; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS000812 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS000812
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionleucine-rich repeat extensin-like protein 3
Genome locationscaffold902:318867..319307
RNA-Seq ExpressionMS000812
SyntenyMS000812
Gene Ontology termsGO:0016020 - membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6601837.1 hypothetical protein SDJN03_07070, partial [Cucurbita argyrosperma subsp. sororia]1.1e-3771.62Show/hide
Query:  MLPLKSLLFLNLLLLISPSATAAASAAARFLDEAPAVPSTTGDPTVKCAPCDQNPPSPPPPPIYPSPPPPSPPPPDVLPYYS-PPPPKKPKNNDNCPPPP
        MLP  SLLFL LLLLISPS   ++SAA R LD+ PA      DPTVKC+PC+QNPPSPPPPP+YPSPPPPSPPPPDV+ YYS PPPPKK   ND+CPPPP
Subjt:  MLPLKSLLFLNLLLLISPSATAAASAAARFLDEAPAVPSTTGDPTVKCAPCDQNPPSPPPPPIYPSPPPPSPPPPDVLPYYS-PPPPKKPKNNDNCPPPP

Query:  YPPSFTYITGPPGDLYPIDQDYNAAARTLTSAAAAAVVGLGLVGLFVV
          P+F YITGPPGDLYPIDQ YNAAAR L SAAA+AVVGL +VG+ ++
Subjt:  YPPSFTYITGPPGDLYPIDQDYNAAARTLTSAAAAAVVGLGLVGLFVV

KAG7032543.1 hypothetical protein SDJN02_06592, partial [Cucurbita argyrosperma subsp. argyrosperma]7.1e-3770.27Show/hide
Query:  MLPLKSLLFLNLLLLISPSATAAASAAARFLDEAPAVPSTTGDPTVKCAPCDQNPPSPPPPPIYPSPPPPSPPPPDVLPYYS-PPPPKKPKNNDNCPPPP
        MLP  SLLFL LLLLISPS   ++SAA R LD+ PA      DPTVKC+PC+QNPPSPPPPP+YPSPPPPSPPPPDV+ YYS PPPPKK   ND+CPPPP
Subjt:  MLPLKSLLFLNLLLLISPSATAAASAAARFLDEAPAVPSTTGDPTVKCAPCDQNPPSPPPPPIYPSPPPPSPPPPDVLPYYS-PPPPKKPKNNDNCPPPP

Query:  YPPSFTYITGPPGDLYPIDQDYNAAARTLTSAAAAAVVGLGLVGLFVV
          P+F YITGPPGDLYPIDQ YNAA+R L SAAA+AVVGL + G+ ++
Subjt:  YPPSFTYITGPPGDLYPIDQDYNAAARTLTSAAAAAVVGLGLVGLFVV

XP_022152315.1 acrosin [Momordica charantia]6.6e-67100Show/hide
Query:  MLPLKSLLFLNLLLLISPSATAAASAAARFLDEAPAVPSTTGDPTVKCAPCDQNPPSPPPPPIYPSPPPPSPPPPDVLPYYSPPPPKKPKNNDNCPPPPY
        MLPLKSLLFLNLLLLISPSATAAASAAARFLDEAPAVPSTTGDPTVKCAPCDQNPPSPPPPPIYPSPPPPSPPPPDVLPYYSPPPPKKPKNNDNCPPPPY
Subjt:  MLPLKSLLFLNLLLLISPSATAAASAAARFLDEAPAVPSTTGDPTVKCAPCDQNPPSPPPPPIYPSPPPPSPPPPDVLPYYSPPPPKKPKNNDNCPPPPY

Query:  PPSFTYITGPPGDLYPIDQDYNAAARTLTSAAAAAVVGLGLVGLFVV
        PPSFTYITGPPGDLYPIDQDYNAAARTLTSAAAAAVVGLGLVGLFVV
Subjt:  PPSFTYITGPPGDLYPIDQDYNAAARTLTSAAAAAVVGLGLVGLFVV

XP_022953268.1 extensin [Cucurbita moschata]2.1e-3669.59Show/hide
Query:  MLPLKSLLFLNLLLLISPSATAAASAAARFLDEAPAVPSTTGDPTVKCAPCDQNPPSPPPPPIYPSPPPPSPPPPDVLPYYS-PPPPKKPKNNDNCPPPP
        MLP  SLLFL LLLLISPS   ++SAA R LD+ PA      DPTVKC+PC+QNPPSPPPPP+YPSPPPPSPPPPDV+ YYS PPPPKK   ND+CPPPP
Subjt:  MLPLKSLLFLNLLLLISPSATAAASAAARFLDEAPAVPSTTGDPTVKCAPCDQNPPSPPPPPIYPSPPPPSPPPPDVLPYYS-PPPPKKPKNNDNCPPPP

