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MS000820 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS000820
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionRNase H domain-containing protein
Genome locationscaffold236:94140..94547
RNA-Seq ExpressionMS000820
SyntenyMS000820
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022143535.1 uncharacterized protein LOC111013412 [Momordica charantia]7.0e-3147.79Show/hide
Query:  WRPPSSNHWRLNTDAAWHAENGTEGLGWVYRDERGKVIRAGCTPIFRDYGVTYLELMAICDGLDALVNKGTEPIHLETDSMKDVQFLQGKMDVFTEISWL
        W+PP+SN W+LNT+AAW A+  T G+GW+ RDE+G+VI+A C  I  +  +TYLE+MAIC+GL A+  +   PIHLE+DS++ +  L  +    TEI WL
Subjt:  WRPPSSNHWRLNTDAAWHAENGTEGLGWVYRDERGKVIRAGCTPIFRDYGVTYLELMAICDGLDALVNKGTEPIHLETDSMKDVQFLQGKMDVFTEISWL

Query:  LEDIRNYEGGRRIGSIQHVKRTSNSVAHEIARFSME
        LE+I        I S++H+ R +N VAH +AR +ME
Subjt:  LEDIRNYEGGRRIGSIQHVKRTSNSVAHEIARFSME

XP_022148737.1 uncharacterized protein LOC111017329 [Momordica charantia]6.4e-2444.8Show/hide
Query:  NHWRLNTDAAWHAENGTEGLGWVYRDERGKVIRAGCTPIFRDYGVTYLELMAICDGLDALVNKGTEPIHLETDSMKDVQFLQGKMDVFTEISWLLEDIRN
        N W+LNTDAAWHA  G  GLGW+ R+E+ ++ +AG   I     +TYLELMAI  G++A+V+  +  + +E++S++ +  +QG     TEI WL++DI+N
Subjt:  NHWRLNTDAAWHAENGTEGLGWVYRDERGKVIRAGCTPIFRDYGVTYLELMAICDGLDALVNKGTEPIHLETDSMKDVQFLQGKMDVFTEISWLLEDIRN

Query:  YEGGRRIGSIQHVKRTSNSVAHEIA
        +    R+   QHV+R  NSVA EIA
Subjt:  YEGGRRIGSIQHVKRTSNSVAHEIA

XP_022154990.1 uncharacterized protein LOC111022134 isoform X1 [Momordica charantia]4.6e-2252.87Show/hide
Query:  WRPPSSNHWRLNTDAAWHAENGTEGLGWVYRDERGKVIRAGCTPIFRDYGVTYLELMAICDGLDALVNKGTEPIHLETDSMKDVQFL
        W+PP+SN W+LNTDAAW A+  T+G+GW+ RDE+G+VI+ GC  I  +  +TYLE+MAIC+GL A+  +   PIHLE+DS++ +  L
Subjt:  WRPPSSNHWRLNTDAAWHAENGTEGLGWVYRDERGKVIRAGCTPIFRDYGVTYLELMAICDGLDALVNKGTEPIHLETDSMKDVQFL

XP_022154991.1 uncharacterized protein LOC111022134 isoform X2 [Momordica charantia]4.6e-2252.87Show/hide
Query:  WRPPSSNHWRLNTDAAWHAENGTEGLGWVYRDERGKVIRAGCTPIFRDYGVTYLELMAICDGLDALVNKGTEPIHLETDSMKDVQFL
        W+PP+SN W+LNTDAAW A+  T+G+GW+ RDE+G+VI+ GC  I  +  +TYLE+MAIC+GL A+  +   PIHLE+DS++ +  L
Subjt:  WRPPSSNHWRLNTDAAWHAENGTEGLGWVYRDERGKVIRAGCTPIFRDYGVTYLELMAICDGLDALVNKGTEPIHLETDSMKDVQFL

XP_022156777.1 uncharacterized protein LOC111023608 [Momordica charantia]5.9e-3045.83Show/hide
Query:  WRPPSSNHWRLNTDAAWHAENGTEGLGWVYRDERGKVIRAGCTPIFRDYGVTYLELMAICDGLDA--------LVNKGTEPIHLETDSMKDVQFLQGKMD
        W+PP+SN W+LNTDAAW A+  T G+GW+ RDE+G+VI+A C  I  +  +TYLE+MAIC+GL A        +  +   PIHLE+DS++ +  L  +  
Subjt:  WRPPSSNHWRLNTDAAWHAENGTEGLGWVYRDERGKVIRAGCTPIFRDYGVTYLELMAICDGLDA--------LVNKGTEPIHLETDSMKDVQFLQGKMD

Query:  VFTEISWLLEDIRNYEGGRRIGSIQHVKRTSNSVAHEIARFSME
          TEI WLLE+I       +I S++H+ R +N VAH++AR +ME
Subjt:  VFTEISWLLEDIRNYEGGRRIGSIQHVKRTSNSVAHEIARFSME

