CuGenDBv2

Gene ID	MS000744
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Vacuolar protein sorting-associated protein 53 A isoform A
Genome location	scaffold1574:97859..99494
RNA-Seq Expression	MS000744
Synteny	MS000744
Gene Ontology terms	GO:0042147 - retrograde transport, endosome to Golgi (biological process) GO:0000938 - GARP complex (cellular component) GO:0005829 - cytosol (cellular component) GO:0010008 - endosome membrane (cellular component)
InterPro domains	IPR039766 - Vacuolar protein sorting-associated protein 53

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0063350.1 vacuolar protein sorting-associated protein 53 A isoform X1 [Cucumis melo var. makuwa]

6.4e-58

90.91

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Query:  QVILSPIDSVADTYRALLPEGTPMEFQRILELKGFKKADQQSILDDFNKHGPGIMQPSV-SPSAPHIVTSTPPAPTISSPASVGVMASREDVLTRAAALG
        +VILSP+DSVADTYRALLPEGTPMEFQRILELKGFKKADQQSILDDFNKHGPGI QPSV SPSAP +V+STPPAPT++SP++VG+MASREDVLTRAAALG
Subjt:  QVILSPIDSVADTYRALLPEGTPMEFQRILELKGFKKADQQSILDDFNKHGPGIMQPSV-SPSAPHIVTSTPPAPTISSPASVGVMASREDVLTRAAALG

Query:  RGAATTGFKRFLALTEAAKDRKDGPFRKLFNP
        RGAATTGFKRFLALTEAAKDRKDGPFRKLFNP
Subjt:  RGAATTGFKRFLALTEAAKDRKDGPFRKLFNP

XP_004149523.1 vacuolar protein sorting-associated protein 53 A [Cucumis sativus]

4.9e-58

91.67

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Query:  QVILSPIDSVADTYRALLPEGTPMEFQRILELKGFKKADQQSILDDFNKHGPGIMQPSV-SPSAPHIVTSTPPAPTISSPASVGVMASREDVLTRAAALG
        +VILSP+DSVADTYRALLPEGTPMEFQRILELKGFKKADQQSILDDFNKHGPGI QPSV SPSAP +V+STPPAPTI+SP++VG+MASREDVLTRAAALG
Subjt:  QVILSPIDSVADTYRALLPEGTPMEFQRILELKGFKKADQQSILDDFNKHGPGIMQPSV-SPSAPHIVTSTPPAPTISSPASVGVMASREDVLTRAAALG

Query:  RGAATTGFKRFLALTEAAKDRKDGPFRKLFNP
        RGAATTGFKRFLALTEAAKDRKDGPFRKLFNP
Subjt:  RGAATTGFKRFLALTEAAKDRKDGPFRKLFNP

XP_008464655.1 PREDICTED: vacuolar protein sorting-associated protein 53 A isoform X1 [Cucumis melo]

6.4e-58

90.91

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Query:  QVILSPIDSVADTYRALLPEGTPMEFQRILELKGFKKADQQSILDDFNKHGPGIMQPSV-SPSAPHIVTSTPPAPTISSPASVGVMASREDVLTRAAALG
        +VILSP+DSVADTYRALLPEGTPMEFQRILELKGFKKADQQSILDDFNKHGPGI QPSV SPSAP +V+STPPAPT++SP++VG+MASREDVLTRAAALG
Subjt:  QVILSPIDSVADTYRALLPEGTPMEFQRILELKGFKKADQQSILDDFNKHGPGIMQPSV-SPSAPHIVTSTPPAPTISSPASVGVMASREDVLTRAAALG

Query:  RGAATTGFKRFLALTEAAKDRKDGPFRKLFNP
        RGAATTGFKRFLALTEAAKDRKDGPFRKLFNP
Subjt:  RGAATTGFKRFLALTEAAKDRKDGPFRKLFNP

XP_022159075.1 vacuolar protein sorting-associated protein 53 A [Momordica charantia]

2.3e-63

99.24

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Query:  QVILSPIDSVADTYRALLPEGTPMEFQRILELKGFKKADQQSILDDFNKHGPGIMQPSVSPSAPHIVTSTPPAPTISSPASVGVMASREDVLTRAAALGR
        +VILSPIDSVADTYRALLPEGTPMEFQRILELKGFKKADQQSILDDFNKHGPGIMQPSVSPSAPHIVTSTPPAPTISSPASVGVMASREDVLTRAAALGR
Subjt:  QVILSPIDSVADTYRALLPEGTPMEFQRILELKGFKKADQQSILDDFNKHGPGIMQPSVSPSAPHIVTSTPPAPTISSPASVGVMASREDVLTRAAALGR

