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MS000799 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS000799
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionE3 ubiquitin-protein ligase RHA2A
Genome locationscaffold902:108351..108686
RNA-Seq ExpressionMS000799
SyntenyMS000799
Gene Ontology termsNA
InterPro domainsIPR001841 - Zinc finger, RING-type
IPR013083 - Zinc finger, RING/FYVE/PHD-type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF8096272.1 hypothetical protein N665_0313s0038 [Sinapis alba]9.9e-2350.78Show/hide
Query:  MGLQSQLNDFSSDSLPLFFLSLIASSLSHLRSFL--FPRSPRASHS-------------RLDLNPVLSYRH-PHDGASSASDCVVCLSPLSAGDRVSRLP
        MGLQ QL+D SSDS+PL  L+LIA+   H+RSF   F  S  AS S             +L LN + SYR+   D A++ASDC+VCLS L  G+ V +L 
Subjt:  MGLQSQLNDFSSDSLPLFFLSLIASSLSHLRSFL--FPRSPRASHS-------------RLDLNPVLSYRH-PHDGASSASDCVVCLSPLSAGDRVSRLP

Query:  CRHVFHTHCFHACLRHLNFNCPLCRSPI
        CRHVFH  C    + HLNFNCPLCRSP+
Subjt:  CRHVFHTHCFHACLRHLNFNCPLCRSPI

KAG2302105.1 hypothetical protein Bca52824_030756 [Brassica carinata]1.1e-2451.18Show/hide
Query:  MGLQSQLNDFSSDSLPLFFLSLIASSLSHLRSFL--FPRSPRASHS-------------RLDLNPVLSYRHPHDGASSASDCVVCLSPLSAGDRVSRLPC
        MGLQ QL+D SSDS+PL  L+L+A+   HLRSF   F  S  AS S             +L LN + SYRH  D  ++ASDC+VCLS L  G+ V +L C
Subjt:  MGLQSQLNDFSSDSLPLFFLSLIASSLSHLRSFL--FPRSPRASHS-------------RLDLNPVLSYRHPHDGASSASDCVVCLSPLSAGDRVSRLPC

Query:  RHVFHTHCFHACLRHLNFNCPLCRSPI
        RHVFH  C    ++HLNFNCPLCRSP+
Subjt:  RHVFHTHCFHACLRHLNFNCPLCRSPI

KAG7032532.1 E3 ubiquitin-protein ligase RHA2B, partial [Cucurbita argyrosperma subsp. argyrosperma]2.7e-2863.87Show/hide
Query:  MGLQSQLNDFSSDSLPLFFLSLIASSLSHL-RSFLFPRSPRAS------HSRLDLNPVLSYRHPHDGASSASDCVVCLSPLSAGDRVSRLPCRHVFHTHC
        MGLQSQLNDFSSDSLPLFFLSL+A+ LS L RSFL   +P         H  L LN +LS+R+  D  S+ASDCVVCL PLSAG+ V RLPC H+FH  C
Subjt:  MGLQSQLNDFSSDSLPLFFLSLIASSLSHL-RSFLFPRSPRAS------HSRLDLNPVLSYRHPHDGASSASDCVVCLSPLSAGDRVSRLPCRHVFHTHC

Query:  FHACLRHLNFNCPLCRSPI
            L HLNFNCPLCRSPI
Subjt:  FHACLRHLNFNCPLCRSPI

XP_010096722.1 E3 ubiquitin-protein ligase RHA2A [Morus notabilis]8.9e-2449.24Show/hide
Query:  MGLQSQLNDFSSDSLPLFFLSLIASSLSHLRSFLFPRSPR--------------------ASHSRLDLNPVLSYRHPHDGASSASDCVVCLSPLSAGDRV
        MGLQSQLND SSDS+PL  +++IA+ +S++RS L    P+                        +L+LN V SYR+   GA   SDCVVCLS L+ GD+V
Subjt:  MGLQSQLNDFSSDSLPLFFLSLIASSLSHLRSFLFPRSPR--------------------ASHSRLDLNPVLSYRHPHDGASSASDCVVCLSPLSAGDRV

Query:  SRLPCRHVFHTHCFHACLRHLNFNCPLCRSPI
         RL CRHVFH  CF   L HLNF+CPLCRSP+
Subjt:  SRLPCRHVFHTHCFHACLRHLNFNCPLCRSPI

XP_022006424.1 E3 ubiquitin-protein ligase RHA2B [Helianthus annuus]2.6e-2352.42Show/hide
Query:  MGLQSQLNDFSSDSLPLFFLSLIASSLSHLRSFLF------------PRSPRASHSRLDLNPVLSYRHPHDGASSASDCVVCLSPLSAGDRVSRLPCRHV
        MGLQ+ L D SSDSLPL  L+ IA+++S+LRS  F            P     SH  L+LN +LSY+H  D     SDCVVCL+ L+AG+ V +LPC HV
Subjt:  MGLQSQLNDFSSDSLPLFFLSLIASSLSHLRSFLF------------PRSPRASHSRLDLNPVLSYRHPHDGASSASDCVVCLSPLSAGDRVSRLPCRHV

