATPKRILQMMGVKGLKISHIKSHLQMYRSMELERGSSCKHVVTRQAMKQPRKRTSH
        MKS SSERIGVRQYNKSELPRLRWTP LHRYFVQTVE+LGGRNQATPKRILQMMGVKGLKISHIKSHLQMYRSM+ E GSSC+HV+ +QAM+Q R+RT H
Subjt:  MKSFSSERIGVRQYNKSELPRLRWTPELHRYFVQTVEILGGRNQATPKRILQMMGVKGLKISHIKSHLQMYRSMELERGSSCKHVVTRQAMKQPRKRTSH

Query:  SSDIRVLLSS
        SSDI++ +SS
Subjt:  SSDIRVLLSS

XP_038899444.1 myb family transcription factor MPH1-like [Benincasa hispida]4.9e-4384.55Show/hide
Query:  MKSFSSERIGVRQYNKSELPRLRWTPELHRYFVQTVEILGGRNQATPKRILQMMGVKGLKISHIKSHLQMYRSMELERGSSCKHVVTRQAMKQPRKRTSH
        MKS SSERIGVRQYNKSELPRLRWTPELHRYFV+TVEILGGRNQATPKRILQMMGVKGLKISHIKSHLQMYRS++LE GS C+ VV  Q MKQ R+RT H
Subjt:  MKSFSSERIGVRQYNKSELPRLRWTPELHRYFVQTVEILGGRNQATPKRILQMMGVKGLKISHIKSHLQMYRSMELERGSSCKHVVTRQAMKQPRKRTSH

Query:  SSDIRVLLSS
        SSDI+  LSS
Subjt:  SSDIRVLLSS

TrEMBL top hitse value%identityAlignment
A0A6J1CJ05 probable transcription factor KAN31.8e-5197.27Show/hide
Query:  MKSFSSERIGVRQYNKSELPRLRWTPELHRYFVQTVEILGGRNQATPKRILQMMGVKGLKISHIKSHLQMYRSMELERGSSCKHVVTRQAMKQPRKRTSH
        MKSFSSERIGVRQYNKSELPRLRWTPELHRYFVQTVEILGGRNQATPKRILQ+MGVKGLKISHIKSHLQMYRS ELERGSSCKHVVTRQAMKQPRK TSH
Subjt:  MKSFSSERIGVRQYNKSELPRLRWTPELHRYFVQTVEILGGRNQATPKRILQMMGVKGLKISHIKSHLQMYRSMELERGSSCKHVVTRQAMKQPRKRTSH

Query:  SSDIRVLLSS
        SSDIRVLLSS
Subjt:  SSDIRVLLSS

A0A6J1FFE3 putative Myb family transcription factor At1g146001.0e-4183.93Show/hide
Query:  MKSFSSERIGVRQYNKSELPRLRWTPELHRYFVQTVEILGGRNQATPKRILQMMGVKGLKISHIKSHLQMYRSMELERGSSCK--HVVTRQAMKQPRKRT
        MKS SSERIGVRQYNKSELPRLRWTPELHRYFVQTVEILGGRNQATPKRILQMMGVKGLKISHIKSHLQMYRSM+LE+GSS +   VV +QA KQ R  T
Subjt:  MKSFSSERIGVRQYNKSELPRLRWTPELHRYFVQTVEILGGRNQATPKRILQMMGVKGLKISHIKSHLQMYRSMELERGSSCK--HVVTRQAMKQPRKRT

Query:  SHSSDIRVLLSS
         HSSDI++ LSS
Subjt:  SHSSDIRVLLSS

A0A6J1FNB8 probable transcription factor KAN45.3e-4383.64Show/hide
Query:  MKSFSSERIGVRQYNKSELPRLRWTPELHRYFVQTVEILGGRNQATPKRILQMMGVKGLKISHIKSHLQMYRSMELERGSSCKHVVTRQAMKQPRKRTSH
        MKS SSERIGVRQYNKSELPRLRWTP LHRYFVQTVE+LGGRNQATPKRILQMMGVKGLKISHIKSHLQMYRSM+ E GSSC+HV+ +QAM+Q R RT H
Subjt:  MKSFSSERIGVRQYNKSELPRLRWTPELHRYFVQTVEILGGRNQATPKRILQMMGVKGLKISHIKSHLQMYRSMELERGSSCKHVVTRQAMKQPRKRTSH

Query:  SSDIRVLLSS
        SSDI++ +SS
Subjt:  SSDIRVLLSS

A0A6J1IGV1 putative Myb family transcription factor At1g146005.9e-4283.93Show/hide
Query:  MKSFSSERIGVRQYNKSELPRLRWTPELHRYFVQTVEILGGRNQATPKRILQMMGVKGLKISHIKSHLQMYRSMELERGSSCK--HVVTRQAMKQPRKRT
        MKS SSERIGVR+YNKSELPRLRWTPELHRYFVQTVEILGGRNQATPKRILQMMGVKGLKISHIKSHLQMYRSM+LE+GSS +   VV +QA KQ R RT
Subjt:  MKSFSSERIGVRQYNKSELPRLRWTPELHRYFVQTVEILGGRNQATPKRILQMMGVKGLKISHIKSHLQMYRSMELERGSSCK--HVVTRQAMKQPRKRT

