; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS000961 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS000961
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionprotein Iojap-related, mitochondrial
Genome locationscaffold36:483353..484432
RNA-Seq ExpressionMS000961
SyntenyMS000961
Gene Ontology termsGO:0017148 - negative regulation of translation (biological process)
GO:0090071 - negative regulation of ribosome biogenesis (biological process)
GO:0043023 - ribosomal large subunit binding (molecular function)
InterPro domainsIPR004394 - Protein Iojap/ribosomal silencing factor RsfS
IPR043519 - Nucleotidyltransferase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7029243.1 3-oxoacyl-[acyl-carrier-protein] reductase, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma]1.7e-7183.43Show/hide
Query:  MLVAQRIRSSSAFSSTIRSLQQWNKGIFVHNHTVSSSTASSSNNGLLDLQEVETVLNNVKADDVKVIPIRKDCDWADYMVFATGRSTWHVKNIAQALIYK
        ML AQRIRSSSA SSTIR LQ WN+G+ V NHT+SSSTASS   GLLDLQEVET+LNNVKADDV+VIP+RKDCDWADYMVFATGRSTWHVKNIAQALIYK
Subjt:  MLVAQRIRSSSAFSSTIRSLQQWNKGIFVHNHTVSSSTASSSNNGLLDLQEVETVLNNVKADDVKVIPIRKDCDWADYMVFATGRSTWHVKNIAQALIYK

Query:  AGCFYISIKQKQKGARQLILPSVEGQEDGKWIVIDSGKVVVHALDENARTYYNLESLWSTETAPDDSSQ
               +KQKQKGARQL+LPSVEGQEDGKWIVIDSGKVVVHALDENARTYYNLESLWS +T  DDSSQ
Subjt:  AGCFYISIKQKQKGARQLILPSVEGQEDGKWIVIDSGKVVVHALDENARTYYNLESLWSTETAPDDSSQ

XP_022131306.1 protein Iojap-related, mitochondrial [Momordica charantia]2.9e-8295.86Show/hide
Query:  MLVAQRIRSSSAFSSTIRSLQQWNKGIFVHNHTVSSSTASSSNNGLLDLQEVETVLNNVKADDVKVIPIRKDCDWADYMVFATGRSTWHVKNIAQALIYK
        MLVAQRIRSSSAFSSTIRSLQQWNKGIFVHNHTVSSSTASSSNNGLLDLQEVETVLNNVKADDVKVIPIRKDCDWADYMVFATGRSTWHVKNIAQALIYK
Subjt:  MLVAQRIRSSSAFSSTIRSLQQWNKGIFVHNHTVSSSTASSSNNGLLDLQEVETVLNNVKADDVKVIPIRKDCDWADYMVFATGRSTWHVKNIAQALIYK

Query:  AGCFYISIKQKQKGARQLILPSVEGQEDGKWIVIDSGKVVVHALDENARTYYNLESLWSTETAPDDSSQ
               IKQKQKGARQLILPSVEGQEDGKWIVIDSGKVVVHALDENARTYYNLESLWSTETAPDDSSQ
Subjt:  AGCFYISIKQKQKGARQLILPSVEGQEDGKWIVIDSGKVVVHALDENARTYYNLESLWSTETAPDDSSQ

XP_022961631.1 protein Iojap-related, mitochondrial [Cucurbita moschata]1.0e-7183.43Show/hide
Query:  MLVAQRIRSSSAFSSTIRSLQQWNKGIFVHNHTVSSSTASSSNNGLLDLQEVETVLNNVKADDVKVIPIRKDCDWADYMVFATGRSTWHVKNIAQALIYK
        ML AQRIRSSSA SSTIR LQ WN+G+ V NHT+SSSTASS   GLLDLQEVET+LNNVKADDV+VIP+RKDCDWADYMVFATGRSTWHVKNIAQALIYK
Subjt:  MLVAQRIRSSSAFSSTIRSLQQWNKGIFVHNHTVSSSTASSSNNGLLDLQEVETVLNNVKADDVKVIPIRKDCDWADYMVFATGRSTWHVKNIAQALIYK