Query:  FHTHCFHACLRHLNFNCPLCRSPI
        FH  CF   L HLNFNCPLCRSP+
Subjt:  FHTHCFHACLRHLNFNCPLCRSPI

TrEMBL top hitse value%identityAlignment
A0A0N9WV24 RING finger protein1.1e-2245.8Show/hide
Query:  MGLQSQLNDFSSDSLPLFFLSLIASSLSHLRSFLFPRSPRAS-------------------HSRLDLNPVLSYRHPHDGASSASDCVVCLSPLSAGDRVS
        MGLQ QL+D SSDS+PL  ++L+A+   H+RSF    S  +S                     +L LN + SY + H  A++ASDC+VCLS L  G+ V 
Subjt:  MGLQSQLNDFSSDSLPLFFLSLIASSLSHLRSFLFPRSPRAS-------------------HSRLDLNPVLSYRHPHDGASSASDCVVCLSPLSAGDRVS

Query:  RLPCRHVFHTHCFHACLRHLNFNCPLCRSPI
        +L CRHVFH  C    L+HLNFNCPLCRSP+
Subjt:  RLPCRHVFHTHCFHACLRHLNFNCPLCRSPI

A0A251SN01 Putative zinc finger, RING/FYVE/PHD-type1.3e-2352.42Show/hide
Query:  MGLQSQLNDFSSDSLPLFFLSLIASSLSHLRSFLF------------PRSPRASHSRLDLNPVLSYRHPHDGASSASDCVVCLSPLSAGDRVSRLPCRHV
        MGLQ+ L D SSDSLPL  L+ IA+++S+LRS  F            P     SH  L+LN +LSY+H  D     SDCVVCL+ L+AG+ V +LPC HV
Subjt:  MGLQSQLNDFSSDSLPLFFLSLIASSLSHLRSFLF------------PRSPRASHSRLDLNPVLSYRHPHDGASSASDCVVCLSPLSAGDRVSRLPCRHV

Query:  FHTHCFHACLRHLNFNCPLCRSPI
        FH  CF   L HLNFNCPLCRSP+
Subjt:  FHTHCFHACLRHLNFNCPLCRSPI

A0A6J0JMU8 E3 ubiquitin-protein ligase RHA2B-like1.8e-2244.7Show/hide
Query:  MGLQSQLNDFSSDSLPLFFLSLIASSLSHLRSFLFPRSPRAS--------------------HSRLDLNPVLSYRHPHDGASSASDCVVCLSPLSAGDRV
        MGLQ QL+D SSDS+PL  ++L+A+   H+RSF    S  +S                      +L LN + SY + H+ A+++SDC+VCLS L  G+ V
Subjt:  MGLQSQLNDFSSDSLPLFFLSLIASSLSHLRSFLFPRSPRAS--------------------HSRLDLNPVLSYRHPHDGASSASDCVVCLSPLSAGDRV

Query:  SRLPCRHVFHTHCFHACLRHLNFNCPLCRSPI
         +L CRHVFH  C    L+HLNFNCPLCRSP+
Subjt:  SRLPCRHVFHTHCFHACLRHLNFNCPLCRSPI

M4DLT4 RING-type domain-containing protein1.8e-2248.09Show/hide
Query:  MGLQSQLNDFSSDSLPLFFLSLIASSLSHLRSFLFPRSPR--------ASHS-----------RLDLNPVLSYRHPHDGASSASDCVVCLSPLSAGDRVS
        MGLQ QL+D SSDS+PL  ++LIA+   HLRSF    S          AS S           +L LN +LSY +  + AS++SDC+VCLS L  G++V 
Subjt:  MGLQSQLNDFSSDSLPLFFLSLIASSLSHLRSFLFPRSPR--------ASHS-----------RLDLNPVLSYRHPHDGASSASDCVVCLSPLSAGDRVS

Query:  RLPCRHVFHTHCFHACLRHLNFNCPLCRSPI
        +L CRHVFH  C    ++HLNFNCPLCRSP+
Subjt:  RLPCRHVFHTHCFHACLRHLNFNCPLCRSPI

W9RAQ2 E3 ubiquitin-protein ligase RHA2A4.3e-2449.24Show/hide
Query:  MGLQSQLNDFSSDSLPLFFLSLIASSLSHLRSFLFPRSPR--------------------ASHSRLDLNPVLSYRHPHDGASSASDCVVCLSPLSAGDRV
        MGLQSQLND SSDS+PL  +++IA+ +S++RS L    P+                        +L+LN V SYR+   GA   SDCVVCLS L+ GD+V
Subjt:  MGLQSQLNDFSSDSLPLFFLSLIASSLSHLRSFLFPRSPR--------------------ASHSRLDLNPVLSYRHPHDGASSASDCVVCLSPLSAGDRV

