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MS000886 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS000886
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionprotein SMG7
Genome locationscaffold36:64592..64785
RNA-Seq ExpressionMS000886
SyntenyMS000886
Gene Ontology termsGO:0000184 - nuclear-transcribed mRNA catabolic process, nonsense-mediated decay (biological process)
GO:0051321 - meiotic cell cycle (biological process)
GO:0005697 - telomerase holoenzyme complex (cellular component)
GO:0042162 - telomeric DNA binding (molecular function)
GO:0070034 - telomerase RNA binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6588223.1 Protein SMG7, partial [Cucurbita argyrosperma subsp. sororia]4.2e-1066.15Show/hide
Query:  NCHSYFQLSKTATNCAVKESPIRFSRKS-KGEVKLASKDSRIELPKKSALSPHEKFKSFCIRNIR
        N  SY QLS  A    VKESPIRFS K  KGEVKLA+KDS  E PK+S LSP E FKSFCIR +R
Subjt:  NCHSYFQLSKTATNCAVKESPIRFSRKS-KGEVKLASKDSRIELPKKSALSPHEKFKSFCIRNIR

KAG7022136.1 Protein SMG7 [Cucurbita argyrosperma subsp. argyrosperma]4.2e-1066.15Show/hide
Query:  NCHSYFQLSKTATNCAVKESPIRFSRKS-KGEVKLASKDSRIELPKKSALSPHEKFKSFCIRNIR
        N  SY QLS  A    VKESPIRFS K  KGEVKLA+KDS  E PK+S LSP E FKSFCIR +R
Subjt:  NCHSYFQLSKTATNCAVKESPIRFSRKS-KGEVKLASKDSRIELPKKSALSPHEKFKSFCIRNIR

XP_022153222.1 protein SMG7 [Momordica charantia]2.6e-1269.23Show/hide
Query:  NCHSYFQLSKTATNCAVKESPIRFSRKS-KGEVKLASKDSRIELPKKSALSPHEKFKSFCIRNIR
        N  SY QLS TA N  VKESP+RFS K  KGEVKLA+KDS  E PK+SALSPHE F+SFCIR +R
Subjt:  NCHSYFQLSKTATNCAVKESPIRFSRKS-KGEVKLASKDSRIELPKKSALSPHEKFKSFCIRNIR

XP_022930346.1 protein SMG7-like [Cucurbita moschata]4.2e-1066.15Show/hide
Query:  NCHSYFQLSKTATNCAVKESPIRFSRKS-KGEVKLASKDSRIELPKKSALSPHEKFKSFCIRNIR
        N  SY QLS  A    VKESPIRFS K  KGEVKLA+KDS  E PK+S LSP E FKSFCIR +R
Subjt:  NCHSYFQLSKTATNCAVKESPIRFSRKS-KGEVKLASKDSRIELPKKSALSPHEKFKSFCIRNIR

XP_023531845.1 protein SMG7-like [Cucurbita pepo subsp. pepo]5.5e-1066.15Show/hide
Query:  NCHSYFQLSKTATNCAVKESPIRFSRKS-KGEVKLASKDSRIELPKKSALSPHEKFKSFCIRNIR
        N  SY QLS  A    VKESPIRFS K  KGEVKLA+KDS  E PK+S LSP E FKSFCIR +R
Subjt:  NCHSYFQLSKTATNCAVKESPIRFSRKS-KGEVKLASKDSRIELPKKSALSPHEKFKSFCIRNIR

TrEMBL top hitse value%identityAlignment
A0A5D3DXN0 Protein SMG75.9e-1064.62Show/hide
Query:  NCHSYFQLSKTATNCAVKESPIRFSRKS-KGEVKLASKDSRIELPKKSALSPHEKFKSFCIRNIR
        N HS+ QLS TA     KESPIRFS K  KGEVKLA+KDS  E PK+SA+SP + FKSFCIR +R
Subjt:  NCHSYFQLSKTATNCAVKESPIRFSRKS-KGEVKLASKDSRIELPKKSALSPHEKFKSFCIRNIR

A0A6J1DIC1 protein SMG71.3e-1269.23Show/hide
Query:  NCHSYFQLSKTATNCAVKESPIRFSRKS-KGEVKLASKDSRIELPKKSALSPHEKFKSFCIRNIR
        N  SY QLS TA N  VKESP+RFS K  KGEVKLA+KDS  E PK+SALSPHE F+SFCIR +R
Subjt:  NCHSYFQLSKTATNCAVKESPIRFSRKS-KGEVKLASKDSRIELPKKSALSPHEKFKSFCIRNIR

A0A6J1EQN9 protein SMG7-like2.0e-1066.15Show/hide
Query:  NCHSYFQLSKTATNCAVKESPIRFSRKS-KGEVKLASKDSRIELPKKSALSPHEKFKSFCIRNIR
        N  SY QLS  A    VKESPIRFS K  KGEVKLA+KDS  E PK+S LSP E FKSFCIR +R
Subjt:  NCHSYFQLSKTATNCAVKESPIRFSRKS-KGEVKLASKDSRIELPKKSALSPHEKFKSFCIRNIR

A0A6J1H8H3 protein SMG7-like3.5e-1064.62Show/hide
Query:  NCHSYFQLSKTATNCAVKESPIRFSRKS-KGEVKLASKDSRIELPKKSALSPHEKFKSFCIRNIR
        N  S+ QLS TA    VKESPIR+S K  KGEVKLA+KDS  E PK+SALSP + FKSFCIR +R
Subjt:  NCHSYFQLSKTATNCAVKESPIRFSRKS-KGEVKLASKDSRIELPKKSALSPHEKFKSFCIRNIR

A0A6J1KLT5 protein SMG7-like4.5e-1064.62Show/hide
Query:  NCHSYFQLSKTATNCAVKESPIRFSRKS-KGEVKLASKDSRIELPKKSALSPHEKFKSFCIRNIR
        N  SY QLS  A    VKE+PIRFS K  KGEVKLA+KDS  E PK+S LSP E FKSFCIR +R
Subjt:  NCHSYFQLSKTATNCAVKESPIRFSRKS-KGEVKLASKDSRIELPKKSALSPHEKFKSFCIRNIR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
AACTGTCATAGTTATTTTCAATTGTCTAAGACTGCTACAAACTGTGCGGTAAAAGAATCACCTATTCGATTTAGCAGAAAAAGTAAAGGAGAAGTAAAACTTGCAAGTAA
AGATTCTAGAATTGAACTCCCAAAGAAGAGTGCATTATCTCCTCATGAGAAATTTAAATCCTTTTGCATTAGAAATATTAGA
mRNA sequenceShow/hide mRNA sequence
AACTGTCATAGTTATTTTCAATTGTCTAAGACTGCTACAAACTGTGCGGTAAAAGAATCACCTATTCGATTTAGCAGAAAAAGTAAAGGAGAAGTAAAACTTGCAAGTAA
AGATTCTAGAATTGAACTCCCAAAGAAGAGTGCATTATCTCCTCATGAGAAATTTAAATCCTTTTGCATTAGAAATATTAGA
Protein sequenceShow/hide protein sequence
NCHSYFQLSKTATNCAVKESPIRFSRKSKGEVKLASKDSRIELPKKSALSPHEKFKSFCIRNIR