Query:  AGCFYISIKQKQKGARQLILPSVEGQEDGKWIVIDSGKVVVHALDENARTYYNLESLWSTETAPDDSSQ
               +KQKQKGARQL+LPSVEGQEDGKWIVIDSGKVVVHALDENARTYYNLESLWS +T  DDSSQ
Subjt:  AGCFYISIKQKQKGARQLILPSVEGQEDGKWIVIDSGKVVVHALDENARTYYNLESLWSTETAPDDSSQ

XP_022997359.1 protein Iojap-related, mitochondrial [Cucurbita maxima]2.7e-7284.02Show/hide
Query:  MLVAQRIRSSSAFSSTIRSLQQWNKGIFVHNHTVSSSTASSSNNGLLDLQEVETVLNNVKADDVKVIPIRKDCDWADYMVFATGRSTWHVKNIAQALIYK
        ML AQRIRSSSA SSTIR LQ WN+G+ V NHT+SSSTASS N GLLDLQEVET+LNNVKADDV+VIP+RKDCDWADYMVFATGRSTWHVKNIAQALIYK
Subjt:  MLVAQRIRSSSAFSSTIRSLQQWNKGIFVHNHTVSSSTASSSNNGLLDLQEVETVLNNVKADDVKVIPIRKDCDWADYMVFATGRSTWHVKNIAQALIYK

Query:  AGCFYISIKQKQKGARQLILPSVEGQEDGKWIVIDSGKVVVHALDENARTYYNLESLWSTETAPDDSSQ
               +KQKQKGARQL+LPSVEGQEDGKWIVIDSGKVVVHALDE ARTYYNLESLWST+T  DDSSQ
Subjt:  AGCFYISIKQKQKGARQLILPSVEGQEDGKWIVIDSGKVVVHALDENARTYYNLESLWSTETAPDDSSQ

XP_038884261.1 protein Iojap-related, mitochondrial [Benincasa hispida]4.1e-7384.62Show/hide
Query:  MLVAQRIRSSSAFSSTIRSLQQWNKGIFVHNHTVSSSTASSSNNGLLDLQEVETVLNNVKADDVKVIPIRKDCDWADYMVFATGRSTWHVKNIAQALIYK
        ML AQRI+SSSAFSSTIRSLQ WN+G+ VHNH +SSSTASS+N GLLDLQEVET+LNNVKADDVKVI +RK+CDWADYMVFATGRSTWHVKNIAQALIYK
Subjt:  MLVAQRIRSSSAFSSTIRSLQQWNKGIFVHNHTVSSSTASSSNNGLLDLQEVETVLNNVKADDVKVIPIRKDCDWADYMVFATGRSTWHVKNIAQALIYK

Query:  AGCFYISIKQKQKGARQLILPSVEGQEDGKWIVIDSGKVVVHALDENARTYYNLESLWSTETAPDDSSQ
               +KQKQKGARQL+LPSVEGQEDGKWIVIDSGKVVVHALDENAR+YYNLESLWSTET  DDSSQ
Subjt:  AGCFYISIKQKQKGARQLILPSVEGQEDGKWIVIDSGKVVVHALDENARTYYNLESLWSTETAPDDSSQ

TrEMBL top hitse value%identityAlignment
A0A0A0LNG9 Uncharacterized protein1.1e-7182.25Show/hide
Query:  MLVAQRIRSSSAFSSTIRSLQQWNKGIFVHNHTVSSSTASSSNNGLLDLQEVETVLNNVKADDVKVIPIRKDCDWADYMVFATGRSTWHVKNIAQALIYK
        ML AQRIRSSSAFSSTIR LQ WN+G+FVH H +SSSTA S +  LLDL+EVET+LN VKADDVKVIP+RKDCDWADYMVFATGRSTWHVKNIAQALIY+
Subjt:  MLVAQRIRSSSAFSSTIRSLQQWNKGIFVHNHTVSSSTASSSNNGLLDLQEVETVLNNVKADDVKVIPIRKDCDWADYMVFATGRSTWHVKNIAQALIYK