Query:  SRLPCRHVFHTHCFHACLRHLNFNCPLCRSPI
         RL CRHVFH  CF   L HLNF+CPLCRSP+
Subjt:  SRLPCRHVFHTHCFHACLRHLNFNCPLCRSPI

SwissProt top hitse value%identityAlignment
Q8RXD3 E3 ubiquitin-protein ligase AIP24.3e-0533.33Show/hide
Query:  PRSPRASHSRLDLNPVLSYRHP-HDGASSASDCVVCLSPLSAGDRVSRLPCRHVFHTHCFHACLRHLNFNCPLCR
        PR+P AS   ++  PV+ +         + ++C +C   L  GD++  LPC+H FH  C    L   N +CP+CR
Subjt:  PRSPRASHSRLDLNPVLSYRHP-HDGASSASDCVVCLSPLSAGDRVSRLPCRHVFHTHCFHACLRHLNFNCPLCR

Q9DBU5 E3 ubiquitin-protein ligase RNF61.5e-0540.68Show/hide
Query:  HPHDGASS--ASDCVVCLSPLSAGDRVSRLPCRHVFHTHCFHACLRHLNFNCPLCRSPI
        +  DG  S     C VC+S   AG+++ +LPC H FH HC    L   N  CP+CR P+
Subjt:  HPHDGASS--ASDCVVCLSPLSAGDRVSRLPCRHVFHTHCFHACLRHLNFNCPLCRSPI

Q9Y252 E3 ubiquitin-protein ligase RNF66.7e-0637.29Show/hide
Query:  YRHPHDGASSASDCVVCLSPLSAGDRVSRLPCRHVFHTHCFHACLRHLNFNCPLCRSPI
        Y H    +     C VC+S    G+++ +LPC H FH HC    L   N  CP+CR P+
Subjt:  YRHPHDGASSASDCVVCLSPLSAGDRVSRLPCRHVFHTHCFHACLRHLNFNCPLCRSPI

Q9ZT50 E3 ubiquitin-protein ligase RHA2A1.1e-2144.7Show/hide
Query:  MGLQSQLNDFSSDSLPLFFLSLIASSLSHLRSFLFPRSPRASHS--------------------RLDLNPVLSYRHPHDGASSASDCVVCLSPLSAGDRV
        MGLQ QL+D SSDS+PL  LSL+A  ++HLRSFL   + +++ +                    +L LN + SYR   DG    SDCVVCLS L  G+ V
Subjt:  MGLQSQLNDFSSDSLPLFFLSLIASSLSHLRSFLFPRSPRASHS--------------------RLDLNPVLSYRHPHDGASSASDCVVCLSPLSAGDRV

Query:  SRLPCRHVFHTHCFHACLRHLNFNCPLCRSPI
         +L CRHVFH  C    L   NF CPLCRS +
Subjt:  SRLPCRHVFHTHCFHACLRHLNFNCPLCRSPI

Q9ZU51 E3 ubiquitin-protein ligase RHA2B2.4e-2450Show/hide
Query:  MGLQSQLNDFSSDSLPLFFLSLIASSLSHLRS-FLFPRSP---------RASHSRLDLNPVLSYRHPHDGASSASDCVVCLSPLSAGDRVSRLPCRHVFH
        MGLQ QL+D SSDS+PL  L+L+A+   H+RS  LFP S               +L+LN + SYR+     ++ASDC+VCLS L  G+ V +L CRHVFH
Subjt:  MGLQSQLNDFSSDSLPLFFLSLIASSLSHLRS-FLFPRSP---------RASHSRLDLNPVLSYRHPHDGASSASDCVVCLSPLSAGDRVSRLPCRHVFH

Query:  THCFHACLRHLNFNCPLCRSPI
          C    L+HLNFNCPLCRSP+
Subjt:  THCFHACLRHLNFNCPLCRSPI

Arabidopsis top hitse value%identityAlignment
AT1G15100.1 RING-H2 finger A2A8.1e-2344.7Show/hide
Query:  MGLQSQLNDFSSDSLPLFFLSLIASSLSHLRSFLFPRSPRASHS--------------------RLDLNPVLSYRHPHDGASSASDCVVCLSPLSAGDRV
        MGLQ QL+D SSDS+PL  LSL+A  ++HLRSFL   + +++ +                    +L LN + SYR   DG    SDCVVCLS L  G+ V
Subjt:  MGLQSQLNDFSSDSLPLFFLSLIASSLSHLRSFLFPRSPRASHS--------------------RLDLNPVLSYRHPHDGASSASDCVVCLSPLSAGDRV