Query:  SHSSDIRVLLSS
         HSSDI++ LSS
Subjt:  SHSSDIRVLLSS

A0A6J1J4K7 probable transcription factor KAN33.3e-4584.55Show/hide
Query:  MKSFSSERIGVRQYNKSELPRLRWTPELHRYFVQTVEILGGRNQATPKRILQMMGVKGLKISHIKSHLQMYRSMELERGSSCKHVVTRQAMKQPRKRTSH
        MKS SSERIGVRQYNKSELPRLRWTP LHRYFVQTVE+LGGRNQATPKRILQMMGVKGLKISHIKSHLQMYRSM+LE GSSC+HV+ +QAM+Q R+RT H
Subjt:  MKSFSSERIGVRQYNKSELPRLRWTPELHRYFVQTVEILGGRNQATPKRILQMMGVKGLKISHIKSHLQMYRSMELERGSSCKHVVTRQAMKQPRKRTSH

Query:  SSDIRVLLSS
        SSDI++ +SS
Subjt:  SSDIRVLLSS

SwissProt top hitse value%identityAlignment
A0A0P0X0C0 Myb family transcription factor MPH13.1e-2464.71Show/hide
Query:  ERIGVRQYNKSELPRLRWTPELHRYFVQTVEILGGRNQATPKRILQMMGVKGLKISHIKSHLQMYRSMELERGSSCKHVVTRQAM
        ER GVRQYN+SE+PR+RWT E+HR FV+ VE LGG+++ATPKRILQ+MGVKG+ ISHIKSHLQMYRS      S+  H V+ Q +
Subjt:  ERIGVRQYNKSELPRLRWTPELHRYFVQTVEILGGRNQATPKRILQMMGVKGLKISHIKSHLQMYRSMELERGSSCKHVVTRQAM

A3AWH5 Myb family transcription factor MOF19.4e-2159.34Show/hide
Query:  VRQYNKSELPRLRWTPELHRYFVQTVEILGGRNQATPKRILQMMGVKGLKISHIKSHLQMYRSMELERGSSCKHVVTRQAMKQPRKRTSHS
        VRQY +S++PRLRWT ELH  FVQ +E LGG+++ATPK ILQ+MGVKGL ISH+KSHLQMYR   L  GS   H   R++  QP+ +  HS
Subjt:  VRQYNKSELPRLRWTPELHRYFVQTVEILGGRNQATPKRILQMMGVKGLKISHIKSHLQMYRSMELERGSSCKHVVTRQAMKQPRKRTSHS

Q700D9 Putative Myb family transcription factor At1g146005.2e-1964.18Show/hide
Query:  GVRQYNKSELPRLRWTPELHRYFVQTVEILGGRNQATPKRILQMMGVKGLKISHIKSHLQMYRSMEL
        GVR Y +S +PRLRWTPELHR FV  V++LGG+ +ATPK +L++M VKGL ISH+KSHLQMYR   +
Subjt:  GVRQYNKSELPRLRWTPELHRYFVQTVEILGGRNQATPKRILQMMGVKGLKISHIKSHLQMYRSMEL

Q93WJ9 Transcription repressor KAN12.5e-1357.14Show/hide
Query:  PRLRWTPELHRYFVQTVEILGGRNQATPKRILQMMGVKGLKISHIKSHLQMYRSME
        PR+RWT  LH  FV  VE+LGG  +ATPK +L++M VK L ++H+KSHLQMYR+++
Subjt:  PRLRWTPELHRYFVQTVEILGGRNQATPKRILQMMGVKGLKISHIKSHLQMYRSME

Q9FJV5 Probable transcription factor KAN41.0e-1443.33Show/hide
Query:  KSFSSERIGVRQYNKSELPRLRWTPELHRYFVQTVEILGGRNQATPKRILQMMGVKGLKISHIKSHLQMYRSME-LERGSSCKHVVTRQA
        K  SS  +G+++  ++  PR+RWT  LH +FV  V++LGG  +ATPK +L++M VK L ++H+KSHLQMYR+++  ++GS  +  V ++A
Subjt:  KSFSSERIGVRQYNKSELPRLRWTPELHRYFVQTVEILGGRNQATPKRILQMMGVKGLKISHIKSHLQMYRSME-LERGSSCKHVVTRQA

