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MS000884 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS000884
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionprotein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial
Genome locationscaffold36:61249..61392
RNA-Seq ExpressionMS000884
SyntenyMS000884
Gene Ontology termsGO:0030488 - tRNA methylation (biological process)
GO:0070475 - rRNA base methylation (biological process)
GO:0005737 - cytoplasm (cellular component)
GO:0008173 - RNA methyltransferase activity (molecular function)
GO:0046872 - metal ion binding (molecular function)
GO:0051539 - 4 iron, 4 sulfur cluster binding (molecular function)
InterPro domainsIPR043459 - NFD6/NOXY2-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7029191.1 hypothetical protein SDJN02_07528, partial [Cucurbita argyrosperma subsp. argyrosperma]2.6e-1295.24Show/hide
Query:  SFRLPVELSSVQSLMPLHSVTASALFTSLLSLHNNSWGCLSE
        +FRLPVELSSVQSLMPLHS TASALFTSLLSLHNNSWGCLSE
Subjt:  SFRLPVELSSVQSLMPLHSVTASALFTSLLSLHNNSWGCLSE
XP_022159141.1 protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial [Momordica charantia]4.4e-1295.24Show/hide
Query:  SFRLPVELSSVQSLMPLHSVTASALFTSLLSLHNNSWGCLSE
        + RLPVELSSVQSLMPLHSVTASALFTSLLSLHNNSWGCLSE
Subjt:  SFRLPVELSSVQSLMPLHSVTASALFTSLLSLHNNSWGCLSE
XP_022961783.1 protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial [Cucurbita moschata]2.6e-1295.24Show/hide
Query:  SFRLPVELSSVQSLMPLHSVTASALFTSLLSLHNNSWGCLSE
        +FRLPVELSSVQSLMPLHS TASALFTSLLSLHNNSWGCLSE
Subjt:  SFRLPVELSSVQSLMPLHSVTASALFTSLLSLHNNSWGCLSE
XP_022996536.1 uncharacterized protein LOC111491756 isoform X2 [Cucurbita maxima]2.6e-1295.24Show/hide
Query:  SFRLPVELSSVQSLMPLHSVTASALFTSLLSLHNNSWGCLSE
        +FRLPVELSSVQSLMPLHS TASALFTSLLSLHNNSWGCLSE
Subjt:  SFRLPVELSSVQSLMPLHSVTASALFTSLLSLHNNSWGCLSE
XP_038885250.1 uncharacterized protein LOC120075707 isoform X1 [Benincasa hispida]1.0e-1391.67Show/hide
Query:  YAKCAYSFRLPVELSSVQSLMPLHSVTASALFTSLLSLHNNSWGCLSE
        YAKC   FRLPVELSSVQSLMPLHSVTASALFTSLLSLHNNSWG LSE
Subjt:  YAKCAYSFRLPVELSSVQSLMPLHSVTASALFTSLLSLHNNSWGCLSE
TrEMBL top hitse value%identityAlignment
A0A6J1E309 protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial2.1e-1295.24Show/hide
Query:  SFRLPVELSSVQSLMPLHSVTASALFTSLLSLHNNSWGCLSE
        + RLPVELSSVQSLMPLHSVTASALFTSLLSLHNNSWGCLSE
Subjt:  SFRLPVELSSVQSLMPLHSVTASALFTSLLSLHNNSWGCLSE