Query:  GAATTGFKRFLALTEAAKDRKDGPFRKLFNP
        GAATTGFKRFLALTEAAKDRKDGPFRKLFNP
Subjt:  GAATTGFKRFLALTEAAKDRKDGPFRKLFNP

XP_038897182.1 vacuolar protein sorting-associated protein 53 A [Benincasa hispida]

4.9e-58

91.67

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Query:  QVILSPIDSVADTYRALLPEGTPMEFQRILELKGFKKADQQSILDDFNKHGPGIMQPSV-SPSAPHIVTSTPPAPTISSPASVGVMASREDVLTRAAALG
        +VILSPIDSVADTYRALLPEGTPMEFQRILELKGFKKADQQSILDDFNKHGPGI QPSV SPSAP +V+STPPAPT++SP++VG+MASREDVLTRAAALG
Subjt:  QVILSPIDSVADTYRALLPEGTPMEFQRILELKGFKKADQQSILDDFNKHGPGIMQPSV-SPSAPHIVTSTPPAPTISSPASVGVMASREDVLTRAAALG

Query:  RGAATTGFKRFLALTEAAKDRKDGPFRKLFNP
        RGAATTGFKRFLALTEAAKDRKDGPFRKLFNP
Subjt:  RGAATTGFKRFLALTEAAKDRKDGPFRKLFNP

TrEMBL top hits

e value

%identity

Alignment

A0A0A0L4A5 Uncharacterized protein

2.4e-58

91.67

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Query:  QVILSPIDSVADTYRALLPEGTPMEFQRILELKGFKKADQQSILDDFNKHGPGIMQPSV-SPSAPHIVTSTPPAPTISSPASVGVMASREDVLTRAAALG
        +VILSP+DSVADTYRALLPEGTPMEFQRILELKGFKKADQQSILDDFNKHGPGI QPSV SPSAP +V+STPPAPTI+SP++VG+MASREDVLTRAAALG
Subjt:  QVILSPIDSVADTYRALLPEGTPMEFQRILELKGFKKADQQSILDDFNKHGPGIMQPSV-SPSAPHIVTSTPPAPTISSPASVGVMASREDVLTRAAALG

Query:  RGAATTGFKRFLALTEAAKDRKDGPFRKLFNP
        RGAATTGFKRFLALTEAAKDRKDGPFRKLFNP
Subjt:  RGAATTGFKRFLALTEAAKDRKDGPFRKLFNP

A0A1S4E4R8 vacuolar protein sorting-associated protein 53 A isoform X2

3.1e-58

90.91

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Query:  QVILSPIDSVADTYRALLPEGTPMEFQRILELKGFKKADQQSILDDFNKHGPGIMQPSV-SPSAPHIVTSTPPAPTISSPASVGVMASREDVLTRAAALG
        +VILSP+DSVADTYRALLPEGTPMEFQRILELKGFKKADQQSILDDFNKHGPGI QPSV SPSAP +V+STPPAPT++SP++VG+MASREDVLTRAAALG
Subjt:  QVILSPIDSVADTYRALLPEGTPMEFQRILELKGFKKADQQSILDDFNKHGPGIMQPSV-SPSAPHIVTSTPPAPTISSPASVGVMASREDVLTRAAALG

Query:  RGAATTGFKRFLALTEAAKDRKDGPFRKLFNP
        RGAATTGFKRFLALTEAAKDRKDGPFRKLFNP
Subjt:  RGAATTGFKRFLALTEAAKDRKDGPFRKLFNP

A0A5A7V7Y3 Vacuolar protein sorting-associated protein 53 A isoform X1

3.1e-58

90.91

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Query:  QVILSPIDSVADTYRALLPEGTPMEFQRILELKGFKKADQQSILDDFNKHGPGIMQPSV-SPSAPHIVTSTPPAPTISSPASVGVMASREDVLTRAAALG
        +VILSP+DSVADTYRALLPEGTPMEFQRILELKGFKKADQQSILDDFNKHGPGI QPSV SPSAP +V+STPPAPT++SP++VG+MASREDVLTRAAALG
Subjt:  QVILSPIDSVADTYRALLPEGTPMEFQRILELKGFKKADQQSILDDFNKHGPGIMQPSV-SPSAPHIVTSTPPAPTISSPASVGVMASREDVLTRAAALG

Query:  RGAATTGFKRFLALTEAAKDRKDGPFRKLFNP
        RGAATTGFKRFLALTEAAKDRKDGPFRKLFNP
Subjt:  RGAATTGFKRFLALTEAAKDRKDGPFRKLFNP

