CuGenDBv2

Gene ID	MS000901
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	DNA-directed RNA polymerases I, II, and III subunit RPABC5
Genome location	scaffold36:162099..162694
RNA-Seq Expression	MS000901
Synteny	MS000901
Gene Ontology terms	GO:0006360 - transcription by RNA polymerase I (biological process) GO:0006366 - transcription by RNA polymerase II (biological process) GO:0042797 - tRNA transcription by RNA polymerase III (biological process) GO:0005665 - RNA polymerase II, core complex (cellular component) GO:0005666 - RNA polymerase III complex (cellular component) GO:0005736 - RNA polymerase I complex (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0003677 - DNA binding (molecular function) GO:0003899 - DNA-directed 5'-3' RNA polymerase activity (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	IPR000268 - DNA-directed RNA polymerase, subunit N/Rpb10 IPR020789 - RNA polymerases, subunit N, zinc binding site IPR023580 - RNA polymerase subunit RPB10

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0057130.1 DNA-directed RNA polymerases I, II, and III subunit RPABC5 [Cucumis melo var. makuwa]

1.2e-31

95.77

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Query:  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNSNFSLFLY
        MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNSN SL L+
Subjt:  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNSNFSLFLY

KAB5564305.1 hypothetical protein DKX38_004359 [Salix brachista]

1.5e-31

95.71

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Query:  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNSNFSLFL
        MIIPVRCFTCGKVIGNKWD YLDLLQADY+EGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNSNFS FL
Subjt:  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNSNFSLFL

KAF9685616.1 hypothetical protein SADUNF_Sadunf03G0073100 [Salix dunnii]

4.5e-31

97.06

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Query:  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNSNFSL
        MIIPVRCFTCGKVIGNKWD YLDLLQADY+EGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNSNFSL
Subjt:  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNSNFSL

KAF9825663.1 hypothetical protein H0E87_032116, partial [Populus deltoides]

1.2e-31

97.1

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Query:  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNSNFSLF
        MIIPVRCFTCGKVIGNKWD YLDLLQADY+EGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNSNFSLF
Subjt:  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNSNFSLF

KAG6782578.1 hypothetical protein POTOM_011988 [Populus tomentosa]

1.2e-31

97.1

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Query:  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNSNFSLF
        MIIPVRCFTCGKVIGNKWD YLDLLQADY+EGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNSNFSLF
Subjt:  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNSNFSLF

TrEMBL top hits

e value

%identity

Alignment

A0A446NTG8 Uncharacterized protein

6.3e-31

92.75

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Query:  GQKAKMIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNS
        G  +KMIIPVRCFTCGKVIGNKWDHYLDLLQADY+EGDALDALGLVRYCCRRMLMTHVDLIEKLLNYN+
Subjt:  GQKAKMIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNS

A0A453FTM1 Uncharacterized protein

1.7e-31

91.55

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Query:  GLGQKAKMIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNS
        G G+ +KMIIPVRCFTCGKVIGNKWDHYLDLLQADY+EGDALDALGLVRYCCRRMLMTHVDLIEKLLNYN+
Subjt:  GLGQKAKMIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNS

A0A5A7UPU3 DNA-directed RNA polymerases I, II, and III subunit RPABC5

5.7e-32

95.77

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Query:  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNSNFSLFLY
        MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNSN SL L+
Subjt:  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNSNFSLFLY

A0A5N5N9W5 Uncharacterized protein

7.5e-32

95.71

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Query:  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNSNFSLFL
        MIIPVRCFTCGKVIGNKWD YLDLLQADY+EGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNSNFS FL
Subjt:  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNSNFSLFL

M8D4I9 DNA-directed RNA polymerases I, II, and III subunit RPABC5

2.2e-31

92.86

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Query:  GLGQKAKMIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYN
        G G+ +KMIIPVRCFTCGKVIGNKWDHYLDLLQADY+EGDALDALGLVRYCCRRMLMTHVDLIEKLLNYN
Subjt:  GLGQKAKMIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYN

SwissProt top hits

e value

%identity

Alignment

Q32P78 DNA-directed RNA polymerases I, II, and III subunit RPABC5

7.0e-27

83.87

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Query:  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLLNY
        MIIPVRCFTCGK++GNKW+ YL LLQA+Y+EGDALDALGL RYCCRRML+ HVDLIEKLLNY
Subjt:  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLLNY

Q39290 DNA-directed RNA polymerases I, II, and III subunit RPABC5

3.9e-30

92.19

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Query:  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNS
        MIIPVRCFTCGKVIGNKWD YLDLLQ DY+EGDALDAL LVRYCCRRMLMTHVDLIEKLLNYN+
Subjt:  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNS

Q55AB6 DNA-directed RNA polymerases I, II, and III subunit rpabc5

4.1e-27

88.71

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Query:  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLLNY
        MIIPVRCFTCGKVIGNKWD YL LLQ DY+EGDALDAL L RYCCRRML+THVDLIEKLLNY
Subjt:  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLLNY

Q8LFJ6 DNA-directed RNA polymerases II, IV and V subunit 10

3.9e-30

92.19

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Query:  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNS
        MIIPVRCFTCGKVIGNKWD YLDLLQ DY+EGDALDAL LVRYCCRRMLMTHVDLIEKLLNYN+
Subjt:  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNS

Q9SYA6 DNA-directed RNA polymerase subunit 10-like protein

7.9e-31

92.19

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Query:  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNS
        MI+PVRCFTCGKVIGNKWD YL+LLQADY+EGDALDALGLVRYCCRRMLMTHVDLIEKLLNYN+
Subjt:  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNS

Arabidopsis top hits

e value

%identity

Alignment

AT1G11475.1 RNA polymerases N / 8 kDa subunit

2.8e-31

92.19

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Query:  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNS
        MIIPVRCFTCGKVIGNKWD YLDLLQ DY+EGDALDAL LVRYCCRRMLMTHVDLIEKLLNYN+
Subjt:  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNS

AT1G61700.1 RNA polymerases N / 8 kDa subunit

5.6e-32

92.19

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Query:  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNS
        MI+PVRCFTCGKVIGNKWD YL+LLQADY+EGDALDALGLVRYCCRRMLMTHVDLIEKLLNYN+
Subjt:  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNS

Sequences

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CDS sequence

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AGGCAGCGTCGGAACCCCGGGCTAGGGCAGAAAGCGAAGATGATCATCCCAGTACGTTGCTTCACTTGCGGAAAGGTGATTGGAAACAAATGGGATCATTACCTTGATCT
TCTACAGGCAGACTATTCTGAAGGAGATGCTCTCGATGCACTGGGCTTGGTTCGCTACTGCTGTAGGCGAATGCTCATGACTCATGTAGACCTTATCGAAAAGCTTCTTA
ATTACAACAGTAATTTCTCTCTCTTTCTCTACATTCATGCA

mRNA sequence

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Protein sequence

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RQRRNPGLGQKAKMIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNSNFSLFLYIHA

MS000901 (gene) of Bitter gourd (TR) v1 genome