A0A6J1HCT7 protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial1.2e-1295.24Show/hide
Query:  SFRLPVELSSVQSLMPLHSVTASALFTSLLSLHNNSWGCLSE
        +FRLPVELSSVQSLMPLHS TASALFTSLLSLHNNSWGCLSE
Subjt:  SFRLPVELSSVQSLMPLHSVTASALFTSLLSLHNNSWGCLSE
A0A6J1K524 uncharacterized protein LOC111491756 isoform X21.2e-1295.24Show/hide
Query:  SFRLPVELSSVQSLMPLHSVTASALFTSLLSLHNNSWGCLSE
        +FRLPVELSSVQSLMPLHS TASALFTSLLSLHNNSWGCLSE
Subjt:  SFRLPVELSSVQSLMPLHSVTASALFTSLLSLHNNSWGCLSE
A0A6P4ADM6 uncharacterized protein LOC1074287312.6e-1085Show/hide
Query:  RLPVELSSVQSLMPLHSVTASALFTSLLSLHNNSWGCLSE
        R+PVEL+S+QSLMP+HSVTA+ALFTSLLSLHNN WGCLSE
Subjt:  RLPVELSSVQSLMPLHSVTASALFTSLLSLHNNSWGCLSE
W9S1U8 Uncharacterized protein4.0e-1188.1Show/hide
Query:  SFRLPVELSSVQSLMPLHSVTASALFTSLLSLHNNSWGCLSE
        S RLPVEL+S+QSLMPLHSVTASALFTS+LSLHNN WGCLSE
Subjt:  SFRLPVELSSVQSLMPLHSVTASALFTSLLSLHNNSWGCLSE
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G55205.1 unknown protein1.1e-0554.76Show/hide
Query:  SFRLPVELSSVQSLMPLHSVTASALFTSLLSLHNNSWGCLSE
        SFRLPVELS   S++PLHS  ASA   S LS+ + SWG + +
Subjt:  SFRLPVELSSVQSLMPLHSVTASALFTSLLSLHNNSWGCLSE
AT1G55205.2 unknown protein1.1e-0554.76Show/hide
Query:  SFRLPVELSSVQSLMPLHSVTASALFTSLLSLHNNSWGCLSE
        SFRLPVELS   S++PLHS  ASA   S LS+ + SWG + +
Subjt:  SFRLPVELSSVQSLMPLHSVTASALFTSLLSLHNNSWGCLSE
AT1G70350.1 unknown protein1.3e-0975Show/hide
Query:  RLPVELSSVQSLMPLHSVTASALFTSLLSLHNNSWGCLSE
        R+PVELS+  SL+PLHSVTASAL TSLLSL N +W CLSE
Subjt:  RLPVELSSVQSLMPLHSVTASALFTSLLSLHNNSWGCLSE
AT2G20585.1 nuclear fusion defective 62.1e-0458.54Show/hide
Query:  RLPVELS-SVQSLMPLHSVTASALFTSLLSLHNNSWGCLSE
        R PVELS  V+SL+P HS TASAL TS LS+   ++G LS+
Subjt:  RLPVELS-SVQSLMPLHSVTASALFTSLLSLHNNSWGCLSE
AT2G20585.2 nuclear fusion defective 62.1e-0458.54Show/hide
Query:  RLPVELS-SVQSLMPLHSVTASALFTSLLSLHNNSWGCLSE
        R PVELS  V+SL+P HS TASAL TS LS+   ++G LS+
Subjt:  RLPVELS-SVQSLMPLHSVTASALFTSLLSLHNNSWGCLSE

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TATGCGAAATGTGCCTACTCTTTCAGGCTTCCAGTGGAGCTGTCAAGTGTGCAGTCGCTAATGCCACTGCACAGTGTTACTGCTTCTGCCTTATTTACTTCGTTGCTTTC
TTTGCATAACAACAGTTGGGGTTGTCTATCTGAA
mRNA sequenceShow/hide mRNA sequence
TATGCGAAATGTGCCTACTCTTTCAGGCTTCCAGTGGAGCTGTCAAGTGTGCAGTCGCTAATGCCACTGCACAGTGTTACTGCTTCTGCCTTATTTACTTCGTTGCTTTC
TTTGCATAACAACAGTTGGGGTTGTCTATCTGAA
Protein sequenceShow/hide protein sequence
YAKCAYSFRLPVELSSVQSLMPLHSVTASALFTSLLSLHNNSWGCLSE