A0A5D3DXS3 Vacuolar protein sorting-associated protein 53 A isoform X1

3.1e-58

90.91

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Query:  QVILSPIDSVADTYRALLPEGTPMEFQRILELKGFKKADQQSILDDFNKHGPGIMQPSV-SPSAPHIVTSTPPAPTISSPASVGVMASREDVLTRAAALG
        +VILSP+DSVADTYRALLPEGTPMEFQRILELKGFKKADQQSILDDFNKHGPGI QPSV SPSAP +V+STPPAPT++SP++VG+MASREDVLTRAAALG
Subjt:  QVILSPIDSVADTYRALLPEGTPMEFQRILELKGFKKADQQSILDDFNKHGPGIMQPSV-SPSAPHIVTSTPPAPTISSPASVGVMASREDVLTRAAALG

Query:  RGAATTGFKRFLALTEAAKDRKDGPFRKLFNP
        RGAATTGFKRFLALTEAAKDRKDGPFRKLFNP
Subjt:  RGAATTGFKRFLALTEAAKDRKDGPFRKLFNP

A0A6J1DXM1 vacuolar protein sorting-associated protein 53 A

1.1e-63

99.24

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Query:  QVILSPIDSVADTYRALLPEGTPMEFQRILELKGFKKADQQSILDDFNKHGPGIMQPSVSPSAPHIVTSTPPAPTISSPASVGVMASREDVLTRAAALGR
        +VILSPIDSVADTYRALLPEGTPMEFQRILELKGFKKADQQSILDDFNKHGPGIMQPSVSPSAPHIVTSTPPAPTISSPASVGVMASREDVLTRAAALGR
Subjt:  QVILSPIDSVADTYRALLPEGTPMEFQRILELKGFKKADQQSILDDFNKHGPGIMQPSVSPSAPHIVTSTPPAPTISSPASVGVMASREDVLTRAAALGR

Query:  GAATTGFKRFLALTEAAKDRKDGPFRKLFNP
        GAATTGFKRFLALTEAAKDRKDGPFRKLFNP
Subjt:  GAATTGFKRFLALTEAAKDRKDGPFRKLFNP

SwissProt top hits

e value

%identity

Alignment

F4I7Y2 Vacuolar protein sorting-associated protein 53 B

3.9e-26

59.4

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Query:  VAQVILSPIDSVADTYRALLPEGTPMEFQRILELKGFKKADQQSILDDFNKHGPGIMQPSVSPSAPHIVTSTPPAPTISSPASVGVMASREDVLTRAAAL
        V +VI SPI +V DTYRAL PE TPMEFQRIL LKG  KA+QQSILDDFN H   I Q SV+   P    + P A T  +PA V   A+ E+VLTRAA+ 
Subjt:  VAQVILSPIDSVADTYRALLPEGTPMEFQRILELKGFKKADQQSILDDFNKHGPGIMQPSVSPSAPHIVTSTPPAPTISSPASVGVMASREDVLTRAAAL

Query:  GRGAATTGFKRFLALTEAAKDRKDGPFRKLFNP
           AATT F +  ALT AAKDR   PFRKLFNP
Subjt:  GRGAATTGFKRFLALTEAAKDRKDGPFRKLFNP

Q0WQF4 Vacuolar protein sorting-associated protein 53 A

5.8e-46

68.83

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Query:  STKSLKSTKVSPKYPDPIFVAQVILSPIDSVADTYRALLPEGTPMEFQRILELKGFKKADQQSILDDFNKHGPGIMQPSVSPSAPHIVTSTPPAP--TIS
        ST +  S  VS +      + +VILSPIDSVADTYRAL PEGTPMEFQRILELKG KKADQQSILDDFNKHGPG  Q SV+ + P  +  TPPAP   I+
Subjt:  STKSLKSTKVSPKYPDPIFVAQVILSPIDSVADTYRALLPEGTPMEFQRILELKGFKKADQQSILDDFNKHGPGIMQPSVSPSAPHIVTSTPPAP--TIS

Query:  SPA-SVGVMASREDVLTRAAALGRGAATTGFKRFLALTEAAKDRKDGPFRKLFN
        +PA + G +A+ EDVLTRAAALGRGAA+TGFK+F+ALTEAAKDRKDGP R+LFN
Subjt:  SPA-SVGVMASREDVLTRAAALGRGAATTGFKRFLALTEAAKDRKDGPFRKLFN

Arabidopsis top hits

e value

%identity

Alignment

AT1G50500.1 Membrane trafficking VPS53 family protein

4.1e-47

68.83

Show/hide

Query:  STKSLKSTKVSPKYPDPIFVAQVILSPIDSVADTYRALLPEGTPMEFQRILELKGFKKADQQSILDDFNKHGPGIMQPSVSPSAPHIVTSTPPAP--TIS
        ST +  S  VS +      + +VILSPIDSVADTYRAL PEGTPMEFQRILELKG KKADQQSILDDFNKHGPG  Q SV+ + P  +  TPPAP   I+
Subjt:  STKSLKSTKVSPKYPDPIFVAQVILSPIDSVADTYRALLPEGTPMEFQRILELKGFKKADQQSILDDFNKHGPGIMQPSVSPSAPHIVTSTPPAP--TIS