Query:  YPPSFTYITGPPGDLYPIDQDYNAAARTLTSAAAAAVVGLGLVGLFVV
          P+F YITGPPGDLYPIDQ YNAA+R L S AA+AVVGL + G+ ++
Subjt:  YPPSFTYITGPPGDLYPIDQDYNAAARTLTSAAAAAVVGLGLVGLFVV

XP_022989990.1 leucine-rich repeat extensin-like protein 3 [Cucurbita maxima]2.0e-3970.75Show/hide
Query:  MLPLKSLLFLNLLLLISPSATAAASAAARFLDEAPAVPSTTGDPTVKCAPCDQNPPSPPPPPIYPSPPPPSPPPPDVLPYYSPPPPKKPKNNDNCPPPPY
        MLP  SLLFL LLLLISPS   ++SAA R LD+ P V +T  DPTVKC+PC+QNPPSPPPPP+YPSPPPPSPPPPDV+ YYSPPPPKK   N++CPPPP 
Subjt:  MLPLKSLLFLNLLLLISPSATAAASAAARFLDEAPAVPSTTGDPTVKCAPCDQNPPSPPPPPIYPSPPPPSPPPPDVLPYYSPPPPKKPKNNDNCPPPPY

Query:  PPSFTYITGPPGDLYPIDQDYNAAARTLTSAAAAAVVGLGLVGLFVV
         P+F YITGPPGDLYPIDQ+YNAAAR L SAAA+AV+GL + G+ ++
Subjt:  PPSFTYITGPPGDLYPIDQDYNAAARTLTSAAAAAVVGLGLVGLFVV

TrEMBL top hitse value%identityAlignment
A0A0A0KPJ1 Uncharacterized protein6.7e-3368.24Show/hide
Query:  MLPLKSLLFLNLLLLISPSATAAASAAARFLDEAPAVPSTTGDPTVKCAPCDQNPPSPPPPPIYPSPPPPSPPPPDVLPYYSPPPPKKPK-NNDNCPPPP
        MLPLK LLFLN LLLISPS +A  S   R LD+     +T  DP VKCAPC+QNPPSPPPP +YPSPPPPSPPPPDV+PYYSPPPPKK +  + NCPPPP
Subjt:  MLPLKSLLFLNLLLLISPSATAAASAAARFLDEAPAVPSTTGDPTVKCAPCDQNPPSPPPPPIYPSPPPPSPPPPDVLPYYSPPPPKKPK-NNDNCPPPP

Query:  YPPSFTYITGPPGDLYPIDQDYNAAARTLTSAAAAAVVGLGLVGLFVV
          PSF YITGPPGDLYPIDQ YNAA R     +AA VVG+ L GL +V
Subjt:  YPPSFTYITGPPGDLYPIDQDYNAAARTLTSAAAAAVVGLGLVGLFVV

A0A1S3CT22 extensin-like1.2e-3470.27Show/hide
Query:  MLPLKSLLFLNLLLLISPSATAAASAAARFLDEAPAVPSTTGDPTVKCAPCDQNPPSPPPPPIYPSPPPPSPPPPDVLPYYSPPPPKKPK-NNDNCPPPP
        MLPLK LLFLN LLLISPS +A  SA  R LD+     +T  DP VKCAPC+QNPPSPPPP +YPSPPPPSPPPPDV+PYYSPPPPKK +  N NCPPPP
Subjt:  MLPLKSLLFLNLLLLISPSATAAASAAARFLDEAPAVPSTTGDPTVKCAPCDQNPPSPPPPPIYPSPPPPSPPPPDVLPYYSPPPPKKPK-NNDNCPPPP

Query:  YPPSFTYITGPPGDLYPIDQDYNAAARTLTSAAAAAVVGLGLVGLFVV
          PSF YITGPPGDLYPIDQ+YNAA R    +AAAA VG+ L GL +V
Subjt:  YPPSFTYITGPPGDLYPIDQDYNAAARTLTSAAAAAVVGLGLVGLFVV

