; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS000888 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS000888
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionNucleic acid-binding, OB-fold-like protein
Genome locationscaffold36:81732..84519
RNA-Seq ExpressionMS000888
SyntenyMS000888
Gene Ontology termsNA
InterPro domainsIPR012340 - Nucleic acid-binding, OB-fold


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004142984.1 uncharacterized protein At4g28440 [Cucumis sativus]4.7e-6797.06Show/hide
Query:  MAESKPGLRKPVFTKVDQLRPGTSGHTLTVKVVNTKMVLQKGRPDGPQVRQMRIAECLVGDETGMIIFTARNDQVDMMKEGATIILRNAKIDMFKGSMRL
        MAESKPGLRKPVFTKVDQLRPGTSGHTLTVKVVNTKMVLQKGRPDGPQ RQMRIAECLVGDETGMIIFTARNDQVD+MKEGATI LRNAKIDMFKGSMRL
Subjt:  MAESKPGLRKPVFTKVDQLRPGTSGHTLTVKVVNTKMVLQKGRPDGPQVRQMRIAECLVGDETGMIIFTARNDQVDMMKEGATIILRNAKIDMFKGSMRL

Query:  AVDRWGRVEVTEPASFTVKEDNNLSLIEYELVNVVE
        AVDRWGRVEVTEPA+FTVKEDNNLSLIEYELVNVVE
Subjt:  AVDRWGRVEVTEPASFTVKEDNNLSLIEYELVNVVE

XP_022131585.1 uncharacterized protein At4g28440-like [Momordica charantia]8.5e-69100Show/hide
Query:  MAESKPGLRKPVFTKVDQLRPGTSGHTLTVKVVNTKMVLQKGRPDGPQVRQMRIAECLVGDETGMIIFTARNDQVDMMKEGATIILRNAKIDMFKGSMRL
        MAESKPGLRKPVFTKVDQLRPGTSGHTLTVKVVNTKMVLQKGRPDGPQVRQMRIAECLVGDETGMIIFTARNDQVDMMKEGATIILRNAKIDMFKGSMRL
Subjt:  MAESKPGLRKPVFTKVDQLRPGTSGHTLTVKVVNTKMVLQKGRPDGPQVRQMRIAECLVGDETGMIIFTARNDQVDMMKEGATIILRNAKIDMFKGSMRL

Query:  AVDRWGRVEVTEPASFTVKEDNNLSLIEYELVNVVE
        AVDRWGRVEVTEPASFTVKEDNNLSLIEYELVNVVE
Subjt:  AVDRWGRVEVTEPASFTVKEDNNLSLIEYELVNVVE

XP_022951207.1 uncharacterized protein At4g28440-like [Cucurbita moschata]1.6e-6797.79Show/hide
Query:  MAESKPGLRKPVFTKVDQLRPGTSGHTLTVKVVNTKMVLQKGRPDGPQVRQMRIAECLVGDETGMIIFTARNDQVDMMKEGATIILRNAKIDMFKGSMRL
        MAESKPGLRKPVFTKVDQLRPGTSGHTLTVKVVNTKMVLQKGRPDGPQ RQMRIAECLVGDETGMIIFTARNDQVD+MKEGATIILRNAKIDMFKGSMRL
Subjt:  MAESKPGLRKPVFTKVDQLRPGTSGHTLTVKVVNTKMVLQKGRPDGPQVRQMRIAECLVGDETGMIIFTARNDQVDMMKEGATIILRNAKIDMFKGSMRL

Query:  AVDRWGRVEVTEPASFTVKEDNNLSLIEYELVNVVE
        AVDRWGRVEVTEPASFTVKE+NNLSLIEYELVNVVE
Subjt:  AVDRWGRVEVTEPASFTVKEDNNLSLIEYELVNVVE

