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MS000774 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS000774
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Description60S ribosomal protein L18a-like protein
Genome locationscaffold1574:366996..367211
RNA-Seq ExpressionMS000774
SyntenyMS000774
Gene Ontology termsGO:0005840 - ribosome (cellular component)
GO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008452440.1 PREDICTED: 60S ribosomal protein L18a-like protein [Cucumis melo]1.7e-2381.94Show/hide
Query:  MSQEEKAAAAAGVVVHHHHESNSGHPQYGTFQGVANYPPVGFPQPIRPPGASDSYDPSQSQPYAHAYQAVPG
        MSQE+K +AA GVVVHHHHESNS HP YGTFQGVANYPPV FPQP RPPG SDS DPSQ Q YAH YQAVPG
Subjt:  MSQEEKAAAAAGVVVHHHHESNSGHPQYGTFQGVANYPPVGFPQPIRPPGASDSYDPSQSQPYAHAYQAVPG
XP_022135554.1 60S ribosomal protein L18a-like protein [Momordica charantia]4.0e-33100Show/hide
Query:  MSQEEKAAAAAGVVVHHHHESNSGHPQYGTFQGVANYPPVGFPQPIRPPGASDSYDPSQSQPYAHAYQAVPG
        MSQEEKAAAAAGVVVHHHHESNSGHPQYGTFQGVANYPPVGFPQPIRPPGASDSYDPSQSQPYAHAYQAVPG
Subjt:  MSQEEKAAAAAGVVVHHHHESNSGHPQYGTFQGVANYPPVGFPQPIRPPGASDSYDPSQSQPYAHAYQAVPG
XP_022976878.1 60S ribosomal protein L18a-like protein [Cucurbita maxima]4.5e-2176.39Show/hide
Query:  MSQEEKAAAAAGVVVHHHHESNSGHPQYGTFQGVANYPPVGFPQPIRPPGASDSYDPSQSQPYAHAYQAVPG
        MSQE+K +AA GVVVHHHHE N GHP YGTFQGVANYPPVGFPQP RPPG SD  D SQ Q YAH YQ V G
Subjt:  MSQEEKAAAAAGVVVHHHHESNSGHPQYGTFQGVANYPPVGFPQPIRPPGASDSYDPSQSQPYAHAYQAVPG
XP_023536200.1 60S ribosomal protein L18a-like protein [Cucurbita pepo subsp. pepo]3.5e-2176.39Show/hide
Query:  MSQEEKAAAAAGVVVHHHHESNSGHPQYGTFQGVANYPPVGFPQPIRPPGASDSYDPSQSQPYAHAYQAVPG
        MSQE+K +AA GVVVHHHHE N GHP YGTFQGVANYPPVGFPQP RPPG SD  D SQ Q YAH YQ V G
Subjt:  MSQEEKAAAAAGVVVHHHHESNSGHPQYGTFQGVANYPPVGFPQPIRPPGASDSYDPSQSQPYAHAYQAVPG
XP_038896754.1 60S ribosomal protein L18a-like protein [Benincasa hispida]4.0e-2584.72Show/hide
Query:  MSQEEKAAAAAGVVVHHHHESNSGHPQYGTFQGVANYPPVGFPQPIRPPGASDSYDPSQSQPYAHAYQAVPG
        MSQE+K +AA GVVVHHHHESNSGHP YGTFQGVANYPPVGFPQP RPPG SDS DPSQ Q YAH YQAVPG
Subjt:  MSQEEKAAAAAGVVVHHHHESNSGHPQYGTFQGVANYPPVGFPQPIRPPGASDSYDPSQSQPYAHAYQAVPG
TrEMBL top hitse value%identityAlignment
A0A1S3BUZ1 60S ribosomal protein L18a-like protein8.1e-2481.94Show/hide
Query:  MSQEEKAAAAAGVVVHHHHESNSGHPQYGTFQGVANYPPVGFPQPIRPPGASDSYDPSQSQPYAHAYQAVPG
