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MS000813 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS000813
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionRNase H domain-containing protein
Genome locationscaffold902:328639..328902
RNA-Seq ExpressionMS000813
SyntenyMS000813
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
PKA46019.1 hypothetical protein AXF42_Ash021324 [Apostasia shenzhenica]1.6e-0438.1Show/hide
Query:  AEIQVILEGLRFAQSLGFRSILVHSDSLCTVNLIHKRSLSLGLEGI--WIHAIKMLTYVLRDFTVEHVPREFSRPIDCLSKHGL
        AE + ++ GL+FA S+  + I V SDSL  VN ++ R+     E +  ++H  K L  +  DF++ HVPRE ++  D L+K GL
Subjt:  AEIQVILEGLRFAQSLGFRSILVHSDSLCTVNLIHKRSLSLGLEGI--WIHAIKMLTYVLRDFTVEHVPREFSRPIDCLSKHGL

PKA57260.1 hypothetical protein AXF42_Ash002564 [Apostasia shenzhenica]4.7e-0437.35Show/hide
Query:  AEIQVILEGLRFAQSLGFRSILVHSDSLCTVNLIHKR-SLSLGLEGIWIHAIKMLTYVLRDFTVEHVPREFSRPIDCLSKHGL
        AE + ++ GL FA S+  + I V SDSL  VN I++       +   ++H  K L  + +DF++ HVPRE ++  D L+K GL
Subjt:  AEIQVILEGLRFAQSLGFRSILVHSDSLCTVNLIHKR-SLSLGLEGIWIHAIKMLTYVLRDFTVEHVPREFSRPIDCLSKHGL

XP_022158377.1 uncharacterized protein LOC111024874 [Momordica charantia]1.1e-0539.53Show/hide
Query:  SPLLAEIQVILEGLRFAQSLGFRSILVHSDSLCTVNLIHKRSLSLGLEGIWIHAIKMLTYVLRDFTVEHVPREFSRPIDCLSKHGL
        SPLLAEI+ ILEGL+FA +  F  + V SDSL  + LI     + G E  W+  I+ LT      +  H  R+ +R    L+K G+
Subjt:  SPLLAEIQVILEGLRFAQSLGFRSILVHSDSLCTVNLIHKRSLSLGLEGIWIHAIKMLTYVLRDFTVEHVPREFSRPIDCLSKHGL

XP_035542945.1 uncharacterized protein LOC118346040 [Juglans regia]1.2e-0437.65Show/hide
Query:  PLLAEIQVILEGLRFAQSLGFRSILVHSDSLCTVNLIHKRSLSLGLEGIWIHAIKMLTYVLRDFTVEHVPREFSRPIDCLSKHGL
        PLL E    L  ++F   LG R+I++  DSL  VN I+ +  S  L G+ I  IK L   +  + V+HVPR+ +    CL+K  L
Subjt:  PLLAEIQVILEGLRFAQSLGFRSILVHSDSLCTVNLIHKRSLSLGLEGIWIHAIKMLTYVLRDFTVEHVPREFSRPIDCLSKHGL

XP_042973084.1 uncharacterized protein LOC122304886 [Carya illinoinensis]2.5e-0539.02Show/hide
Query:  AEIQVILEGLRFAQSLGFRSILVHSDSLCTVNLIHKRSLSLG-LEGIWIHAIKMLTYVLRDFTVEHVPREFSRPIDCLSKHG
        AE++ +L GL++ Q+LG   + + SDSL  V+ I K+   +  LE  W  A+++  Y   DFT+ HV RE + P D L+K G
Subjt:  AEIQVILEGLRFAQSLGFRSILVHSDSLCTVNLIHKRSLSLG-LEGIWIHAIKMLTYVLRDFTVEHVPREFSRPIDCLSKHG

TrEMBL top hitse value%identityAlignment
A0A2H9ZRU9 RNase H domain-containing protein7.9e-0538.1Show/hide
Query:  AEIQVILEGLRFAQSLGFRSILVHSDSLCTVNLIHKRSLSLGLEGI--WIHAIKMLTYVLRDFTVEHVPREFSRPIDCLSKHGL
        AE + ++ GL+FA S+  + I V SDSL  VN ++ R+     E +  ++H  K L  +  DF++ HVPRE ++  D L+K GL
Subjt:  AEIQVILEGLRFAQSLGFRSILVHSDSLCTVNLIHKRSLSLGLEGI--WIHAIKMLTYVLRDFTVEHVPREFSRPIDCLSKHGL