XP_022961781.1 uncharacterized protein At4g28440-like [Cucurbita moschata]8.8e-6695.59Show/hide
Query:  MAESKPGLRKPVFTKVDQLRPGTSGHTLTVKVVNTKMVLQKGRPDGPQVRQMRIAECLVGDETGMIIFTARNDQVDMMKEGATIILRNAKIDMFKGSMRL
        MAESKPGLRKPVFTKVDQLRPGTSGHTL VKVVN KMVLQKGRPDGPQ RQMRIAECLVGDETGMIIFTARNDQVD+MKEGATI LRNAKIDMFKGSMRL
Subjt:  MAESKPGLRKPVFTKVDQLRPGTSGHTLTVKVVNTKMVLQKGRPDGPQVRQMRIAECLVGDETGMIIFTARNDQVDMMKEGATIILRNAKIDMFKGSMRL

Query:  AVDRWGRVEVTEPASFTVKEDNNLSLIEYELVNVVE
        AVDRWGRVEVTEPA+FTVKEDNNLSLIEYELVNVVE
Subjt:  AVDRWGRVEVTEPASFTVKEDNNLSLIEYELVNVVE

XP_038883981.1 uncharacterized protein At4g28440 [Benincasa hispida]6.1e-6796.32Show/hide
Query:  MAESKPGLRKPVFTKVDQLRPGTSGHTLTVKVVNTKMVLQKGRPDGPQVRQMRIAECLVGDETGMIIFTARNDQVDMMKEGATIILRNAKIDMFKGSMRL
        MAESKPGLRKPVFTK+DQLRPGTSGHTLTVKVVNTKMVLQKGRPDGPQ RQMRIAECLVGDETGMIIFTARNDQVD+MKEGATI LRNAKIDMFKGSMRL
Subjt:  MAESKPGLRKPVFTKVDQLRPGTSGHTLTVKVVNTKMVLQKGRPDGPQVRQMRIAECLVGDETGMIIFTARNDQVDMMKEGATIILRNAKIDMFKGSMRL

Query:  AVDRWGRVEVTEPASFTVKEDNNLSLIEYELVNVVE
        AVDRWGRVEVTEPA+FTVKEDNNLSLIEYELVNVVE
Subjt:  AVDRWGRVEVTEPASFTVKEDNNLSLIEYELVNVVE

TrEMBL top hitse value%identityAlignment
A0A1S3BA24 uncharacterized protein At4g28440 isoform X12.3e-6797.06Show/hide
Query:  MAESKPGLRKPVFTKVDQLRPGTSGHTLTVKVVNTKMVLQKGRPDGPQVRQMRIAECLVGDETGMIIFTARNDQVDMMKEGATIILRNAKIDMFKGSMRL
        MAESKPGLRKPVFTKVDQLRPGTSGHTLTVKVVNTKMVLQKGRPDGPQ RQMRIAECLVGDETGMIIFTARNDQVD+MKEGATI LRNAKIDMFKGSMRL
Subjt:  MAESKPGLRKPVFTKVDQLRPGTSGHTLTVKVVNTKMVLQKGRPDGPQVRQMRIAECLVGDETGMIIFTARNDQVDMMKEGATIILRNAKIDMFKGSMRL

Query:  AVDRWGRVEVTEPASFTVKEDNNLSLIEYELVNVVE
        AVDRWGRVEVTEPA+FTVKEDNNLSLIEYELVNVVE
Subjt:  AVDRWGRVEVTEPASFTVKEDNNLSLIEYELVNVVE

A0A5A7V0K6 Nucleic acid-binding protein2.3e-6797.06Show/hide
Query:  MAESKPGLRKPVFTKVDQLRPGTSGHTLTVKVVNTKMVLQKGRPDGPQVRQMRIAECLVGDETGMIIFTARNDQVDMMKEGATIILRNAKIDMFKGSMRL
        MAESKPGLRKPVFTKVDQLRPGTSGHTLTVKVVNTKMVLQKGRPDGPQ RQMRIAECLVGDETGMIIFTARNDQVD+MKEGATI LRNAKIDMFKGSMRL
Subjt:  MAESKPGLRKPVFTKVDQLRPGTSGHTLTVKVVNTKMVLQKGRPDGPQVRQMRIAECLVGDETGMIIFTARNDQVDMMKEGATIILRNAKIDMFKGSMRL

Query:  AVDRWGRVEVTEPASFTVKEDNNLSLIEYELVNVVE
        AVDRWGRVEVTEPA+FTVKEDNNLSLIEYELVNVVE
Subjt:  AVDRWGRVEVTEPASFTVKEDNNLSLIEYELVNVVE

