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MS000833 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS000833
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionTransposon Tf2-1 polyprotein isoform X1
Genome locationscaffold236:403108..403367
RNA-Seq ExpressionMS000833
SyntenyMS000833
Gene Ontology termsGO:0016020 - membrane (cellular component)
GO:0097159 - organic cyclic compound binding (molecular function)
GO:1901363 - heterocyclic compound binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0025139.1 Transposon Ty3-G Gag-Pol polyprotein [Cucumis melo var. makuwa]5.1e-1955.81Show/hide
Query:  KKVEMPIFDRTDPESWI-SSERYFKIHHLTDSEKVTVVVVSFELDALKWYRWTENRKSFRDWDDLSDRLLHRFRPSSEGDAHEQFM
        KKVEMP+FD TDP+SW+  ++RYFKIH+L+DSEK+TV V+SF+  AL WYR  E R++F  WDDL  ++L RFR + EG    +F+
Subjt:  KKVEMPIFDRTDPESWI-SSERYFKIHHLTDSEKVTVVVVSFELDALKWYRWTENRKSFRDWDDLSDRLLHRFRPSSEGDAHEQFM
KAA0038753.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]1.1e-1855.81Show/hide
Query:  KKVEMPIFDRTDPESWI-SSERYFKIHHLTDSEKVTVVVVSFELDALKWYRWTENRKSFRDWDDLSDRLLHRFRPSSEGDAHEQFM
        KKVEMP+FD TDP+SW+  ++RYFKIH+LTDSE++TV V+SF+  AL WYR  E R++F  WDDL  ++L RFR + EG    +F+
Subjt:  KKVEMPIFDRTDPESWI-SSERYFKIHHLTDSEKVTVVVVSFELDALKWYRWTENRKSFRDWDDLSDRLLHRFRPSSEGDAHEQFM
KAA0058186.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]5.1e-1956.98Show/hide
Query:  KKVEMPIFDRTDPESWI-SSERYFKIHHLTDSEKVTVVVVSFELDALKWYRWTENRKSFRDWDDLSDRLLHRFRPSSEGDAHEQFM
        KKVEMP+FD TDP+SW+  ++RYFKIH+LTDSEK+TV V+SF+  AL WYR  E R++F  WDDL  ++L RFR + EG    +F+
Subjt:  KKVEMPIFDRTDPESWI-SSERYFKIHHLTDSEKVTVVVVSFELDALKWYRWTENRKSFRDWDDLSDRLLHRFRPSSEGDAHEQFM
TYK10372.1 transposon Tf2-1 polyprotein isoform X1 [Cucumis melo var. makuwa]5.1e-1955.81Show/hide
Query:  KKVEMPIFDRTDPESWI-SSERYFKIHHLTDSEKVTVVVVSFELDALKWYRWTENRKSFRDWDDLSDRLLHRFRPSSEGDAHEQFM
        KKVEMP+FD T+P+SW+  ++RYFKIH+LTDSEK+TV V+SF+  AL WYR  E R++F  WDDL  ++L RFR + EG    +F+
Subjt:  KKVEMPIFDRTDPESWI-SSERYFKIHHLTDSEKVTVVVVSFELDALKWYRWTENRKSFRDWDDLSDRLLHRFRPSSEGDAHEQFM
TYK13876.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]5.1e-1955.81Show/hide
Query:  KKVEMPIFDRTDPESWI-SSERYFKIHHLTDSEKVTVVVVSFELDALKWYRWTENRKSFRDWDDLSDRLLHRFRPSSEGDAHEQFM
        KKVEMP+FD T+P+SW+  ++RYFKIH+LTDSEK+TV V+SF+  AL WYR  E R++F  WDDL  ++L RFR + EG    +F+
Subjt:  KKVEMPIFDRTDPESWI-SSERYFKIHHLTDSEKVTVVVVSFELDALKWYRWTENRKSFRDWDDLSDRLLHRFRPSSEGDAHEQFM
TrEMBL top hitse value%identityAlignment
A0A5A7SS61 Ty3/gypsy retrotransposon protein5.5e-1955.81Show/hide
Query:  KKVEMPIFDRTDPESWI-SSERYFKIHHLTDSEKVTVVVVSFELDALKWYRWTENRKSFRDWDDLSDRLLHRFRPSSEGDAHEQFM