TrEMBL top hitse value%identityAlignment
A0A6J1CP26 uncharacterized protein LOC1110134123.4e-3147.79Show/hide
Query:  WRPPSSNHWRLNTDAAWHAENGTEGLGWVYRDERGKVIRAGCTPIFRDYGVTYLELMAICDGLDALVNKGTEPIHLETDSMKDVQFLQGKMDVFTEISWL
        W+PP+SN W+LNT+AAW A+  T G+GW+ RDE+G+VI+A C  I  +  +TYLE+MAIC+GL A+  +   PIHLE+DS++ +  L  +    TEI WL
Subjt:  WRPPSSNHWRLNTDAAWHAENGTEGLGWVYRDERGKVIRAGCTPIFRDYGVTYLELMAICDGLDALVNKGTEPIHLETDSMKDVQFLQGKMDVFTEISWL

Query:  LEDIRNYEGGRRIGSIQHVKRTSNSVAHEIARFSME
        LE+I        I S++H+ R +N VAH +AR +ME
Subjt:  LEDIRNYEGGRRIGSIQHVKRTSNSVAHEIARFSME

A0A6J1D5W1 uncharacterized protein LOC1110173293.1e-2444.8Show/hide
Query:  NHWRLNTDAAWHAENGTEGLGWVYRDERGKVIRAGCTPIFRDYGVTYLELMAICDGLDALVNKGTEPIHLETDSMKDVQFLQGKMDVFTEISWLLEDIRN
        N W+LNTDAAWHA  G  GLGW+ R+E+ ++ +AG   I     +TYLELMAI  G++A+V+  +  + +E++S++ +  +QG     TEI WL++DI+N
Subjt:  NHWRLNTDAAWHAENGTEGLGWVYRDERGKVIRAGCTPIFRDYGVTYLELMAICDGLDALVNKGTEPIHLETDSMKDVQFLQGKMDVFTEISWLLEDIRN

Query:  YEGGRRIGSIQHVKRTSNSVAHEIA
        +    R+   QHV+R  NSVA EIA
Subjt:  YEGGRRIGSIQHVKRTSNSVAHEIA

A0A6J1DL64 uncharacterized protein LOC111022134 isoform X12.2e-2252.87Show/hide
Query:  WRPPSSNHWRLNTDAAWHAENGTEGLGWVYRDERGKVIRAGCTPIFRDYGVTYLELMAICDGLDALVNKGTEPIHLETDSMKDVQFL
        W+PP+SN W+LNTDAAW A+  T+G+GW+ RDE+G+VI+ GC  I  +  +TYLE+MAIC+GL A+  +   PIHLE+DS++ +  L
Subjt:  WRPPSSNHWRLNTDAAWHAENGTEGLGWVYRDERGKVIRAGCTPIFRDYGVTYLELMAICDGLDALVNKGTEPIHLETDSMKDVQFL

A0A6J1DQC9 uncharacterized protein LOC111022134 isoform X22.2e-2252.87Show/hide
Query:  WRPPSSNHWRLNTDAAWHAENGTEGLGWVYRDERGKVIRAGCTPIFRDYGVTYLELMAICDGLDALVNKGTEPIHLETDSMKDVQFL
        W+PP+SN W+LNTDAAW A+  T+G+GW+ RDE+G+VI+ GC  I  +  +TYLE+MAIC+GL A+  +   PIHLE+DS++ +  L
Subjt:  WRPPSSNHWRLNTDAAWHAENGTEGLGWVYRDERGKVIRAGCTPIFRDYGVTYLELMAICDGLDALVNKGTEPIHLETDSMKDVQFL

A0A6J1DSV1 uncharacterized protein LOC1110236082.9e-3045.83Show/hide
Query:  WRPPSSNHWRLNTDAAWHAENGTEGLGWVYRDERGKVIRAGCTPIFRDYGVTYLELMAICDGLDA--------LVNKGTEPIHLETDSMKDVQFLQGKMD
        W+PP+SN W+LNTDAAW A+  T G+GW+ RDE+G+VI+A C  I  +  +TYLE+MAIC+GL A        +  +   PIHLE+DS++ +  L  +  
Subjt:  WRPPSSNHWRLNTDAAWHAENGTEGLGWVYRDERGKVIRAGCTPIFRDYGVTYLELMAICDGLDA--------LVNKGTEPIHLETDSMKDVQFLQGKMD

Query:  VFTEISWLLEDIRNYEGGRRIGSIQHVKRTSNSVAHEIARFSME
          TEI WLLE+I       +I S++H+ R +N VAH++AR +ME
Subjt:  VFTEISWLLEDIRNYEGGRRIGSIQHVKRTSNSVAHEIARFSME

