CuGenDBv2

Gene ID	MS000876
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Phenylalanyl-tRNA synthetase
Genome location	scaffold36:226..1517
RNA-Seq Expression	MS000876
Synteny	MS000876
Gene Ontology terms	GO:0006432 - phenylalanyl-tRNA aminoacylation (biological process) GO:0005759 - mitochondrial matrix (cellular component) GO:0000049 - tRNA binding (molecular function) GO:0004826 - phenylalanine-tRNA ligase activity (molecular function) GO:0005524 - ATP binding (molecular function)
InterPro domains	IPR004530 - Phenylalanyl-tRNA synthetase, class IIc, mitochondrial

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG6594395.1 Phenylalanine--tRNA ligase, chloroplastic/mitochondrial, partial [Cucurbita argyrosperma subsp. sororia]

6.0e-48

78.46

Show/hide

Query:  MASALPLTRSILFTNASNHLRSNCLRSFTFSASFSSSSPLSSDTVYRKKWRQPVSSLLELGGVVIAKDDIVRDDPTINVPDNIF-KLGMQLHRRDNHPLG
        MAS LPLTR+ LF +ASNHLR NCLRSF FSA+F      SSD+V+ KKWR PVSSL ELGGV IA+DD+VRDDPT NVPDNIF KLG+QLHR+DNHPLG
Subjt:  MASALPLTRSILFTNASNHLRSNCLRSFTFSASFSSSSPLSSDTVYRKKWRQPVSSLLELGGVVIAKDDIVRDDPTINVPDNIF-KLGMQLHRRDNHPLG

Query:  ILKNGIYNYFDTNYSNKFDKFDDLRPIVSV
        ILKN IYNYFDTNYSNKFDKFDDL PIVSV
Subjt:  ILKNGIYNYFDTNYSNKFDKFDDLRPIVSV

XP_004134536.1 phenylalanine--tRNA ligase, chloroplastic/mitochondrial [Cucumis sativus]

4.6e-48

79.23

Show/hide

Query:  MASALPLTRSILFTNASNHLRSNCLRSFTFSASFSSSSPLSSDTVYRKKWRQPVSSLLELGGVVIAKDDIVRDDPTINVPDNIF-KLGMQLHRRDNHPLG
        MAS L LT+++LFT ASN LR NCLR+    ASFSSSS +SSD+++RKKW QPVSSLLELGGV I KDD+VRDDPT NVPDNIF KLGMQLHRRDNHPLG
Subjt:  MASALPLTRSILFTNASNHLRSNCLRSFTFSASFSSSSPLSSDTVYRKKWRQPVSSLLELGGVVIAKDDIVRDDPTINVPDNIF-KLGMQLHRRDNHPLG

Query:  ILKNGIYNYFDTNYSNKFDKFDDLRPIVSV
        ILKN IYNYFDTNYSNKF KFDDL PIVSV
Subjt:  ILKNGIYNYFDTNYSNKFDKFDDLRPIVSV

XP_008439478.1 PREDICTED: phenylalanine--tRNA ligase, chloroplastic/mitochondrial [Cucumis melo]

5.4e-49

81.54

Show/hide

Query:  MASALPLTRSILFTNASNHLRSNCLRSFTFSASFSSSSPLSSDTVYRKKWRQPVSSLLELGGVVIAKDDIVRDDPTINVPDNIF-KLGMQLHRRDNHPLG
        MAS L LT+++LFT ASN LR N LR+  FSASFSSSS LSSD+++RKKW QPVSSLLELGGV IAKDD+VRDDPT NVPDNIF KLGMQLHRRDNHPLG
Subjt:  MASALPLTRSILFTNASNHLRSNCLRSFTFSASFSSSSPLSSDTVYRKKWRQPVSSLLELGGVVIAKDDIVRDDPTINVPDNIF-KLGMQLHRRDNHPLG

Query:  ILKNGIYNYFDTNYSNKFDKFDDLRPIVSV
        ILKN IYNYFDTNYSNKF KFDDL PIVSV
Subjt:  ILKNGIYNYFDTNYSNKFDKFDDLRPIVSV

XP_022146633.1 phenylalanine--tRNA ligase, chloroplastic/mitochondrial [Momordica charantia]

1.2e-51

85.38

Show/hide

Query:  MASALPLTRSILFTNASNHLRSNCLRSFTFSASFSSSSPLSSDTVYRKKWRQPVSSLLELGGVVIAKDDIVRDDPTINVPDNIF-KLGMQLHRRDNHPLG
        MAS LPLTR+ILFTNAS  LR NCLR+F FSASFS     SSDTV+RKKWRQPVSSLL+LGGVVIAKDD+VRDDPT NVPDNIF KLGMQLHRRDNHPLG
Subjt:  MASALPLTRSILFTNASNHLRSNCLRSFTFSASFSSSSPLSSDTVYRKKWRQPVSSLLELGGVVIAKDDIVRDDPTINVPDNIF-KLGMQLHRRDNHPLG

