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MS000889 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS000889
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionAMSH-like ubiquitin thioesterase 2 isoform X1
Genome locationscaffold36:88771..88942
RNA-Seq ExpressionMS000889
SyntenyMS000889
Gene Ontology termsGO:0070536 - protein K63-linked deubiquitination (biological process)
GO:0008237 - metallopeptidase activity (molecular function)
GO:0061578 - Lys63-specific deubiquitinase activity (molecular function)
GO:0070122 - isopeptidase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6598210.1 AMSH-like ubiquitin thioesterase 2, partial [Cucurbita argyrosperma subsp. sororia]4.0e-2086.21Show/hide
Query:  RSFGIFRLSDPGGMRSLRE-EKDGFHPNRDPEDGSPIYELCSTVYQNSNLRFEIIDLR
        RSFGIFRLSDPGGM+ LRE ++DGFHP++DPEDGSPIYELCS VYQNSNLRFEIIDLR
Subjt:  RSFGIFRLSDPGGMRSLRE-EKDGFHPNRDPEDGSPIYELCSTVYQNSNLRFEIIDLR

XP_023545741.1 AMSH-like ubiquitin thioesterase 2 isoform X3 [Cucurbita pepo subsp. pepo]4.0e-2086.21Show/hide
Query:  RSFGIFRLSDPGGMRSLRE-EKDGFHPNRDPEDGSPIYELCSTVYQNSNLRFEIIDLR
        RSFGIFRLSDPGGM+ LRE ++DGFHP++DPEDGSPIYELCS VYQNSNLRFEIIDLR
Subjt:  RSFGIFRLSDPGGMRSLRE-EKDGFHPNRDPEDGSPIYELCSTVYQNSNLRFEIIDLR

XP_023545742.1 AMSH-like ubiquitin thioesterase 2 isoform X4 [Cucurbita pepo subsp. pepo]4.0e-2086.21Show/hide
Query:  RSFGIFRLSDPGGMRSLRE-EKDGFHPNRDPEDGSPIYELCSTVYQNSNLRFEIIDLR
        RSFGIFRLSDPGGM+ LRE ++DGFHP++DPEDGSPIYELCS VYQNSNLRFEIIDLR
Subjt:  RSFGIFRLSDPGGMRSLRE-EKDGFHPNRDPEDGSPIYELCSTVYQNSNLRFEIIDLR

XP_023545743.1 AMSH-like ubiquitin thioesterase 2 isoform X5 [Cucurbita pepo subsp. pepo]4.0e-2086.21Show/hide
Query:  RSFGIFRLSDPGGMRSLRE-EKDGFHPNRDPEDGSPIYELCSTVYQNSNLRFEIIDLR
        RSFGIFRLSDPGGM+ LRE ++DGFHP++DPEDGSPIYELCS VYQNSNLRFEIIDLR
Subjt:  RSFGIFRLSDPGGMRSLRE-EKDGFHPNRDPEDGSPIYELCSTVYQNSNLRFEIIDLR

XP_023545750.1 AMSH-like ubiquitin thioesterase 2 isoform X9 [Cucurbita pepo subsp. pepo]4.0e-2086.21Show/hide
Query:  RSFGIFRLSDPGGMRSLRE-EKDGFHPNRDPEDGSPIYELCSTVYQNSNLRFEIIDLR
        RSFGIFRLSDPGGM+ LRE ++DGFHP++DPEDGSPIYELCS VYQNSNLRFEIIDLR
Subjt:  RSFGIFRLSDPGGMRSLRE-EKDGFHPNRDPEDGSPIYELCSTVYQNSNLRFEIIDLR

TrEMBL top hitse value%identityAlignment
A0A6J1BPX0 LOW QUALITY PROTEIN: AMSH-like ubiquitin thioesterase 29.6e-2089.47Show/hide
Query:  RSFGIFRLSDPGGMRSLREEKDGFHPNRDPEDGSPIYELCSTVYQNSNLRFEIIDLR
        RSFGIFRLSDPGG      EKDGFHPNRDPEDGSPIYELCSTVYQNSNLRFEIIDLR
Subjt:  RSFGIFRLSDPGGMRSLREEKDGFHPNRDPEDGSPIYELCSTVYQNSNLRFEIIDLR

