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MS000859 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS000859
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionRetrotran_gag_3 domain-containing protein
Genome locationscaffold650:258195..258338
RNA-Seq ExpressionMS000859
SyntenyMS000859
Gene Ontology termsGO:0005488 - binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6588985.1 Retrovirus-related Pol polyprotein from transposon RE1, partial [Cucurbita argyrosperma subsp. sororia]6.1e-0660.42Show/hide
Query:  VVGSTSLKQIWETFERHYSSSSRTNIVNLKSDLHSMSKKSAASFDDYV
        VVGST+ KQ+W    + YSSSSR+N+VNLKSDL ++SKKS  S D Y+
Subjt:  VVGSTSLKQIWETFERHYSSSSRTNIVNLKSDLHSMSKKSAASFDDYV

KAG7015254.1 hypothetical protein SDJN02_22888, partial [Cucurbita argyrosperma subsp. argyrosperma]6.1e-0660.42Show/hide
Query:  VVGSTSLKQIWETFERHYSSSSRTNIVNLKSDLHSMSKKSAASFDDYV
        VVGST+ KQ+W    + YSSSSR+N+VNLKSDL ++SKKS  S D Y+
Subjt:  VVGSTSLKQIWETFERHYSSSSRTNIVNLKSDLHSMSKKSAASFDDYV

XP_022150845.1 uncharacterized protein LOC111018892 [Momordica charantia]2.1e-0662.5Show/hide
Query:  VVGSTSLKQIWETFERHYSSSSRTNIVNLKSDLHSMSKKSAASFDDYV
        VV S + KQ+WE  E+HYSS+SRTN+VNLKSDL S+ KK+  S D YV
Subjt:  VVGSTSLKQIWETFERHYSSSSRTNIVNLKSDLHSMSKKSAASFDDYV

XP_022157455.1 uncharacterized protein LOC111024149 [Momordica charantia]1.2e-0972.92Show/hide
Query:  VVGSTSLKQIWETFERHYSSSSRTNIVNLKSDLHSMSKKSAASFDDYV
        VVGSTS K+IW+T E+HYSSSSRTN+VNLKSDL S+SKK     DDYV
Subjt:  VVGSTSLKQIWETFERHYSSSSRTNIVNLKSDLHSMSKKSAASFDDYV

XP_022158689.1 uncharacterized protein LOC111025150 [Momordica charantia]3.3e-0764.58Show/hide
Query:  VVGSTSLKQIWETFERHYSSSSRTNIVNLKSDLHSMSKKSAASFDDYV
        VVG  S +Q+W+T  +HYSSSSRTN+VNLKSDL S+SKK   S D YV
Subjt:  VVGSTSLKQIWETFERHYSSSSRTNIVNLKSDLHSMSKKSAASFDDYV

TrEMBL top hitse value%identityAlignment
A0A5D3D3T6 Retrotran_gag_3 domain-containing protein1.9e-0569.23Show/hide
Query:  VVGSTSLKQIWETFERHYSSSSRTNIVNLKSDLHSMSKK
        VVG  S  Q+W+T ERHYSS++RTNIVNLKSDL  +SKK
Subjt:  VVGSTSLKQIWETFERHYSSSSRTNIVNLKSDLHSMSKK

A0A6J1D9L6 uncharacterized protein LOC1110188921.0e-0662.5Show/hide
Query:  VVGSTSLKQIWETFERHYSSSSRTNIVNLKSDLHSMSKKSAASFDDYV
        VV S + KQ+WE  E+HYSS+SRTN+VNLKSDL S+ KK+  S D YV
Subjt:  VVGSTSLKQIWETFERHYSSSSRTNIVNLKSDLHSMSKKSAASFDDYV

A0A6J1DT57 uncharacterized protein LOC1110241495.8e-1072.92Show/hide
Query:  VVGSTSLKQIWETFERHYSSSSRTNIVNLKSDLHSMSKKSAASFDDYV
        VVGSTS K+IW+T E+HYSSSSRTN+VNLKSDL S+SKK     DDYV
Subjt:  VVGSTSLKQIWETFERHYSSSSRTNIVNLKSDLHSMSKKSAASFDDYV

A0A6J1DYF1 uncharacterized protein LOC1110257093.3e-0556.25Show/hide
Query:  VVGSTSLKQIWETFERHYSSSSRTNIVNLKSDLHSMSKKSAASFDDYV
        +VG  S +Q+W+T  ++YSSSSRTN+VNLKS+L S+SKK   S D Y+
Subjt:  VVGSTSLKQIWETFERHYSSSSRTNIVNLKSDLHSMSKKSAASFDDYV

A0A6J1E049 uncharacterized protein LOC1110251501.6e-0764.58Show/hide
Query:  VVGSTSLKQIWETFERHYSSSSRTNIVNLKSDLHSMSKKSAASFDDYV
        VVG  S +Q+W+T  +HYSSSSRTN+VNLKSDL S+SKK   S D YV
Subjt:  VVGSTSLKQIWETFERHYSSSSRTNIVNLKSDLHSMSKKSAASFDDYV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GTTGTTGGTAGCACTTCTTTGAAACAAATTTGGGAGACATTTGAGAGGCATTATTCTTCCAGTTCTCGAACGAACATCGTCAACCTCAAGTCTGACCTTCATTCTATGTC
CAAGAAGTCGGCTGCATCTTTTGATGATTATGTG
mRNA sequenceShow/hide mRNA sequence
GTTGTTGGTAGCACTTCTTTGAAACAAATTTGGGAGACATTTGAGAGGCATTATTCTTCCAGTTCTCGAACGAACATCGTCAACCTCAAGTCTGACCTTCATTCTATGTC
CAAGAAGTCGGCTGCATCTTTTGATGATTATGTG
Protein sequenceShow/hide protein sequence
VVGSTSLKQIWETFERHYSSSSRTNIVNLKSDLHSMSKKSAASFDDYV