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G34320.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein8.0e-0929.63Show/hide
Query:  WRPPSSNHWRLNTDAAWHAENGTEGLGWVYRDERGKVIRAGCTPIFRDYGVTYLELMAICDGLDALVNKGTEPIHLETDSMKDVQFLQGKMDVFTEISWL
        W+ P     + NTDA W  EN   G+GW+ R+E G V+  G   + R   V   EL A+   +  +     + I  E+D+   V  L    D +  +   
Subjt:  WRPPSSNHWRLNTDAAWHAENGTEGLGWVYRDERGKVIRAGCTPIFRDYGVTYLELMAICDGLDALVNKGTEPIHLETDSMKDVQFLQGKMDVFTEISWL

Query:  LEDIRNYEGGRRIGSIQHVKRTSNSVAHEIARFSM
        LEDI+           +   R  N VA  IAR S+
Subjt:  LEDIRNYEGGRRIGSIQHVKRTSNSVAHEIARFSM

AT4G29090.1 Ribonuclease H-like superfamily protein8.0e-0925.93Show/hide
Query:  WRPPSSNHWRLNTDAAWHAENGTEGLGWVYRDERGKVIRAGCTPIFRDYGVTYLELMAICDGLDALVNKGTEPIHLETDSMKDVQFLQGKMDVFTEISWL
        WRPP     + NTDA W+ +N   G+GWV R+E+G+V   G   + +   V   EL A+   + +L       +  E+DS   ++ L    +++  +   
Subjt:  WRPPSSNHWRLNTDAAWHAENGTEGLGWVYRDERGKVIRAGCTPIFRDYGVTYLELMAICDGLDALVNKGTEPIHLETDSMKDVQFLQGKMDVFTEISWL

Query:  LEDIRNYEGGRRIGSIQHVKRTSNSVAHEIARFSM
        ++D++             + R  N++A  +AR S+
Subjt:  LEDIRNYEGGRRIGSIQHVKRTSNSVAHEIARFSM

AT5G61090.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein3.5e-0426.47Show/hide
Query:  WRPPSSNHWRLNTDAAWHAENGTEGLGWVYRDERGKVIRAGCTPIFRDYGVTYLELMAICDGLDALVNKGTEPIHLETDSMKDVQFLQGKMDVFTEISWL
        W PP     +LN     +  +       + RD+ GK +  G     +        L+AI  GL  L + G   IHLET S + +  L  K  +F +   L
Subjt:  WRPPSSNHWRLNTDAAWHAENGTEGLGWVYRDERGKVIRAGCTPIFRDYGVTYLELMAICDGLDALVNKGTEPIHLETDSMKDVQFLQGKMDVFTEISWL

Query:  LEDIRNYEGGRRIGSIQHVKRTSNSVAHEIARFSME
        L   ++         I H+ +  NS A  +A+ S E
Subjt:  LEDIRNYEGGRRIGSIQHVKRTSNSVAHEIARFSME


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TGGAGACCTCCCTCAAGTAACCATTGGAGGCTTAATACTGATGCGGCATGGCATGCAGAAAATGGAACAGAAGGGCTCGGGTGGGTCTATCGAGATGAAAGAGGGAAAGT
GATTAGGGCTGGGTGCACACCAATTTTCAGAGACTATGGAGTTACTTACTTGGAGCTAATGGCAATCTGTGATGGGCTAGACGCATTGGTGAACAAAGGCACTGAACCGA
TTCATCTAGAGACGGATTCCATGAAGGATGTTCAATTTCTTCAGGGCAAAATGGATGTCTTCACAGAAATTTCTTGGCTTCTGGAGGATATCAGAAATTATGAAGGAGGA
AGGAGAATTGGATCAATCCAACATGTTAAGAGGACCTCAAATTCGGTAGCTCATGAGATTGCTCGATTTTCGATGGAA
mRNA sequenceShow/hide mRNA sequence
TGGAGACCTCCCTCAAGTAACCATTGGAGGCTTAATACTGATGCGGCATGGCATGCAGAAAATGGAACAGAAGGGCTCGGGTGGGTCTATCGAGATGAAAGAGGGAAAGT
GATTAGGGCTGGGTGCACACCAATTTTCAGAGACTATGGAGTTACTTACTTGGAGCTAATGGCAATCTGTGATGGGCTAGACGCATTGGTGAACAAAGGCACTGAACCGA
TTCATCTAGAGACGGATTCCATGAAGGATGTTCAATTTCTTCAGGGCAAAATGGATGTCTTCACAGAAATTTCTTGGCTTCTGGAGGATATCAGAAATTATGAAGGAGGA
AGGAGAATTGGATCAATCCAACATGTTAAGAGGACCTCAAATTCGGTAGCTCATGAGATTGCTCGATTTTCGATGGAA
Protein sequenceShow/hide protein sequence
WRPPSSNHWRLNTDAAWHAENGTEGLGWVYRDERGKVIRAGCTPIFRDYGVTYLELMAICDGLDALVNKGTEPIHLETDSMKDVQFLQGKMDVFTEISWLLEDIRNYEGG
RRIGSIQHVKRTSNSVAHEIARFSME