Query:  ILKNGIYNYFDTNYSNKFDKFDDLRPIVSV
        ILKN IYNYFDTNYSNKFDKFDDL PIVSV
Subjt:  ILKNGIYNYFDTNYSNKFDKFDDLRPIVSV

XP_038883400.1 phenylalanine--tRNA ligase, chloroplastic/mitochondrial [Benincasa hispida]

1.2e-51

83.08

Show/hide

Query:  MASALPLTRSILFTNASNHLRSNCLRSFTFSASFSSSSPLSSDTVYRKKWRQPVSSLLELGGVVIAKDDIVRDDPTINVPDNIF-KLGMQLHRRDNHPLG
        MAS L LT+++LFTNASN LR NCLR+F FSASFSSSS LSSD V+RKKWRQPVSSLLELGG+ IAKDD+VRDDPT NVPDNIF KLGMQLHRRDNHPLG
Subjt:  MASALPLTRSILFTNASNHLRSNCLRSFTFSASFSSSSPLSSDTVYRKKWRQPVSSLLELGGVVIAKDDIVRDDPTINVPDNIF-KLGMQLHRRDNHPLG

Query:  ILKNGIYNYFDTNYSNKFDKFDDLRPIVSV
        ILKN IY YFD NYSNKF+KFDDL PIVSV
Subjt:  ILKNGIYNYFDTNYSNKFDKFDDLRPIVSV

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KJ29 Phenylalanyl-tRNA synthetase

2.2e-48

79.23

Show/hide

Query:  MASALPLTRSILFTNASNHLRSNCLRSFTFSASFSSSSPLSSDTVYRKKWRQPVSSLLELGGVVIAKDDIVRDDPTINVPDNIF-KLGMQLHRRDNHPLG
        MAS L LT+++LFT ASN LR NCLR+    ASFSSSS +SSD+++RKKW QPVSSLLELGGV I KDD+VRDDPT NVPDNIF KLGMQLHRRDNHPLG
Subjt:  MASALPLTRSILFTNASNHLRSNCLRSFTFSASFSSSSPLSSDTVYRKKWRQPVSSLLELGGVVIAKDDIVRDDPTINVPDNIF-KLGMQLHRRDNHPLG

Query:  ILKNGIYNYFDTNYSNKFDKFDDLRPIVSV
        ILKN IYNYFDTNYSNKF KFDDL PIVSV
Subjt:  ILKNGIYNYFDTNYSNKFDKFDDLRPIVSV

A0A1S3AYV5 Phenylalanyl-tRNA synthetase

2.6e-49

81.54

Show/hide

Query:  MASALPLTRSILFTNASNHLRSNCLRSFTFSASFSSSSPLSSDTVYRKKWRQPVSSLLELGGVVIAKDDIVRDDPTINVPDNIF-KLGMQLHRRDNHPLG
        MAS L LT+++LFT ASN LR N LR+  FSASFSSSS LSSD+++RKKW QPVSSLLELGGV IAKDD+VRDDPT NVPDNIF KLGMQLHRRDNHPLG
Subjt:  MASALPLTRSILFTNASNHLRSNCLRSFTFSASFSSSSPLSSDTVYRKKWRQPVSSLLELGGVVIAKDDIVRDDPTINVPDNIF-KLGMQLHRRDNHPLG

Query:  ILKNGIYNYFDTNYSNKFDKFDDLRPIVSV
        ILKN IYNYFDTNYSNKF KFDDL PIVSV
Subjt:  ILKNGIYNYFDTNYSNKFDKFDDLRPIVSV

A0A5D3CN83 Phenylalanyl-tRNA synthetase

2.6e-49

81.54

Show/hide

Query:  MASALPLTRSILFTNASNHLRSNCLRSFTFSASFSSSSPLSSDTVYRKKWRQPVSSLLELGGVVIAKDDIVRDDPTINVPDNIF-KLGMQLHRRDNHPLG
        MAS L LT+++LFT ASN LR N LR+  FSASFSSSS LSSD+++RKKW QPVSSLLELGGV IAKDD+VRDDPT NVPDNIF KLGMQLHRRDNHPLG
Subjt:  MASALPLTRSILFTNASNHLRSNCLRSFTFSASFSSSSPLSSDTVYRKKWRQPVSSLLELGGVVIAKDDIVRDDPTINVPDNIF-KLGMQLHRRDNHPLG

Query:  ILKNGIYNYFDTNYSNKFDKFDDLRPIVSV
        ILKN IYNYFDTNYSNKF KFDDL PIVSV
Subjt:  ILKNGIYNYFDTNYSNKFDKFDDLRPIVSV

A0A6J1CZ26 Phenylalanyl-tRNA synthetase

5.6e-52

85.38

Show/hide

Query:  MASALPLTRSILFTNASNHLRSNCLRSFTFSASFSSSSPLSSDTVYRKKWRQPVSSLLELGGVVIAKDDIVRDDPTINVPDNIF-KLGMQLHRRDNHPLG
        MAS LPLTR+ILFTNAS  LR NCLR+F FSASFS     SSDTV+RKKWRQPVSSLL+LGGVVIAKDD+VRDDPT NVPDNIF KLGMQLHRRDNHPLG
Subjt:  MASALPLTRSILFTNASNHLRSNCLRSFTFSASFSSSSPLSSDTVYRKKWRQPVSSLLELGGVVIAKDDIVRDDPTINVPDNIF-KLGMQLHRRDNHPLG