Query:  SPA-SVGVMASREDVLTRAAALGRGAATTGFKRFLALTEAAKDRKDGPFRKLFN
        +PA + G +A+ EDVLTRAAALGRGAA+TGFK+F+ALTEAAKDRKDGP R+LFN
Subjt:  SPA-SVGVMASREDVLTRAAALGRGAATTGFKRFLALTEAAKDRKDGPFRKLFN

AT1G50500.2 Membrane trafficking VPS53 family protein

4.1e-47

68.83

Show/hide

Query:  STKSLKSTKVSPKYPDPIFVAQVILSPIDSVADTYRALLPEGTPMEFQRILELKGFKKADQQSILDDFNKHGPGIMQPSVSPSAPHIVTSTPPAP--TIS
        ST +  S  VS +      + +VILSPIDSVADTYRAL PEGTPMEFQRILELKG KKADQQSILDDFNKHGPG  Q SV+ + P  +  TPPAP   I+
Subjt:  STKSLKSTKVSPKYPDPIFVAQVILSPIDSVADTYRALLPEGTPMEFQRILELKGFKKADQQSILDDFNKHGPGIMQPSVSPSAPHIVTSTPPAP--TIS

Query:  SPA-SVGVMASREDVLTRAAALGRGAATTGFKRFLALTEAAKDRKDGPFRKLFN
        +PA + G +A+ EDVLTRAAALGRGAA+TGFK+F+ALTEAAKDRKDGP R+LFN
Subjt:  SPA-SVGVMASREDVLTRAAALGRGAATTGFKRFLALTEAAKDRKDGPFRKLFN

AT1G50970.1 Membrane trafficking VPS53 family protein

2.8e-27

59.4

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Query:  VAQVILSPIDSVADTYRALLPEGTPMEFQRILELKGFKKADQQSILDDFNKHGPGIMQPSVSPSAPHIVTSTPPAPTISSPASVGVMASREDVLTRAAAL
        V +VI SPI +V DTYRAL PE TPMEFQRIL LKG  KA+QQSILDDFN H   I Q SV+   P    + P A T  +PA V   A+ E+VLTRAA+ 
Subjt:  VAQVILSPIDSVADTYRALLPEGTPMEFQRILELKGFKKADQQSILDDFNKHGPGIMQPSVSPSAPHIVTSTPPAPTISSPASVGVMASREDVLTRAAAL

Query:  GRGAATTGFKRFLALTEAAKDRKDGPFRKLFNP
           AATT F +  ALT AAKDR   PFRKLFNP
Subjt:  GRGAATTGFKRFLALTEAAKDRKDGPFRKLFNP

Sequences

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CDS sequence

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CTGAAATCTGGCTGCAAGCTGGTTGATACTAATAATTCTCTAACTCAATCAACCAAAAGTCTCAAGTCTACTAAAGTTTCCCCTAAATATCCTGACCCAATCTTTGTTGC
ACAGGTTATACTTTCTCCCATCGATTCTGTGGCAGATACATATCGTGCACTATTGCCAGAAGGAACGCCAATGGAGTTTCAGCGAATTTTGGAACTTAAGGGATTTAAAA
AAGCTGATCAGCAAAGCATACTCGACGATTTCAACAAACACGGGCCAGGGATCATGCAGCCTTCGGTTTCACCATCAGCTCCACACATCGTCACCAGCACCCCTCCAGCT
CCAACAATTTCCAGTCCTGCTTCGGTCGGGGTCATGGCGTCCAGGGAGGATGTTCTTACCAGAGCAGCCGCACTAGGACGAGGAGCTGCCACCACAGGATTCAAAAGATT
CCTGGCTCTCACTGAAGCTGCAAAAGACAGGAAAGATGGACCTTTCAGAAAACTTTTCAATCCT

mRNA sequence

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Protein sequence

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LKSGCKLVDTNNSLTQSTKSLKSTKVSPKYPDPIFVAQVILSPIDSVADTYRALLPEGTPMEFQRILELKGFKKADQQSILDDFNKHGPGIMQPSVSPSAPHIVTSTPPA
PTISSPASVGVMASREDVLTRAAALGRGAATTGFKRFLALTEAAKDRKDGPFRKLFNP

MS000744 (gene) of Bitter gourd (TR) v1 genome