A0A6J1BQ40 uncharacterized protein At4g28440-like4.1e-69100Show/hide
Query:  MAESKPGLRKPVFTKVDQLRPGTSGHTLTVKVVNTKMVLQKGRPDGPQVRQMRIAECLVGDETGMIIFTARNDQVDMMKEGATIILRNAKIDMFKGSMRL
        MAESKPGLRKPVFTKVDQLRPGTSGHTLTVKVVNTKMVLQKGRPDGPQVRQMRIAECLVGDETGMIIFTARNDQVDMMKEGATIILRNAKIDMFKGSMRL
Subjt:  MAESKPGLRKPVFTKVDQLRPGTSGHTLTVKVVNTKMVLQKGRPDGPQVRQMRIAECLVGDETGMIIFTARNDQVDMMKEGATIILRNAKIDMFKGSMRL

Query:  AVDRWGRVEVTEPASFTVKEDNNLSLIEYELVNVVE
        AVDRWGRVEVTEPASFTVKEDNNLSLIEYELVNVVE
Subjt:  AVDRWGRVEVTEPASFTVKEDNNLSLIEYELVNVVE

A0A6J1GH14 uncharacterized protein At4g28440-like7.8e-6897.79Show/hide
Query:  MAESKPGLRKPVFTKVDQLRPGTSGHTLTVKVVNTKMVLQKGRPDGPQVRQMRIAECLVGDETGMIIFTARNDQVDMMKEGATIILRNAKIDMFKGSMRL
        MAESKPGLRKPVFTKVDQLRPGTSGHTLTVKVVNTKMVLQKGRPDGPQ RQMRIAECLVGDETGMIIFTARNDQVD+MKEGATIILRNAKIDMFKGSMRL
Subjt:  MAESKPGLRKPVFTKVDQLRPGTSGHTLTVKVVNTKMVLQKGRPDGPQVRQMRIAECLVGDETGMIIFTARNDQVDMMKEGATIILRNAKIDMFKGSMRL

Query:  AVDRWGRVEVTEPASFTVKEDNNLSLIEYELVNVVE
        AVDRWGRVEVTEPASFTVKE+NNLSLIEYELVNVVE
Subjt:  AVDRWGRVEVTEPASFTVKEDNNLSLIEYELVNVVE

A0A6J1KS21 uncharacterized protein At4g28440-like7.8e-6897.79Show/hide
Query:  MAESKPGLRKPVFTKVDQLRPGTSGHTLTVKVVNTKMVLQKGRPDGPQVRQMRIAECLVGDETGMIIFTARNDQVDMMKEGATIILRNAKIDMFKGSMRL
        MAESKPGLRKPVFTKVDQLRPGTSGHTLTVKVVNTKMVLQKGRPDGPQ RQMRIAECLVGDETGMIIFTARNDQVD+MKEGATIILRNAKIDMFKGSMRL
Subjt:  MAESKPGLRKPVFTKVDQLRPGTSGHTLTVKVVNTKMVLQKGRPDGPQVRQMRIAECLVGDETGMIIFTARNDQVDMMKEGATIILRNAKIDMFKGSMRL

Query:  AVDRWGRVEVTEPASFTVKEDNNLSLIEYELVNVVE
        AVDRWGRVEVTEPASFTVKE+NNLSLIEYELVNVVE
Subjt:  AVDRWGRVEVTEPASFTVKEDNNLSLIEYELVNVVE

SwissProt top hitse value%identityAlignment
O49453 Uncharacterized protein At4g284402.6e-4467.42Show/hide
Query:  RKPVFTKVDQLRPGTSGHTLTVKVVNTKMVL---QKGRPDGPQVR---QMRIAECLVGDETGMIIFTARNDQVDMMKEGATIILRNAKIDMFKGSMRLAV
        RKPVF KV+QL+PGT+GHTLTVKV+   +V+   +K RP     R     RI ECL+GDETG I+FTARNDQVD+MK GAT+ILRN++IDMFKG+MRL V
Subjt:  RKPVFTKVDQLRPGTSGHTLTVKVVNTKMVL---QKGRPDGPQVR---QMRIAECLVGDETGMIIFTARNDQVDMMKEGATIILRNAKIDMFKGSMRLAV