Query:  AGCFYISIKQKQKGARQLILPSVEGQEDGKWIVIDSGKVVVHALDENARTYYNLESLWSTETAPDDSSQ
               IKQKQKGARQL+LPSVEGQE+GKWIVIDSGKVVVHALDENAR+YYNLESLWSTET PDDS+Q
Subjt:  AGCFYISIKQKQKGARQLILPSVEGQEDGKWIVIDSGKVVVHALDENARTYYNLESLWSTETAPDDSSQ

A0A1S3BB26 protein Iojap-related, mitochondrial1.9e-7181.66Show/hide
Query:  MLVAQRIRSSSAFSSTIRSLQQWNKGIFVHNHTVSSSTASSSNNGLLDLQEVETVLNNVKADDVKVIPIRKDCDWADYMVFATGRSTWHVKNIAQALIYK
        ML AQRIRSSSAFSSTIR LQ WN+G+ VH+H +SSST+SS +  LLDLQEVET+LN VKADDVKVIP+RKDCDWADYMVFATGRSTWHVKNIAQALIYK
Subjt:  MLVAQRIRSSSAFSSTIRSLQQWNKGIFVHNHTVSSSTASSSNNGLLDLQEVETVLNNVKADDVKVIPIRKDCDWADYMVFATGRSTWHVKNIAQALIYK

Query:  AGCFYISIKQKQKGARQLILPSVEGQEDGKWIVIDSGKVVVHALDENARTYYNLESLWSTETAPDDSSQ
               +KQKQKGA+QL+LPSVEGQE+GKWIVIDSGKVVVHALDENAR+YYNLESLWSTET PDDS+Q
Subjt:  AGCFYISIKQKQKGARQLILPSVEGQEDGKWIVIDSGKVVVHALDENARTYYNLESLWSTETAPDDSSQ

A0A6J1BP74 protein Iojap-related, mitochondrial1.4e-8295.86Show/hide
Query:  MLVAQRIRSSSAFSSTIRSLQQWNKGIFVHNHTVSSSTASSSNNGLLDLQEVETVLNNVKADDVKVIPIRKDCDWADYMVFATGRSTWHVKNIAQALIYK
        MLVAQRIRSSSAFSSTIRSLQQWNKGIFVHNHTVSSSTASSSNNGLLDLQEVETVLNNVKADDVKVIPIRKDCDWADYMVFATGRSTWHVKNIAQALIYK
Subjt:  MLVAQRIRSSSAFSSTIRSLQQWNKGIFVHNHTVSSSTASSSNNGLLDLQEVETVLNNVKADDVKVIPIRKDCDWADYMVFATGRSTWHVKNIAQALIYK

Query:  AGCFYISIKQKQKGARQLILPSVEGQEDGKWIVIDSGKVVVHALDENARTYYNLESLWSTETAPDDSSQ
               IKQKQKGARQLILPSVEGQEDGKWIVIDSGKVVVHALDENARTYYNLESLWSTETAPDDSSQ
Subjt:  AGCFYISIKQKQKGARQLILPSVEGQEDGKWIVIDSGKVVVHALDENARTYYNLESLWSTETAPDDSSQ

A0A6J1HAW7 protein Iojap-related, mitochondrial4.9e-7283.43Show/hide
Query:  MLVAQRIRSSSAFSSTIRSLQQWNKGIFVHNHTVSSSTASSSNNGLLDLQEVETVLNNVKADDVKVIPIRKDCDWADYMVFATGRSTWHVKNIAQALIYK
        ML AQRIRSSSA SSTIR LQ WN+G+ V NHT+SSSTASS   GLLDLQEVET+LNNVKADDV+VIP+RKDCDWADYMVFATGRSTWHVKNIAQALIYK
Subjt:  MLVAQRIRSSSAFSSTIRSLQQWNKGIFVHNHTVSSSTASSSNNGLLDLQEVETVLNNVKADDVKVIPIRKDCDWADYMVFATGRSTWHVKNIAQALIYK