Query:  SRLPCRHVFHTHCFHACLRHLNFNCPLCRSPI
         +L CRHVFH  C    L   NF CPLCRS +
Subjt:  SRLPCRHVFHTHCFHACLRHLNFNCPLCRSPI

AT2G01150.1 RING-H2 finger protein 2B1.7e-2550Show/hide
Query:  MGLQSQLNDFSSDSLPLFFLSLIASSLSHLRS-FLFPRSP---------RASHSRLDLNPVLSYRHPHDGASSASDCVVCLSPLSAGDRVSRLPCRHVFH
        MGLQ QL+D SSDS+PL  L+L+A+   H+RS  LFP S               +L+LN + SYR+     ++ASDC+VCLS L  G+ V +L CRHVFH
Subjt:  MGLQSQLNDFSSDSLPLFFLSLIASSLSHLRS-FLFPRSP---------RASHSRLDLNPVLSYRHPHDGASSASDCVVCLSPLSAGDRVSRLPCRHVFH

Query:  THCFHACLRHLNFNCPLCRSPI
          C    L+HLNFNCPLCRSP+
Subjt:  THCFHACLRHLNFNCPLCRSPI

AT3G30460.1 RING/U-box superfamily protein5.2e-0646.51Show/hide
Query:  CVVCLSPLSAGDRVSRLPCRHVFHTHCFHACLRHLNFNCPLCR
        C +C   L+A +R+S LPCRH +H  C    L + N  CPLCR
Subjt:  CVVCLSPLSAGDRVSRLPCRHVFHTHCFHACLRHLNFNCPLCR

AT5G20910.1 RING/U-box superfamily protein3.1e-0633.33Show/hide
Query:  PRSPRASHSRLDLNPVLSYRHP-HDGASSASDCVVCLSPLSAGDRVSRLPCRHVFHTHCFHACLRHLNFNCPLCR
        PR+P AS   ++  PV+ +         + ++C +C   L  GD++  LPC+H FH  C    L   N +CP+CR
Subjt:  PRSPRASHSRLDLNPVLSYRHP-HDGASSASDCVVCLSPLSAGDRVSRLPCRHVFHTHCFHACLRHLNFNCPLCR

AT5G54990.1 RING/U-box superfamily protein3.1e-0646.81Show/hide
Query:  ASDCVVCLSPLSAGDRVSRLPCRHVFHTHCFHACLRHLNFNCPLCRS
        A DC +CL+ LS+G    +LPC HVFH  C    L+  N +CP+CR+
Subjt:  ASDCVVCLSPLSAGDRVSRLPCRHVFHTHCFHACLRHLNFNCPLCRS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGTTTACAGAGCCAACTCAACGACTTCTCCTCCGATTCCCTTCCCCTCTTCTTCCTCTCCCTCATCGCCTCTTCCCTCTCCCATCTCCGCTCCTTCCTCTTCCCACG
CTCCCCACGCGCCTCCCACAGCCGCCTCGACCTCAACCCAGTCCTCTCCTACCGCCACCCCCACGACGGGGCCTCCTCCGCCTCCGATTGCGTCGTCTGCCTCTCCCCGC
TCTCCGCCGGCGACCGCGTCTCCCGCCTCCCCTGCCGCCACGTCTTCCACACCCACTGCTTCCACGCCTGCCTCCGTCATCTCAACTTCAACTGCCCTCTCTGCCGCTCT
CCCATC
mRNA sequenceShow/hide mRNA sequence
ATGGGTTTACAGAGCCAACTCAACGACTTCTCCTCCGATTCCCTTCCCCTCTTCTTCCTCTCCCTCATCGCCTCTTCCCTCTCCCATCTCCGCTCCTTCCTCTTCCCACG
CTCCCCACGCGCCTCCCACAGCCGCCTCGACCTCAACCCAGTCCTCTCCTACCGCCACCCCCACGACGGGGCCTCCTCCGCCTCCGATTGCGTCGTCTGCCTCTCCCCGC
TCTCCGCCGGCGACCGCGTCTCCCGCCTCCCCTGCCGCCACGTCTTCCACACCCACTGCTTCCACGCCTGCCTCCGTCATCTCAACTTCAACTGCCCTCTCTGCCGCTCT
CCCATC
Protein sequenceShow/hide protein sequence
MGLQSQLNDFSSDSLPLFFLSLIASSLSHLRSFLFPRSPRASHSRLDLNPVLSYRHPHDGASSASDCVVCLSPLSAGDRVSRLPCRHVFHTHCFHACLRHLNFNCPLCRS
PI