A0A2I0ANX5 Ribonuclease H2.3e-0437.35Show/hide
Query:  AEIQVILEGLRFAQSLGFRSILVHSDSLCTVNLIHKR-SLSLGLEGIWIHAIKMLTYVLRDFTVEHVPREFSRPIDCLSKHGL
        AE + ++ GL FA S+  + I V SDSL  VN I++       +   ++H  K L  + +DF++ HVPRE ++  D L+K GL
Subjt:  AEIQVILEGLRFAQSLGFRSILVHSDSLCTVNLIHKR-SLSLGLEGIWIHAIKMLTYVLRDFTVEHVPREFSRPIDCLSKHGL

A0A2I0AUZ1 RNase H domain-containing protein2.3e-0436.14Show/hide
Query:  AEIQVILEGLRFAQSLGFRSILVHSDSLCTVNLIHKR-SLSLGLEGIWIHAIKMLTYVLRDFTVEHVPREFSRPIDCLSKHGL
        AE + ++ GL+FA S+  + I V SDSL  VN +++       +   ++H  K L  +  DF++ HVPRE ++  D L+K GL
Subjt:  AEIQVILEGLRFAQSLGFRSILVHSDSLCTVNLIHKR-SLSLGLEGIWIHAIKMLTYVLRDFTVEHVPREFSRPIDCLSKHGL

A0A6J1DX30 uncharacterized protein LOC1110248745.4e-0639.53Show/hide
Query:  SPLLAEIQVILEGLRFAQSLGFRSILVHSDSLCTVNLIHKRSLSLGLEGIWIHAIKMLTYVLRDFTVEHVPREFSRPIDCLSKHGL
        SPLLAEI+ ILEGL+FA +  F  + V SDSL  + LI     + G E  W+  I+ LT      +  H  R+ +R    L+K G+
Subjt:  SPLLAEIQVILEGLRFAQSLGFRSILVHSDSLCTVNLIHKRSLSLGLEGIWIHAIKMLTYVLRDFTVEHVPREFSRPIDCLSKHGL

A0A6P9E4E5 uncharacterized protein LOC1183460406.0e-0537.65Show/hide
Query:  PLLAEIQVILEGLRFAQSLGFRSILVHSDSLCTVNLIHKRSLSLGLEGIWIHAIKMLTYVLRDFTVEHVPREFSRPIDCLSKHGL
        PLL E    L  ++F   LG R+I++  DSL  VN I+ +  S  L G+ I  IK L   +  + V+HVPR+ +    CL+K  L
Subjt:  PLLAEIQVILEGLRFAQSLGFRSILVHSDSLCTVNLIHKRSLSLGLEGIWIHAIKMLTYVLRDFTVEHVPREFSRPIDCLSKHGL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ACTCCATCTCCTCTTCTAGCTGAAATTCAAGTCATCCTTGAGGGCCTTCGTTTTGCTCAGTCACTGGGTTTTCGAAGTATTCTGGTCCACTCCGATTCTCTTTGCACTGT
TAACCTCATTCACAAGCGATCTCTCTCCCTAGGTCTAGAGGGTATTTGGATACATGCCATAAAAATGCTTACTTATGTTCTCAGAGATTTCACCGTCGAGCATGTCCCTC
GGGAGTTTAGTCGACCAATAGATTGCTTATCAAAGCATGGTCTC
mRNA sequenceShow/hide mRNA sequence
ACTCCATCTCCTCTTCTAGCTGAAATTCAAGTCATCCTTGAGGGCCTTCGTTTTGCTCAGTCACTGGGTTTTCGAAGTATTCTGGTCCACTCCGATTCTCTTTGCACTGT
TAACCTCATTCACAAGCGATCTCTCTCCCTAGGTCTAGAGGGTATTTGGATACATGCCATAAAAATGCTTACTTATGTTCTCAGAGATTTCACCGTCGAGCATGTCCCTC
GGGAGTTTAGTCGACCAATAGATTGCTTATCAAAGCATGGTCTC
Protein sequenceShow/hide protein sequence
TPSPLLAEIQVILEGLRFAQSLGFRSILVHSDSLCTVNLIHKRSLSLGLEGIWIHAIKMLTYVLRDFTVEHVPREFSRPIDCLSKHGL