Query:  ILKNGIYNYFDTNYSNKFDKFDDLRPIVSV
        ILKN IYNYFDTNYSNKFDKFDDL PIVSV
Subjt:  ILKNGIYNYFDTNYSNKFDKFDDLRPIVSV

E5GCL5 Phenylalanyl-tRNA synthetase

2.6e-49

81.54

Show/hide

Query:  MASALPLTRSILFTNASNHLRSNCLRSFTFSASFSSSSPLSSDTVYRKKWRQPVSSLLELGGVVIAKDDIVRDDPTINVPDNIF-KLGMQLHRRDNHPLG
        MAS L LT+++LFT ASN LR N LR+  FSASFSSSS LSSD+++RKKW QPVSSLLELGGV IAKDD+VRDDPT NVPDNIF KLGMQLHRRDNHPLG
Subjt:  MASALPLTRSILFTNASNHLRSNCLRSFTFSASFSSSSPLSSDTVYRKKWRQPVSSLLELGGVVIAKDDIVRDDPTINVPDNIF-KLGMQLHRRDNHPLG

Query:  ILKNGIYNYFDTNYSNKFDKFDDLRPIVSV
        ILKN IYNYFDTNYSNKF KFDDL PIVSV
Subjt:  ILKNGIYNYFDTNYSNKFDKFDDLRPIVSV

SwissProt top hits

e value

%identity

Alignment

Q94K73 Phenylalanine--tRNA ligase, chloroplastic/mitochondrial

3.4e-30

58.54

Show/hide

Query:  RSILFTNAS-NHLRSNCLRSFTFSASFSSSSPLSSDTVYRKKWRQPVSSLLELGGVVIAKDDIVR-DDPTINVPDNIF-KLGMQLHRRDNHPLGILKNGI
        +S +F+ AS   L SN  + F+F +SFSSS+  S   +  +K R P+ S +++GGV IA++D+VR DDPT NVPD+IF KLGMQLHRRD HP+GILKN I
Subjt:  RSILFTNAS-NHLRSNCLRSFTFSASFSSSSPLSSDTVYRKKWRQPVSSLLELGGVVIAKDDIVR-DDPTINVPDNIF-KLGMQLHRRDNHPLGILKNGI

Query:  YNYFDTNYSNKFDKFDDLRPIVS
        Y+YFD+NYSNKF+KF+DL PIV+
Subjt:  YNYFDTNYSNKFDKFDDLRPIVS

Arabidopsis top hits

e value

%identity

Alignment

AT3G58140.1 phenylalanyl-tRNA synthetase class IIc family protein

2.4e-31

58.54

Show/hide

Query:  RSILFTNAS-NHLRSNCLRSFTFSASFSSSSPLSSDTVYRKKWRQPVSSLLELGGVVIAKDDIVR-DDPTINVPDNIF-KLGMQLHRRDNHPLGILKNGI
        +S +F+ AS   L SN  + F+F +SFSSS+  S   +  +K R P+ S +++GGV IA++D+VR DDPT NVPD+IF KLGMQLHRRD HP+GILKN I
Subjt:  RSILFTNAS-NHLRSNCLRSFTFSASFSSSSPLSSDTVYRKKWRQPVSSLLELGGVVIAKDDIVR-DDPTINVPDNIF-KLGMQLHRRDNHPLGILKNGI

Query:  YNYFDTNYSNKFDKFDDLRPIVS
        Y+YFD+NYSNKF+KF+DL PIV+
Subjt:  YNYFDTNYSNKFDKFDDLRPIVS

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGCATCCGCTCTGCCACTAACGCGATCCATTCTCTTCACCAATGCTTCTAATCATCTGCGGAGTAATTGCCTCAGAAGCTTCACCTTCTCTGCATCCTTCTCCTCCTC
CTCACCTCTGTCTTCCGATACCGTTTACCGTAAGAAATGGAGACAGCCGGTGTCTTCACTCCTTGAGCTCGGTGGCGTCGTAATTGCCAAAGATGATATTGTGAGGGATG
ATCCTACGATCAATGTCCCAGATAATATTTTCAAACTTGGCATGCAACTCCACAGAAGAGATAACCATCCACTTGGTATTCTGAAGAATGGGATATACAACTATTTTGAT
ACAAATTACTCAAATAAGTTCGATAAGTTTGATGACCTCAGGCCAATTGTTTCCGTG

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MASALPLTRSILFTNASNHLRSNCLRSFTFSASFSSSSPLSSDTVYRKKWRQPVSSLLELGGVVIAKDDIVRDDPTINVPDNIFKLGMQLHRRDNHPLGILKNGIYNYFD
TNYSNKFDKFDDLRPIVSV

MS000876 (gene) of Bitter gourd (TR) v1 genome