        KKVEMP+FD TDP+SW+  ++RYFKIH+LTDSE++TV V+SF+  AL WYR  E R++F  WDDL  ++L RFR + EG    +F+
Subjt:  KKVEMPIFDRTDPESWI-SSERYFKIHHLTDSEKVTVVVVSFELDALKWYRWTENRKSFRDWDDLSDRLLHRFRPSSEGDAHEQFM
A0A5A7UVI2 Ty3/gypsy retrotransposon protein2.5e-1956.98Show/hide
Query:  KKVEMPIFDRTDPESWI-SSERYFKIHHLTDSEKVTVVVVSFELDALKWYRWTENRKSFRDWDDLSDRLLHRFRPSSEGDAHEQFM
        KKVEMP+FD TDP+SW+  ++RYFKIH+LTDSEK+TV V+SF+  AL WYR  E R++F  WDDL  ++L RFR + EG    +F+
Subjt:  KKVEMPIFDRTDPESWI-SSERYFKIHHLTDSEKVTVVVVSFELDALKWYRWTENRKSFRDWDDLSDRLLHRFRPSSEGDAHEQFM
A0A5D3CGJ6 Transposon Tf2-1 polyprotein isoform X12.5e-1955.81Show/hide
Query:  KKVEMPIFDRTDPESWI-SSERYFKIHHLTDSEKVTVVVVSFELDALKWYRWTENRKSFRDWDDLSDRLLHRFRPSSEGDAHEQFM
        KKVEMP+FD T+P+SW+  ++RYFKIH+LTDSEK+TV V+SF+  AL WYR  E R++F  WDDL  ++L RFR + EG    +F+
Subjt:  KKVEMPIFDRTDPESWI-SSERYFKIHHLTDSEKVTVVVVSFELDALKWYRWTENRKSFRDWDDLSDRLLHRFRPSSEGDAHEQFM
A0A5D3CU05 Ty3/gypsy retrotransposon protein2.5e-1955.81Show/hide
Query:  KKVEMPIFDRTDPESWI-SSERYFKIHHLTDSEKVTVVVVSFELDALKWYRWTENRKSFRDWDDLSDRLLHRFRPSSEGDAHEQFM
        KKVEMP+FD T+P+SW+  ++RYFKIH+LTDSEK+TV V+SF+  AL WYR  E R++F  WDDL  ++L RFR + EG    +F+
Subjt:  KKVEMPIFDRTDPESWI-SSERYFKIHHLTDSEKVTVVVVSFELDALKWYRWTENRKSFRDWDDLSDRLLHRFRPSSEGDAHEQFM
A0A5D3DIM6 Transposon Ty3-G Gag-Pol polyprotein2.5e-1955.81Show/hide
Query:  KKVEMPIFDRTDPESWI-SSERYFKIHHLTDSEKVTVVVVSFELDALKWYRWTENRKSFRDWDDLSDRLLHRFRPSSEGDAHEQFM
        KKVEMP+FD TDP+SW+  ++RYFKIH+L+DSEK+TV V+SF+  AL WYR  E R++F  WDDL  ++L RFR + EG    +F+
Subjt:  KKVEMPIFDRTDPESWI-SSERYFKIHHLTDSEKVTVVVVSFELDALKWYRWTENRKSFRDWDDLSDRLLHRFRPSSEGDAHEQFM
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G67020.1 unknown protein5.4e-1140Show/hide
Query:  KKVEMPIFDRTDPESWISS-ERYFKIHHLTDSEKVTVVVVSFELDALKWYRWTENRKSFRDWDDLSDRLLHRFRP
        +++EMP+FD +    W S  ER+F++    DS+K+ +V +S E  ALKW+    +   FRDW+    RLL RF P
Subjt:  KKVEMPIFDRTDPESWISS-ERYFKIHHLTDSEKVTVVVVSFELDALKWYRWTENRKSFRDWDDLSDRLLHRFRP

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
AAAAAGGTGGAAATGCCCATCTTTGATAGAACCGATCCTGAGTCGTGGATTTCATCCGAGAGGTACTTTAAAATTCATCACTTGACTGATTCTGAAAAAGTAACTGTTGT
AGTTGTTAGTTTTGAATTGGATGCTTTGAAGTGGTATCGTTGGACTGAAAATCGAAAATCATTCCGTGATTGGGACGATTTGAGTGATCGATTACTTCATCGTTTCCGAC
CATCTAGTGAGGGAGATGCTCACGAACAATTTATGGGA
mRNA sequenceShow/hide mRNA sequence
AAAAAGGTGGAAATGCCCATCTTTGATAGAACCGATCCTGAGTCGTGGATTTCATCCGAGAGGTACTTTAAAATTCATCACTTGACTGATTCTGAAAAAGTAACTGTTGT
AGTTGTTAGTTTTGAATTGGATGCTTTGAAGTGGTATCGTTGGACTGAAAATCGAAAATCATTCCGTGATTGGGACGATTTGAGTGATCGATTACTTCATCGTTTCCGAC
CATCTAGTGAGGGAGATGCTCACGAACAATTTATGGGA
Protein sequenceShow/hide protein sequence
KKVEMPIFDRTDPESWISSERYFKIHHLTDSEKVTVVVVSFELDALKWYRWTENRKSFRDWDDLSDRLLHRFRPSSEGDAHEQFMG