; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS000858 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS000858
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionRetrotran_gag_3 domain-containing protein
Genome locationscaffold650:257891..258148
RNA-Seq ExpressionMS000858
SyntenyMS000858
Gene Ontology termsGO:0005488 - binding (molecular function)
InterPro domainsIPR029472 - Retrotransposon Copia-like, N-terminal


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008448007.1 PREDICTED: uncharacterized protein LOC103490319 isoform X2 [Cucumis melo]1.3e-1965.12Show/hide
Query:  LSNFCNLISFLLDSTNFVLCKFQLTAILNSHKLFGFIDGSFVPHAKTISSPASSNGLPQLAPNPAYEDWLARDQTLMTLINATLSP
        LSN CNLIS  LDSTNFVL KFQLTAIL +HKL+GFIDG+     +T +S ++S   PQ   NP+YEDW+A+DQ LMT+INATLSP
Subjt:  LSNFCNLISFLLDSTNFVLCKFQLTAILNSHKLFGFIDGSFVPHAKTISSPASSNGLPQLAPNPAYEDWLARDQTLMTLINATLSP

XP_008448008.1 PREDICTED: uncharacterized protein LOC103490319 isoform X3 [Cucumis melo]1.3e-1965.12Show/hide
Query:  LSNFCNLISFLLDSTNFVLCKFQLTAILNSHKLFGFIDGSFVPHAKTISSPASSNGLPQLAPNPAYEDWLARDQTLMTLINATLSP
        LSN CNLIS  LDSTNFVL KFQLTAIL +HKL+GFIDG+     +T +S ++S   PQ   NP+YEDW+A+DQ LMT+INATLSP
Subjt:  LSNFCNLISFLLDSTNFVLCKFQLTAILNSHKLFGFIDGSFVPHAKTISSPASSNGLPQLAPNPAYEDWLARDQTLMTLINATLSP

XP_022152751.1 uncharacterized protein LOC111020396 isoform X1 [Momordica charantia]1.3e-1962.92Show/hide
Query:  LSNFCNLISFLLDSTNFVLCKFQLTAILNSHKLFGFIDGSFVP-----HAKTISSPASSNGLPQLAPNPAYEDWLARDQTLMTLINATL
        LSN CNLIS  LDSTNF+L KFQLTAIL +HKLF FIDGS  P      A T+ S +S +   Q+ PN  Y DW+ARDQ LMTLINATL
Subjt:  LSNFCNLISFLLDSTNFVLCKFQLTAILNSHKLFGFIDGSFVP-----HAKTISSPASSNGLPQLAPNPAYEDWLARDQTLMTLINATL

XP_022152753.1 uncharacterized protein LOC111020396 isoform X3 [Momordica charantia]1.3e-1962.92Show/hide
Query:  LSNFCNLISFLLDSTNFVLCKFQLTAILNSHKLFGFIDGSFVP-----HAKTISSPASSNGLPQLAPNPAYEDWLARDQTLMTLINATL
        LSN CNLIS  LDSTNF+L KFQLTAIL +HKLF FIDGS  P      A T+ S +S +   Q+ PN  Y DW+ARDQ LMTLINATL
Subjt:  LSNFCNLISFLLDSTNFVLCKFQLTAILNSHKLFGFIDGSFVP-----HAKTISSPASSNGLPQLAPNPAYEDWLARDQTLMTLINATL

XP_022152754.1 uncharacterized protein LOC111020396 isoform X4 [Momordica charantia]1.3e-1962.92Show/hide
Query:  LSNFCNLISFLLDSTNFVLCKFQLTAILNSHKLFGFIDGSFVP-----HAKTISSPASSNGLPQLAPNPAYEDWLARDQTLMTLINATL
        LSN CNLIS  LDSTNF+L KFQLTAIL +HKLF FIDGS  P      A T+ S +S +   Q+ PN  Y DW+ARDQ LMTLINATL
Subjt:  LSNFCNLISFLLDSTNFVLCKFQLTAILNSHKLFGFIDGSFVP-----HAKTISSPASSNGLPQLAPNPAYEDWLARDQTLMTLINATL

TrEMBL top hitse value%identityAlignment
A0A5D3CLI6 T4.56.5e-2065.12Show/hide
Query:  LSNFCNLISFLLDSTNFVLCKFQLTAILNSHKLFGFIDGSFVPHAKTISSPASSNGLPQLAPNPAYEDWLARDQTLMTLINATLSP
        LSN CNLIS  LDSTNFVL KFQLTAIL +HKL+GFIDG+     +T +S ++S   PQ   NP+YEDW+A+DQ LMT+INATLSP
Subjt:  LSNFCNLISFLLDSTNFVLCKFQLTAILNSHKLFGFIDGSFVPHAKTISSPASSNGLPQLAPNPAYEDWLARDQTLMTLINATLSP