Arabidopsis top hitse value%identityAlignment
AT1G14600.1 Homeodomain-like superfamily protein3.7e-2064.18Show/hide
Query:  GVRQYNKSELPRLRWTPELHRYFVQTVEILGGRNQATPKRILQMMGVKGLKISHIKSHLQMYRSMEL
        GVR Y +S +PRLRWTPELHR FV  V++LGG+ +ATPK +L++M VKGL ISH+KSHLQMYR   +
Subjt:  GVRQYNKSELPRLRWTPELHRYFVQTVEILGGRNQATPKRILQMMGVKGLKISHIKSHLQMYRSMEL

AT2G02060.1 Homeodomain-like superfamily protein3.3e-2155.91Show/hide
Query:  SFSSERI-GVRQYNKSELPRLRWTPELHRYFVQTVEILGGRNQATPKRILQMMGVKGLKISHIKSHLQMYR-----SMELERGSSCKHVVTRQ
        SF+  +  GVR Y +S +PRLRWTP+LHR FV  VEILGG+++ATPK +L+MM VKGL ISH+KSHLQMYR     ++E    SS   +  RQ
Subjt:  SFSSERI-GVRQYNKSELPRLRWTPELHRYFVQTVEILGGRNQATPKRILQMMGVKGLKISHIKSHLQMYR-----SMELERGSSCKHVVTRQ

AT2G38300.1 myb-like HTH transcriptional regulator family protein6.3e-2057.53Show/hide
Query:  SSERIGVRQYNKSELPRLRWTPELHRYFVQTVEILGGRNQATPKRILQMMGVKGLKISHIKSHLQMYRSMELE
        S ++  VR Y +S++PRLRWTP+LH  FV+ VE LGG+ +ATPK + QMM +KGL I+H+KSHLQMYRS +++
Subjt:  SSERIGVRQYNKSELPRLRWTPELHRYFVQTVEILGGRNQATPKRILQMMGVKGLKISHIKSHLQMYRSMELE

AT2G40260.1 Homeodomain-like superfamily protein2.2e-2065.67Show/hide
Query:  VRQYNKSELPRLRWTPELHRYFVQTVEILGGRNQATPKRILQMMGVKGLKISHIKSHLQMYRSMELE
        VR YN+S+ PRLRWTPELH  F+Q VE LGG ++ATPK +LQ+M VKGL I+H+KSHLQMYRS + +
Subjt:  VRQYNKSELPRLRWTPELHRYFVQTVEILGGRNQATPKRILQMMGVKGLKISHIKSHLQMYRSMELE

AT2G42660.1 Homeodomain-like superfamily protein2.2e-2062.86Show/hide
Query:  VRQYNKSELPRLRWTPELHRYFVQTVEILGGRNQATPKRILQMMGVKGLKISHIKSHLQMYRSMELERGS
        VRQY +S +PRLRWTP+LH  FV+ V+ LGG ++ATPK +L+MM +KGL I+H+KSHLQMYRS +LE  S
Subjt:  VRQYNKSELPRLRWTPELHRYFVQTVEILGGRNQATPKRILQMMGVKGLKISHIKSHLQMYRSMELERGS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAATCCTTTTCATCGGAGAGAATCGGAGTTCGACAGTACAATAAATCGGAACTTCCGCGGCTGCGGTGGACGCCGGAGCTTCATCGCTACTTCGTCCAGACCGTCGA
GATCCTTGGAGGAAGAAATCAAGCAACGCCGAAAAGAATACTGCAAATGATGGGAGTGAAAGGACTGAAGATTTCGCACATAAAAAGCCACCTACAGATGTATAGGAGTA
TGGAATTAGAGCGTGGCAGCAGTTGCAAGCATGTAGTAACGAGACAAGCCATGAAACAGCCCAGAAAAAGAACATCGCACTCATCTGACATCAGAGTCCTCCTCTCTTCA
mRNA sequenceShow/hide mRNA sequence
ATGAAATCCTTTTCATCGGAGAGAATCGGAGTTCGACAGTACAATAAATCGGAACTTCCGCGGCTGCGGTGGACGCCGGAGCTTCATCGCTACTTCGTCCAGACCGTCGA
GATCCTTGGAGGAAGAAATCAAGCAACGCCGAAAAGAATACTGCAAATGATGGGAGTGAAAGGACTGAAGATTTCGCACATAAAAAGCCACCTACAGATGTATAGGAGTA
TGGAATTAGAGCGTGGCAGCAGTTGCAAGCATGTAGTAACGAGACAAGCCATGAAACAGCCCAGAAAAAGAACATCGCACTCATCTGACATCAGAGTCCTCCTCTCTTCA
Protein sequenceShow/hide protein sequence
MKSFSSERIGVRQYNKSELPRLRWTPELHRYFVQTVEILGGRNQATPKRILQMMGVKGLKISHIKSHLQMYRSMELERGSSCKHVVTRQAMKQPRKRTSHSSDIRVLLSS