A0A6J1DDL2 acrosin3.2e-67100Show/hide
Query:  MLPLKSLLFLNLLLLISPSATAAASAAARFLDEAPAVPSTTGDPTVKCAPCDQNPPSPPPPPIYPSPPPPSPPPPDVLPYYSPPPPKKPKNNDNCPPPPY
        MLPLKSLLFLNLLLLISPSATAAASAAARFLDEAPAVPSTTGDPTVKCAPCDQNPPSPPPPPIYPSPPPPSPPPPDVLPYYSPPPPKKPKNNDNCPPPPY
Subjt:  MLPLKSLLFLNLLLLISPSATAAASAAARFLDEAPAVPSTTGDPTVKCAPCDQNPPSPPPPPIYPSPPPPSPPPPDVLPYYSPPPPKKPKNNDNCPPPPY

Query:  PPSFTYITGPPGDLYPIDQDYNAAARTLTSAAAAAVVGLGLVGLFVV
        PPSFTYITGPPGDLYPIDQDYNAAARTLTSAAAAAVVGLGLVGLFVV
Subjt:  PPSFTYITGPPGDLYPIDQDYNAAARTLTSAAAAAVVGLGLVGLFVV

A0A6J1GMY1 extensin1.0e-3669.59Show/hide
Query:  MLPLKSLLFLNLLLLISPSATAAASAAARFLDEAPAVPSTTGDPTVKCAPCDQNPPSPPPPPIYPSPPPPSPPPPDVLPYYS-PPPPKKPKNNDNCPPPP
        MLP  SLLFL LLLLISPS   ++SAA R LD+ PA      DPTVKC+PC+QNPPSPPPPP+YPSPPPPSPPPPDV+ YYS PPPPKK   ND+CPPPP
Subjt:  MLPLKSLLFLNLLLLISPSATAAASAAARFLDEAPAVPSTTGDPTVKCAPCDQNPPSPPPPPIYPSPPPPSPPPPDVLPYYS-PPPPKKPKNNDNCPPPP

Query:  YPPSFTYITGPPGDLYPIDQDYNAAARTLTSAAAAAVVGLGLVGLFVV
          P+F YITGPPGDLYPIDQ YNAA+R L S AA+AVVGL + G+ ++
Subjt:  YPPSFTYITGPPGDLYPIDQDYNAAARTLTSAAAAAVVGLGLVGLFVV

A0A6J1JNW0 leucine-rich repeat extensin-like protein 39.6e-4070.75Show/hide
Query:  MLPLKSLLFLNLLLLISPSATAAASAAARFLDEAPAVPSTTGDPTVKCAPCDQNPPSPPPPPIYPSPPPPSPPPPDVLPYYSPPPPKKPKNNDNCPPPPY
        MLP  SLLFL LLLLISPS   ++SAA R LD+ P V +T  DPTVKC+PC+QNPPSPPPPP+YPSPPPPSPPPPDV+ YYSPPPPKK   N++CPPPP 
Subjt:  MLPLKSLLFLNLLLLISPSATAAASAAARFLDEAPAVPSTTGDPTVKCAPCDQNPPSPPPPPIYPSPPPPSPPPPDVLPYYSPPPPKKPKNNDNCPPPPY

Query:  PPSFTYITGPPGDLYPIDQDYNAAARTLTSAAAAAVVGLGLVGLFVV
         P+F YITGPPGDLYPIDQ+YNAAAR L SAAA+AV+GL + G+ ++
Subjt:  PPSFTYITGPPGDLYPIDQDYNAAARTLTSAAAAAVVGLGLVGLFVV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G02405.1 proline-rich family protein2.4e-0651.69Show/hide
Query:  TTGDPTVKCAPCDQN----PPSPPPPPIYPSPPPPSPPPPDVLPYYSPPPPKKPKNNDNCPPPPYPPSFTYITGPPGDLYPIDQDYNAA
        ++ +  V C PC QN    PPSPPPP   PSPPPPSPPPP       PP P  P      PPPP PP++ + T PPGDLYPI+  Y AA
Subjt:  TTGDPTVKCAPCDQN----PPSPPPPPIYPSPPPPSPPPPDVLPYYSPPPPKKPKNNDNCPPPPYPPSFTYITGPPGDLYPIDQDYNAA