Query:  DRWGRVEVTEPASFTVKEDNNLSLIEYELVNV
        D+WGR+E T  ASFTVKEDNNLSL+EYEL+NV
Subjt:  DRWGRVEVTEPASFTVKEDNNLSLIEYELVNV

Arabidopsis top hitse value%identityAlignment
AT1G10590.1 Nucleic acid-binding, OB-fold-like protein5.2e-5679.56Show/hide
Query:  MAESKPGLRKPVFTKVDQLRPGTSGHTLTVKVVNTKMVLQK--GRPDGPQVRQMRIAECLVGDETGMIIFTARNDQVDMMKEGATIILRNAKIDMFKGSM
        MAE+   LRKPVFTKV++LRPGT+GH+L VKVVNTKMV+Q+  GRP GPQ RQMRIAECLVGDETG+IIFTARNDQVDMMKEG+ + LRNAKIDM+KGSM
Subjt:  MAESKPGLRKPVFTKVDQLRPGTSGHTLTVKVVNTKMVLQK--GRPDGPQVRQMRIAECLVGDETGMIIFTARNDQVDMMKEGATIILRNAKIDMFKGSM

Query:  RLAVDRWGRVEVT-EPASFTVKEDNNLSLIEYELVNV
        RLAVDRWGRVEV  EP   TVK+DNNLSLIEYELV+V
Subjt:  RLAVDRWGRVEVT-EPASFTVKEDNNLSLIEYELVNV

AT1G10590.2 Nucleic acid-binding, OB-fold-like protein5.2e-5679.56Show/hide
Query:  MAESKPGLRKPVFTKVDQLRPGTSGHTLTVKVVNTKMVLQK--GRPDGPQVRQMRIAECLVGDETGMIIFTARNDQVDMMKEGATIILRNAKIDMFKGSM
        MAE+   LRKPVFTKV++LRPGT+GH+L VKVVNTKMV+Q+  GRP GPQ RQMRIAECLVGDETG+IIFTARNDQVDMMKEG+ + LRNAKIDM+KGSM
Subjt:  MAESKPGLRKPVFTKVDQLRPGTSGHTLTVKVVNTKMVLQK--GRPDGPQVRQMRIAECLVGDETGMIIFTARNDQVDMMKEGATIILRNAKIDMFKGSM

Query:  RLAVDRWGRVEVT-EPASFTVKEDNNLSLIEYELVNV
        RLAVDRWGRVEV  EP   TVK+DNNLSLIEYELV+V
Subjt:  RLAVDRWGRVEVT-EPASFTVKEDNNLSLIEYELVNV

AT1G10590.3 Nucleic acid-binding, OB-fold-like protein4.0e-5678.99Show/hide
Query:  EMAESKPGLRKPVFTKVDQLRPGTSGHTLTVKVVNTKMVLQK--GRPDGPQVRQMRIAECLVGDETGMIIFTARNDQVDMMKEGATIILRNAKIDMFKGS
        +MAE+   LRKPVFTKV++LRPGT+GH+L VKVVNTKMV+Q+  GRP GPQ RQMRIAECLVGDETG+IIFTARNDQVDMMKEG+ + LRNAKIDM+KGS
Subjt:  EMAESKPGLRKPVFTKVDQLRPGTSGHTLTVKVVNTKMVLQK--GRPDGPQVRQMRIAECLVGDETGMIIFTARNDQVDMMKEGATIILRNAKIDMFKGS

Query:  MRLAVDRWGRVEVT-EPASFTVKEDNNLSLIEYELVNV
        MRLAVDRWGRVEV  EP   TVK+DNNLSLIEYELV+V
Subjt:  MRLAVDRWGRVEVT-EPASFTVKEDNNLSLIEYELVNV