A0A6J1HBA2 AMSH-like ubiquitin thioesterase 2 isoform X31.2e-1984.48Show/hide
Query:  RSFGIFRLSDPGGMRSLRE-EKDGFHPNRDPEDGSPIYELCSTVYQNSNLRFEIIDLR
        RSFGIFRLSDPGGM+ LRE ++DGFHP++ PEDGSPIYELCS VYQNSNLRFEIIDLR
Subjt:  RSFGIFRLSDPGGMRSLRE-EKDGFHPNRDPEDGSPIYELCSTVYQNSNLRFEIIDLR

A0A6J1HCT2 AMSH-like ubiquitin thioesterase 2 isoform X41.2e-1984.48Show/hide
Query:  RSFGIFRLSDPGGMRSLRE-EKDGFHPNRDPEDGSPIYELCSTVYQNSNLRFEIIDLR
        RSFGIFRLSDPGGM+ LRE ++DGFHP++ PEDGSPIYELCS VYQNSNLRFEIIDLR
Subjt:  RSFGIFRLSDPGGMRSLRE-EKDGFHPNRDPEDGSPIYELCSTVYQNSNLRFEIIDLR

A0A6J1HD81 AMSH-like ubiquitin thioesterase 2 isoform X21.2e-1984.48Show/hide
Query:  RSFGIFRLSDPGGMRSLRE-EKDGFHPNRDPEDGSPIYELCSTVYQNSNLRFEIIDLR
        RSFGIFRLSDPGGM+ LRE ++DGFHP++ PEDGSPIYELCS VYQNSNLRFEIIDLR
Subjt:  RSFGIFRLSDPGGMRSLRE-EKDGFHPNRDPEDGSPIYELCSTVYQNSNLRFEIIDLR

A0A6J1HF06 AMSH-like ubiquitin thioesterase 2 isoform X11.2e-1984.48Show/hide
Query:  RSFGIFRLSDPGGMRSLRE-EKDGFHPNRDPEDGSPIYELCSTVYQNSNLRFEIIDLR
        RSFGIFRLSDPGGM+ LRE ++DGFHP++ PEDGSPIYELCS VYQNSNLRFEIIDLR
Subjt:  RSFGIFRLSDPGGMRSLRE-EKDGFHPNRDPEDGSPIYELCSTVYQNSNLRFEIIDLR

SwissProt top hitse value%identityAlignment
Q5PNU3 AMSH-like ubiquitin thioesterase 36.0e-1152.73Show/hide
Query:  GIFRLSDPGGMRSLRE-EKDGFHPNRDPEDGSPIYELCSTVYQNSNLRFEIIDLR
        GIF LSDP G+  +R  ++ GFHP+ + EDG+PIYE CS V+ N+ L++E++DLR
Subjt:  GIFRLSDPGGMRSLRE-EKDGFHPNRDPEDGSPIYELCSTVYQNSNLRFEIIDLR

Q6NKP9 AMSH-like ubiquitin thioesterase 27.3e-1765.52Show/hide
Query:  RSFGIFRLSDPGGMRSLRE-EKDGFHPNRDPEDGSPIYELCSTVYQNSNLRFEIIDLR
        +S+GIF+L+DPGGM  LR   + GFHP+++PEDG+P+YE CS VY+NSNLRFEI DLR
Subjt:  RSFGIFRLSDPGGMRSLRE-EKDGFHPNRDPEDGSPIYELCSTVYQNSNLRFEIIDLR

Q8VYB5 AMSH-like ubiquitin thioesterase 11.4e-1255.17Show/hide
Query:  RSFGIFRLSDPGGMRSLRE-EKDGFHPNRDPEDGSPIYELCSTVYQNSNLRFEIIDLR
        R+ GIFRL+ PGGM  +R  ++ GFH +  PEDG PIY  C  VY N NL+F++IDLR
Subjt:  RSFGIFRLSDPGGMRSLRE-EKDGFHPNRDPEDGSPIYELCSTVYQNSNLRFEIIDLR

