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MS000885 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS000885
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionprotein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial
Genome locationscaffold36:61836..62024
RNA-Seq ExpressionMS000885
SyntenyMS000885
Gene Ontology termsGO:0030488 - tRNA methylation (biological process)
GO:0070475 - rRNA base methylation (biological process)
GO:0005737 - cytoplasm (cellular component)
GO:0008173 - RNA methyltransferase activity (molecular function)
GO:0046872 - metal ion binding (molecular function)
GO:0051539 - 4 iron, 4 sulfur cluster binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004145570.1 uncharacterized protein LOC101210124 [Cucumis sativus]4.4e-1271.43Show/hide
Query:  MAACCTWKTLRMSSSSTRTLICRSSSSSSASHFVSRPTKPTGLPSAKPAASPRFSVQKLTNLR
        MAACC+WKT+ +SSSS R L+ RSSSS SASHFVS PT   GLPSAKP AS RFSV +LTN R
Subjt:  MAACCTWKTLRMSSSSTRTLICRSSSSSSASHFVSRPTKPTGLPSAKPAASPRFSVQKLTNLR

XP_022159141.1 protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial [Momordica charantia]1.5e-23100Show/hide
Query:  MAACCTWKTLRMSSSSTRTLICRSSSSSSASHFVSRPTKPTGLPSAKPAASPRFSVQKLTNLR
        MAACCTWKTLRMSSSSTRTLICRSSSSSSASHFVSRPTKPTGLPSAKPAASPRFSVQKLTNLR
Subjt:  MAACCTWKTLRMSSSSTRTLICRSSSSSSASHFVSRPTKPTGLPSAKPAASPRFSVQKLTNLR

XP_022996536.1 uncharacterized protein LOC111491756 isoform X2 [Cucurbita maxima]1.5e-1274.6Show/hide
Query:  MAACCTWKTLRMSSSSTRTLICRSSSSSSASHFVSRPTKPTGLPSAKPAASPRFSVQKLTNLR
        MAAC TWKTLR+SSSS RTL+ RSSSS SASH VS+PT    LPSAKP+AS RFSV KLTN R
Subjt:  MAACCTWKTLRMSSSSTRTLICRSSSSSSASHFVSRPTKPTGLPSAKPAASPRFSVQKLTNLR

XP_038885250.1 uncharacterized protein LOC120075707 isoform X1 [Benincasa hispida]4.7e-1478.69Show/hide
Query:  MAACCTWKTLRMSSSSTRTLICRSSSSSSASHFVSRPTKPTGLPSAKPAASPRFSVQKLTN
        MAACC+WKTLR+SSSS RTL+ RSSSS SASHFVS+PT   GLPSAKP AS RF VQKLTN
Subjt:  MAACCTWKTLRMSSSSTRTLICRSSSSSSASHFVSRPTKPTGLPSAKPAASPRFSVQKLTN

XP_038885251.1 protein NUCLEAR FUSION DEFECTIVE 6, mitochondrial isoform X2 [Benincasa hispida]1.2e-1477.78Show/hide
Query:  MAACCTWKTLRMSSSSTRTLICRSSSSSSASHFVSRPTKPTGLPSAKPAASPRFSVQKLTNLR
        MAACC+WKTLR+SSSS RTL+ RSSSS SASHFVS+PT   GLPSAKP AS RF VQKLTN R
Subjt:  MAACCTWKTLRMSSSSTRTLICRSSSSSSASHFVSRPTKPTGLPSAKPAASPRFSVQKLTNLR

TrEMBL top hitse value%identityAlignment
A0A0A0L605 Radical_SAM domain-containing protein2.1e-1271.43Show/hide
Query:  MAACCTWKTLRMSSSSTRTLICRSSSSSSASHFVSRPTKPTGLPSAKPAASPRFSVQKLTNLR
        MAACC+WKT+ +SSSS R L+ RSSSS SASHFVS PT   GLPSAKP AS RFSV +LTN R
Subjt:  MAACCTWKTLRMSSSSTRTLICRSSSSSSASHFVSRPTKPTGLPSAKPAASPRFSVQKLTNLR

A0A5D3D8K9 Dual-specificity RNA methyltransferase RlmN isoform X16.9e-1170.49Show/hide
Query:  MAACCTWKTLRMSSSSTRTLICRSSSSSSASHFVSRPTKPTGLPSAKPAASPRFSVQKLTN
        MAACC+WKT+ +SSSS R L+ R SSS SASHFVS PT   GL SA+PAAS RFSVQ+LTN
Subjt:  MAACCTWKTLRMSSSSTRTLICRSSSSSSASHFVSRPTKPTGLPSAKPAASPRFSVQKLTN

A0A6J1E309 protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial7.1e-24100Show/hide
Query:  MAACCTWKTLRMSSSSTRTLICRSSSSSSASHFVSRPTKPTGLPSAKPAASPRFSVQKLTNLR
        MAACCTWKTLRMSSSSTRTLICRSSSSSSASHFVSRPTKPTGLPSAKPAASPRFSVQKLTNLR
Subjt:  MAACCTWKTLRMSSSSTRTLICRSSSSSSASHFVSRPTKPTGLPSAKPAASPRFSVQKLTNLR

A0A6J1HCT7 protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial1.8e-1173.44Show/hide
Query:  MAACCTWKTLRMSSSSTRTLICRSSSS-SSASHFVSRPTKPTGLPSAKPAASPRFSVQKLTNLR
        MAAC TWKTLR+SSSS RTL+ RSSSS  SASH VS+PT    LPSAKP+AS RFSV KLTN R
Subjt:  MAACCTWKTLRMSSSSTRTLICRSSSS-SSASHFVSRPTKPTGLPSAKPAASPRFSVQKLTNLR

A0A6J1K524 uncharacterized protein LOC111491756 isoform X27.3e-1374.6Show/hide
Query:  MAACCTWKTLRMSSSSTRTLICRSSSSSSASHFVSRPTKPTGLPSAKPAASPRFSVQKLTNLR
        MAAC TWKTLR+SSSS RTL+ RSSSS SASH VS+PT    LPSAKP+AS RFSV KLTN R
Subjt:  MAACCTWKTLRMSSSSTRTLICRSSSSSSASHFVSRPTKPTGLPSAKPAASPRFSVQKLTNLR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGGCTTGCTGTACCTGGAAAACCCTACGAATGTCCTCCTCTTCCACAAGAACTCTCATTTGCCGTTCCTCTTCCTCATCGTCTGCGTCCCATTTTGTGTCCAGACC
CACTAAGCCTACTGGACTTCCTTCTGCTAAGCCGGCAGCATCTCCCCGTTTCTCTGTTCAGAAGCTTACCAACCTCAGG
mRNA sequenceShow/hide mRNA sequence
ATGGCGGCTTGCTGTACCTGGAAAACCCTACGAATGTCCTCCTCTTCCACAAGAACTCTCATTTGCCGTTCCTCTTCCTCATCGTCTGCGTCCCATTTTGTGTCCAGACC
CACTAAGCCTACTGGACTTCCTTCTGCTAAGCCGGCAGCATCTCCCCGTTTCTCTGTTCAGAAGCTTACCAACCTCAGG
Protein sequenceShow/hide protein sequence
MAACCTWKTLRMSSSSTRTLICRSSSSSSASHFVSRPTKPTGLPSAKPAASPRFSVQKLTNLR