AT1G23750.1 Nucleic acid-binding, OB-fold-like protein1.6e-6081.02Show/hide
Query:  MAES-KPGLRKPVFTKVDQLRPGTSGHTLTVKVVNTKMVLQKGRPDGPQVRQMRIAECLVGDETGMIIFTARNDQVDMMKEGATIILRNAKIDMFKGSMR
        MA+S K GL+KP FTKVDQLRPGTSGH + VK+V+TKMVLQKGR DGPQ RQ+RI+EC+VGDETG+I+FTARNDQVD+MKEG+T+ LRNAKIDM+KGSMR
Subjt:  MAES-KPGLRKPVFTKVDQLRPGTSGHTLTVKVVNTKMVLQKGRPDGPQVRQMRIAECLVGDETGMIIFTARNDQVDMMKEGATIILRNAKIDMFKGSMR

Query:  LAVDRWGRVEVTEPASFTVKEDNNLSLIEYELVNVVE
        LAVD+WGRVEVTEPASF VKED N+SLIEYELVNVVE
Subjt:  LAVDRWGRVEVTEPASFTVKEDNNLSLIEYELVNVVE

AT2G33845.1 Nucleic acid-binding, OB-fold-like protein2.8e-4974.42Show/hide
Query:  RKPVFTKVDQLRPGTSGHTLTVKVVNTKMVLQK-GRPDGPQVRQMRIAECLVGDETGMIIFTARNDQVDMMKEGATIILRNAKIDMFKGSMRLAVDRWGR
        +KPVF KVDQL+PGTSGHTLTVKVV+   V QK G      +R  RI+ECLVGDET  I+FTARNDQV++MK GAT+ LRNAKIDMFKGSMRLAVD+WGR
Subjt:  RKPVFTKVDQLRPGTSGHTLTVKVVNTKMVLQK-GRPDGPQVRQMRIAECLVGDETGMIIFTARNDQVDMMKEGATIILRNAKIDMFKGSMRLAVDRWGR

Query:  VEVTEPASFTVKEDNNLSLIEYELVNVVE
        +E TEPA  TVKEDNNLSL+EYELVNVVE
Subjt:  VEVTEPASFTVKEDNNLSLIEYELVNVVE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GAAATGGCAGAATCAAAACCTGGACTGAGGAAACCGGTATTTACCAAGGTTGACCAACTTCGGCCTGGCACCAGTGGGCATACTCTTACAGTGAAGGTTGTGAATACTAA
GATGGTATTACAGAAGGGTCGCCCTGATGGTCCTCAAGTCCGTCAGATGCGAATTGCTGAATGCTTGGTGGGTGATGAGACTGGAATGATCATATTTACTGCCAGAAATG
ATCAAGTGGACATGATGAAAGAAGGTGCTACCATTATTCTGCGCAATGCTAAGATAGACATGTTTAAAGGATCAATGAGACTTGCTGTGGATAGGTGGGGCCGAGTTGAA
GTTACTGAGCCTGCCAGTTTTACTGTTAAAGAAGATAACAATCTTTCACTCATTGAATATGAACTTGTGAATGTGGTGGAA
mRNA sequenceShow/hide mRNA sequence
GAAATGGCAGAATCAAAACCTGGACTGAGGAAACCGGTATTTACCAAGGTTGACCAACTTCGGCCTGGCACCAGTGGGCATACTCTTACAGTGAAGGTTGTGAATACTAA
GATGGTATTACAGAAGGGTCGCCCTGATGGTCCTCAAGTCCGTCAGATGCGAATTGCTGAATGCTTGGTGGGTGATGAGACTGGAATGATCATATTTACTGCCAGAAATG
ATCAAGTGGACATGATGAAAGAAGGTGCTACCATTATTCTGCGCAATGCTAAGATAGACATGTTTAAAGGATCAATGAGACTTGCTGTGGATAGGTGGGGCCGAGTTGAA
GTTACTGAGCCTGCCAGTTTTACTGTTAAAGAAGATAACAATCTTTCACTCATTGAATATGAACTTGTGAATGTGGTGGAA
Protein sequenceShow/hide protein sequence
EMAESKPGLRKPVFTKVDQLRPGTSGHTLTVKVVNTKMVLQKGRPDGPQVRQMRIAECLVGDETGMIIFTARNDQVDMMKEGATIILRNAKIDMFKGSMRLAVDRWGRVE
VTEPASFTVKEDNNLSLIEYELVNVVE