Arabidopsis top hitse value%identityAlignment
AT1G10600.1 associated molecule with the SH3 domain of STAM 25.2e-1865.52Show/hide
Query:  RSFGIFRLSDPGGMRSLRE-EKDGFHPNRDPEDGSPIYELCSTVYQNSNLRFEIIDLR
        +S+GIF+L+DPGGM  LR   + GFHP+++PEDG+P+YE CS VY+NSNLRFEI DLR
Subjt:  RSFGIFRLSDPGGMRSLRE-EKDGFHPNRDPEDGSPIYELCSTVYQNSNLRFEIIDLR

AT1G10600.2 associated molecule with the SH3 domain of STAM 25.2e-1865.52Show/hide
Query:  RSFGIFRLSDPGGMRSLRE-EKDGFHPNRDPEDGSPIYELCSTVYQNSNLRFEIIDLR
        +S+GIF+L+DPGGM  LR   + GFHP+++PEDG+P+YE CS VY+NSNLRFEI DLR
Subjt:  RSFGIFRLSDPGGMRSLRE-EKDGFHPNRDPEDGSPIYELCSTVYQNSNLRFEIIDLR

AT1G10600.3 associated molecule with the SH3 domain of STAM 22.0e-1764.91Show/hide
Query:  SFGIFRLSDPGGMRSLRE-EKDGFHPNRDPEDGSPIYELCSTVYQNSNLRFEIIDLR
        ++GIF+L+DPGGM  LR   + GFHP+++PEDG+P+YE CS VY+NSNLRFEI DLR
Subjt:  SFGIFRLSDPGGMRSLRE-EKDGFHPNRDPEDGSPIYELCSTVYQNSNLRFEIIDLR

AT1G48790.1 associated molecule with the SH3 domain of STAM 11.0e-1355.17Show/hide
Query:  RSFGIFRLSDPGGMRSLRE-EKDGFHPNRDPEDGSPIYELCSTVYQNSNLRFEIIDLR
        R+ GIFRL+ PGGM  +R  ++ GFH +  PEDG PIY  C  VY N NL+F++IDLR
Subjt:  RSFGIFRLSDPGGMRSLRE-EKDGFHPNRDPEDGSPIYELCSTVYQNSNLRFEIIDLR

AT4G16144.1 associated molecule with the SH3 domain of STAM 34.3e-1252.73Show/hide
Query:  GIFRLSDPGGMRSLRE-EKDGFHPNRDPEDGSPIYELCSTVYQNSNLRFEIIDLR
        GIF LSDP G+  +R  ++ GFHP+ + EDG+PIYE CS V+ N+ L++E++DLR
Subjt:  GIFRLSDPGGMRSLRE-EKDGFHPNRDPEDGSPIYELCSTVYQNSNLRFEIIDLR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
AGGAGCTTTGGAATATTTCGACTGAGTGATCCGGGTGGGATGAGGAGTCTGAGAGAGGAAAAGGATGGTTTTCACCCTAACAGAGATCCGGAAGATGGTAGCCCCATTTA
CGAGCTCTGCTCTACTGTCTACCAAAATTCCAACTTGAGATTCGAAATCATTGACTTGCGT
mRNA sequenceShow/hide mRNA sequence
AGGAGCTTTGGAATATTTCGACTGAGTGATCCGGGTGGGATGAGGAGTCTGAGAGAGGAAAAGGATGGTTTTCACCCTAACAGAGATCCGGAAGATGGTAGCCCCATTTA
CGAGCTCTGCTCTACTGTCTACCAAAATTCCAACTTGAGATTCGAAATCATTGACTTGCGT
Protein sequenceShow/hide protein sequence
RSFGIFRLSDPGGMRSLREEKDGFHPNRDPEDGSPIYELCSTVYQNSNLRFEIIDLR