AT1G23040.1 hydroxyproline-rich glycoprotein family protein6.4e-1246.67Show/hide
Query:  LISPSATAAASAAARFLDEAPAVPSTTGDPTVKCAP-CDQNPPSPPPPPIYPSPPPPSPPPPDVLPYYSPPPPKKPKNNDNCPPPPYPPSFTYITGPPGD
        LI+ S+++ AS  AR LDE         DP +KC+P C QNPP P PPP  PSPPPP+ PPP  LP   PPPPKK   +  CPPPP P +F YITGPPG+
Subjt:  LISPSATAAASAAARFLDEAPAVPSTTGDPTVKCAP-CDQNPPSPPPPPIYPSPPPPSPPPPDVLPYYSPPPPKKPKNNDNCPPPPYPPSFTYITGPPGD

Query:  LYPIDQDYNAAA-RTLTSAAAAAVVGLGLVGLFVV
        LYP+D+ + AAA ++      + ++  G++   ++
Subjt:  LYPIDQDYNAAA-RTLTSAAAAAVVGLGLVGLFVV

AT1G70990.1 proline-rich family protein4.8e-0740.54Show/hide
Query:  LKSLLFLNLLLLISPSATAAASAAARFLDEAPAVPSTTGDPTVKCAPCDQNPPSPPPPPIYPSPPPPS---PPPPDVLPYYSPPPPKKPKNNDNCPPPPY
        L +++FL   ++I+    A+ S+  R L+E P          +KC PC QN P P PPP  PSPPPPS   PPPP  LP   P PPKK      CPPP  
Subjt:  LKSLLFLNLLLLISPSATAAASAAARFLDEAPAVPSTTGDPTVKCAPCDQNPPSPPPPPIYPSPPPPS---PPPPDVLPYYSPPPPKKPKNNDNCPPPPY

Query:  PPSFTYITGPPGDLYPIDQDYNAA-ARTLTSAAAAAVVGLGLVGLFVV
        P ++ Y+TGPPG+LYPIDQ + AA  ++ T    + ++  G++   ++
Subjt:  PPSFTYITGPPGDLYPIDQDYNAA-ARTLTSAAAAAVVGLGLVGLFVV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTTCCTCTCAAATCTCTCCTCTTTCTCAATCTCCTCCTCCTTATTTCCCCCTCCGCCACCGCCGCCGCCTCTGCCGCCGCCAGGTTCCTCGACGAGGCCCCCGCCGT
CCCTTCCACCACCGGCGACCCAACCGTCAAGTGCGCCCCATGCGATCAGAACCCCCCATCTCCCCCGCCGCCGCCGATCTACCCCTCTCCTCCCCCGCCGTCGCCTCCGC
CGCCGGACGTTCTGCCCTACTACTCTCCGCCGCCACCTAAGAAGCCCAAGAACAACGACAACTGCCCCCCGCCGCCGTATCCTCCGTCCTTCACCTACATAACCGGCCCC
CCCGGCGACTTGTACCCAATCGACCAGGATTATAACGCCGCCGCCCGGACACTCACCTCCGCTGCCGCCGCCGCCGTGGTTGGGCTCGGTTTGGTTGGGCTTTTTGTGGT
T
mRNA sequenceShow/hide mRNA sequence
ATGCTTCCTCTCAAATCTCTCCTCTTTCTCAATCTCCTCCTCCTTATTTCCCCCTCCGCCACCGCCGCCGCCTCTGCCGCCGCCAGGTTCCTCGACGAGGCCCCCGCCGT
CCCTTCCACCACCGGCGACCCAACCGTCAAGTGCGCCCCATGCGATCAGAACCCCCCATCTCCCCCGCCGCCGCCGATCTACCCCTCTCCTCCCCCGCCGTCGCCTCCGC
CGCCGGACGTTCTGCCCTACTACTCTCCGCCGCCACCTAAGAAGCCCAAGAACAACGACAACTGCCCCCCGCCGCCGTATCCTCCGTCCTTCACCTACATAACCGGCCCC
CCCGGCGACTTGTACCCAATCGACCAGGATTATAACGCCGCCGCCCGGACACTCACCTCCGCTGCCGCCGCCGCCGTGGTTGGGCTCGGTTTGGTTGGGCTTTTTGTGGT
T
Protein sequenceShow/hide protein sequence
MLPLKSLLFLNLLLLISPSATAAASAAARFLDEAPAVPSTTGDPTVKCAPCDQNPPSPPPPPIYPSPPPPSPPPPDVLPYYSPPPPKKPKNNDNCPPPPYPPSFTYITGP
PGDLYPIDQDYNAAARTLTSAAAAAVVGLGLVGLFVV