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MS000825 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS000825
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionDUF4283 domain-containing protein
Genome locationscaffold236:177312..177470
RNA-Seq ExpressionMS000825
SyntenyMS000825
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
GO:0110165 - cellular anatomical structure (cellular component)
GO:0003824 - catalytic activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0047412.1 putative non-LTR retroelement reverse transcriptase [Cucumis melo var. makuwa]5.7e-0550.94Show/hide
Query:  LELWTSRGLSVIASLVRKPFCLYKATADCSRLSYARVCVQVGAESQFPKVVNV
        +ELWT  GL+V+AS+V KP  L  AT +  RLSYARVCV++  +S  P  + V
Subjt:  LELWTSRGLSVIASLVRKPFCLYKATADCSRLSYARVCVQVGAESQFPKVVNV

KAB5561400.1 hypothetical protein DKX38_006357 [Salix brachista]3.4e-0553.19Show/hide
Query:  LELWTSRGLSVIASLVRKPFCLYKATADCSRLSYARVCVQVGAESQF
        L LWT++GLS++AS+V KP    +AT  CSRL YAR+CV++ AE  +
Subjt:  LELWTSRGLSVIASLVRKPFCLYKATADCSRLSYARVCVQVGAESQF

KAF5203726.1 Rna exonuclease [Thalictrum thalictroides]1.5e-0555.1Show/hide
Query:  LWTSRGLSVIASLVRKPFCLYKATADCSRLSYARVCVQVGAESQFPKVV
        LW+  GL  +ASL+ KP CL  ATA  SRL +ARVC++V  +  FPKVV
Subjt:  LWTSRGLSVIASLVRKPFCLYKATADCSRLSYARVCVQVGAESQFPKVV

KAF5204535.1 Rna exonuclease [Thalictrum thalictroides]3.4e-0552Show/hide
Query:  LWTSRGLSVIASLVRKPFCLYKATADCSRLSYARVCVQVGAESQFPKVVN
        LWT  GLS IAS+V +P C+   TA  SRL++AR+CV+V    ++ KVVN
Subjt:  LWTSRGLSVIASLVRKPFCLYKATADCSRLSYARVCVQVGAESQFPKVVN

XP_022157428.1 uncharacterized protein LOC111024128 [Momordica charantia]1.4e-0660.38Show/hide
Query:  LELWTSRGLSVIASLVRKPFCLYKATADCSRLSYARVCVQVGAESQFPKVVNV
        LELWT RGLSVI S++  P CL KAT D SRLS+AR+ V++ A S FP  V V
Subjt:  LELWTSRGLSVIASLVRKPFCLYKATADCSRLSYARVCVQVGAESQFPKVVNV

TrEMBL top hitse value%identityAlignment
A0A5A7TVB8 Putative non-LTR retroelement reverse transcriptase2.8e-0550.94Show/hide
Query:  LELWTSRGLSVIASLVRKPFCLYKATADCSRLSYARVCVQVGAESQFPKVVNV
        +ELWT  GL+V+AS+V KP  L  AT +  RLSYARVCV++  +S  P  + V
Subjt:  LELWTSRGLSVIASLVRKPFCLYKATADCSRLSYARVCVQVGAESQFPKVVNV

A0A5N5N1I5 DUF4283 domain-containing protein1.6e-0553.19Show/hide
Query:  LELWTSRGLSVIASLVRKPFCLYKATADCSRLSYARVCVQVGAESQF
        L LWT++GLS++AS+V KP    +AT  CSRL YAR+CV++ AE  +
Subjt:  LELWTSRGLSVIASLVRKPFCLYKATADCSRLSYARVCVQVGAESQF

A0A6J1DTC3 uncharacterized protein LOC1110241286.6e-0760.38Show/hide
Query:  LELWTSRGLSVIASLVRKPFCLYKATADCSRLSYARVCVQVGAESQFPKVVNV
        LELWT RGLSVI S++  P CL KAT D SRLS+AR+ V++ A S FP  V V
Subjt:  LELWTSRGLSVIASLVRKPFCLYKATADCSRLSYARVCVQVGAESQFPKVVNV

A0A7J6X1X1 Rna exonuclease7.3e-0655.1Show/hide
Query:  LWTSRGLSVIASLVRKPFCLYKATADCSRLSYARVCVQVGAESQFPKVV
        LW+  GL  +ASL+ KP CL  ATA  SRL +ARVC++V  +  FPKVV
Subjt:  LWTSRGLSVIASLVRKPFCLYKATADCSRLSYARVCVQVGAESQFPKVV

A0A7J6X6R6 Rna exonuclease1.6e-0552Show/hide
Query:  LWTSRGLSVIASLVRKPFCLYKATADCSRLSYARVCVQVGAESQFPKVVN
        LWT  GLS IAS+V +P C+   TA  SRL++AR+CV+V    ++ KVVN
Subjt:  LWTSRGLSVIASLVRKPFCLYKATADCSRLSYARVCVQVGAESQFPKVVN

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
CTTGAGCTCTGGACTTCTCGGGGCTTAAGTGTTATTGCTAGCCTTGTTCGTAAGCCTTTCTGCCTTTATAAGGCCACTGCAGATTGTAGTCGATTATCTTATGCTCGTGT
TTGTGTTCAAGTGGGTGCGGAGTCTCAGTTTCCTAAGGTTGTGAATGTT
mRNA sequenceShow/hide mRNA sequence
CTTGAGCTCTGGACTTCTCGGGGCTTAAGTGTTATTGCTAGCCTTGTTCGTAAGCCTTTCTGCCTTTATAAGGCCACTGCAGATTGTAGTCGATTATCTTATGCTCGTGT
TTGTGTTCAAGTGGGTGCGGAGTCTCAGTTTCCTAAGGTTGTGAATGTT
Protein sequenceShow/hide protein sequence
LELWTSRGLSVIASLVRKPFCLYKATADCSRLSYARVCVQVGAESQFPKVVNV