A0A6J1DFQ7 uncharacterized protein LOC111020396 isoform X36.5e-2062.92Show/hide
Query:  LSNFCNLISFLLDSTNFVLCKFQLTAILNSHKLFGFIDGSFVP-----HAKTISSPASSNGLPQLAPNPAYEDWLARDQTLMTLINATL
        LSN CNLIS  LDSTNF+L KFQLTAIL +HKLF FIDGS  P      A T+ S +S +   Q+ PN  Y DW+ARDQ LMTLINATL
Subjt:  LSNFCNLISFLLDSTNFVLCKFQLTAILNSHKLFGFIDGSFVP-----HAKTISSPASSNGLPQLAPNPAYEDWLARDQTLMTLINATL

A0A6J1DGZ1 uncharacterized protein LOC111020396 isoform X46.5e-2062.92Show/hide
Query:  LSNFCNLISFLLDSTNFVLCKFQLTAILNSHKLFGFIDGSFVP-----HAKTISSPASSNGLPQLAPNPAYEDWLARDQTLMTLINATL
        LSN CNLIS  LDSTNF+L KFQLTAIL +HKLF FIDGS  P      A T+ S +S +   Q+ PN  Y DW+ARDQ LMTLINATL
Subjt:  LSNFCNLISFLLDSTNFVLCKFQLTAILNSHKLFGFIDGSFVP-----HAKTISSPASSNGLPQLAPNPAYEDWLARDQTLMTLINATL

A0A6J1DH48 uncharacterized protein LOC111020396 isoform X26.5e-2062.92Show/hide
Query:  LSNFCNLISFLLDSTNFVLCKFQLTAILNSHKLFGFIDGSFVP-----HAKTISSPASSNGLPQLAPNPAYEDWLARDQTLMTLINATL
        LSN CNLIS  LDSTNF+L KFQLTAIL +HKLF FIDGS  P      A T+ S +S +   Q+ PN  Y DW+ARDQ LMTLINATL
Subjt:  LSNFCNLISFLLDSTNFVLCKFQLTAILNSHKLFGFIDGSFVP-----HAKTISSPASSNGLPQLAPNPAYEDWLARDQTLMTLINATL

A0A6J1DIP4 uncharacterized protein LOC111020396 isoform X16.5e-2062.92Show/hide
Query:  LSNFCNLISFLLDSTNFVLCKFQLTAILNSHKLFGFIDGSFVP-----HAKTISSPASSNGLPQLAPNPAYEDWLARDQTLMTLINATL
        LSN CNLIS  LDSTNF+L KFQLTAIL +HKLF FIDGS  P      A T+ S +S +   Q+ PN  Y DW+ARDQ LMTLINATL
Subjt:  LSNFCNLISFLLDSTNFVLCKFQLTAILNSHKLFGFIDGSFVP-----HAKTISSPASSNGLPQLAPNPAYEDWLARDQTLMTLINATL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
CTATCGAATTTTTGCAATTTGATTTCTTTCCTGCTTGATTCCACGAATTTTGTTCTGTGTAAATTCCAACTCACAGCAATTTTGAACTCCCACAAACTGTTTGGTTTTAT
CGATGGCTCCTTTGTACCCCATGCGAAGACAATTTCTTCGCCGGCTTCATCTAATGGATTGCCTCAATTGGCTCCAAATCCTGCATATGAAGATTGGCTTGCTCGTGATC
AGACGCTCATGACATTGATCAATGCTACACTTTCTCCC
mRNA sequenceShow/hide mRNA sequence
CTATCGAATTTTTGCAATTTGATTTCTTTCCTGCTTGATTCCACGAATTTTGTTCTGTGTAAATTCCAACTCACAGCAATTTTGAACTCCCACAAACTGTTTGGTTTTAT
CGATGGCTCCTTTGTACCCCATGCGAAGACAATTTCTTCGCCGGCTTCATCTAATGGATTGCCTCAATTGGCTCCAAATCCTGCATATGAAGATTGGCTTGCTCGTGATC
AGACGCTCATGACATTGATCAATGCTACACTTTCTCCC
Protein sequenceShow/hide protein sequence
LSNFCNLISFLLDSTNFVLCKFQLTAILNSHKLFGFIDGSFVPHAKTISSPASSNGLPQLAPNPAYEDWLARDQTLMTLINATLSP