        MSQE+K +AA GVVVHHHHESNS HP YGTFQGVANYPPV FPQP RPPG SDS DPSQ Q YAH YQAVPG
Subjt:  MSQEEKAAAAAGVVVHHHHESNSGHPQYGTFQGVANYPPVGFPQPIRPPGASDSYDPSQSQPYAHAYQAVPG
A0A5D3D9U1 60S ribosomal protein L18a-like protein8.1e-2481.94Show/hide
Query:  MSQEEKAAAAAGVVVHHHHESNSGHPQYGTFQGVANYPPVGFPQPIRPPGASDSYDPSQSQPYAHAYQAVPG
        MSQE+K +AA GVVVHHHHESNS HP YGTFQGVANYPPV FPQP RPPG SDS DPSQ Q YAH YQAVPG
Subjt:  MSQEEKAAAAAGVVVHHHHESNSGHPQYGTFQGVANYPPVGFPQPIRPPGASDSYDPSQSQPYAHAYQAVPG
A0A6J1C1R6 60S ribosomal protein L18a-like protein1.9e-33100Show/hide
Query:  MSQEEKAAAAAGVVVHHHHESNSGHPQYGTFQGVANYPPVGFPQPIRPPGASDSYDPSQSQPYAHAYQAVPG
        MSQEEKAAAAAGVVVHHHHESNSGHPQYGTFQGVANYPPVGFPQPIRPPGASDSYDPSQSQPYAHAYQAVPG
Subjt:  MSQEEKAAAAAGVVVHHHHESNSGHPQYGTFQGVANYPPVGFPQPIRPPGASDSYDPSQSQPYAHAYQAVPG
A0A6J1F8P0 60S ribosomal protein L18a-like protein4.9e-2175Show/hide
Query:  MSQEEKAAAAAGVVVHHHHESNSGHPQYGTFQGVANYPPVGFPQPIRPPGASDSYDPSQSQPYAHAYQAVPG
        MSQE+K +AA GVVVHHHHE N GHP YGTFQGVANYPPVGFPQP RPPG SD  D SQ + YAH YQ V G
Subjt:  MSQEEKAAAAAGVVVHHHHESNSGHPQYGTFQGVANYPPVGFPQPIRPPGASDSYDPSQSQPYAHAYQAVPG
A0A6J1INF5 60S ribosomal protein L18a-like protein2.2e-2176.39Show/hide
Query:  MSQEEKAAAAAGVVVHHHHESNSGHPQYGTFQGVANYPPVGFPQPIRPPGASDSYDPSQSQPYAHAYQAVPG
        MSQE+K +AA GVVVHHHHE N GHP YGTFQGVANYPPVGFPQP RPPG SD  D SQ Q YAH YQ V G
Subjt:  MSQEEKAAAAAGVVVHHHHESNSGHPQYGTFQGVANYPPVGFPQPIRPPGASDSYDPSQSQPYAHAYQAVPG
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G17080.1 Ribosomal protein L18ae family4.3e-0954.24Show/hide
Query:  ESNSGHPQYGTFQGVANYPP-------VGFPQPIRPPGASDSYDPSQSQPYAHAYQAVP
        E  + H QYGTFQGV+NYPP        GFPQP  PPG  DS  P     YAH YQ VP
Subjt:  ESNSGHPQYGTFQGVANYPP-------VGFPQPIRPPGASDSYDPSQSQPYAHAYQAVP

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGCCAGGAAGAGAAAGCCGCCGCCGCCGCAGGGGTCGTCGTCCACCACCATCACGAATCCAATTCCGGCCACCCTCAGTACGGCACCTTCCAAGGCGTCGCCAATTA
TCCTCCGGTCGGATTTCCCCAGCCTATTCGCCCACCCGGCGCCTCTGACTCCTATGATCCTTCTCAATCTCAGCCCTACGCTCATGCCTATCAAGCTGTCCCTGGT
mRNA sequenceShow/hide mRNA sequence
ATGAGCCAGGAAGAGAAAGCCGCCGCCGCCGCAGGGGTCGTCGTCCACCACCATCACGAATCCAATTCCGGCCACCCTCAGTACGGCACCTTCCAAGGCGTCGCCAATTA
TCCTCCGGTCGGATTTCCCCAGCCTATTCGCCCACCCGGCGCCTCTGACTCCTATGATCCTTCTCAATCTCAGCCCTACGCTCATGCCTATCAAGCTGTCCCTGGT
Protein sequenceShow/hide protein sequence
MSQEEKAAAAAGVVVHHHHESNSGHPQYGTFQGVANYPPVGFPQPIRPPGASDSYDPSQSQPYAHAYQAVPG