Query:  AGCFYISIKQKQKGARQLILPSVEGQEDGKWIVIDSGKVVVHALDENARTYYNLESLWSTETAPDDSSQ
               +KQKQKGARQL+LPSVEGQEDGKWIVIDSGKVVVHALDENARTYYNLESLWS +T  DDSSQ
Subjt:  AGCFYISIKQKQKGARQLILPSVEGQEDGKWIVIDSGKVVVHALDENARTYYNLESLWSTETAPDDSSQ

A0A6J1KB66 protein Iojap-related, mitochondrial1.3e-7284.02Show/hide
Query:  MLVAQRIRSSSAFSSTIRSLQQWNKGIFVHNHTVSSSTASSSNNGLLDLQEVETVLNNVKADDVKVIPIRKDCDWADYMVFATGRSTWHVKNIAQALIYK
        ML AQRIRSSSA SSTIR LQ WN+G+ V NHT+SSSTASS N GLLDLQEVET+LNNVKADDV+VIP+RKDCDWADYMVFATGRSTWHVKNIAQALIYK
Subjt:  MLVAQRIRSSSAFSSTIRSLQQWNKGIFVHNHTVSSSTASSSNNGLLDLQEVETVLNNVKADDVKVIPIRKDCDWADYMVFATGRSTWHVKNIAQALIYK

Query:  AGCFYISIKQKQKGARQLILPSVEGQEDGKWIVIDSGKVVVHALDENARTYYNLESLWSTETAPDDSSQ
               +KQKQKGARQL+LPSVEGQEDGKWIVIDSGKVVVHALDE ARTYYNLESLWST+T  DDSSQ
Subjt:  AGCFYISIKQKQKGARQLILPSVEGQEDGKWIVIDSGKVVVHALDENARTYYNLESLWSTETAPDDSSQ

SwissProt top hitse value%identityAlignment
P0AAT6 Ribosomal silencing factor RsfS8.8e-1030.77Show/hide
Query:  LNNVKADDVKVIPIRKDCDWADYMVFATGRSTWHVKNIAQALIYKAGCFYISIKQKQKGARQLILPSVEGQEDGKWIVIDSGKVVVHALDENARTYYNLE
        ++++K  D+  + ++      D M+  TG S+ HV +IA  ++            ++  A  L+   VEG+    WIV+D G V+VH + E +R  Y LE
Subjt:  LNNVKADDVKVIPIRKDCDWADYMVFATGRSTWHVKNIAQALIYKAGCFYISIKQKQKGARQLILPSVEGQEDGKWIVIDSGKVVVHALDENARTYYNLE

Query:  SLWS
         LWS
Subjt:  SLWS

P0AAT7 Ribosomal silencing factor RsfS8.8e-1030.77Show/hide
Query:  LNNVKADDVKVIPIRKDCDWADYMVFATGRSTWHVKNIAQALIYKAGCFYISIKQKQKGARQLILPSVEGQEDGKWIVIDSGKVVVHALDENARTYYNLE
        ++++K  D+  + ++      D M+  TG S+ HV +IA  ++            ++  A  L+   VEG+    WIV+D G V+VH + E +R  Y LE
Subjt:  LNNVKADDVKVIPIRKDCDWADYMVFATGRSTWHVKNIAQALIYKAGCFYISIKQKQKGARQLILPSVEGQEDGKWIVIDSGKVVVHALDENARTYYNLE

Query:  SLWS
         LWS
Subjt:  SLWS

P0AAT8 Ribosomal silencing factor RsfS8.8e-1030.77Show/hide
Query:  LNNVKADDVKVIPIRKDCDWADYMVFATGRSTWHVKNIAQALIYKAGCFYISIKQKQKGARQLILPSVEGQEDGKWIVIDSGKVVVHALDENARTYYNLE
        ++++K  D+  + ++      D M+  TG S+ HV +IA  ++            ++  A  L+   VEG+    WIV+D G V+VH + E +R  Y LE
Subjt:  LNNVKADDVKVIPIRKDCDWADYMVFATGRSTWHVKNIAQALIYKAGCFYISIKQKQKGARQLILPSVEGQEDGKWIVIDSGKVVVHALDENARTYYNLE

Query:  SLWS
         LWS
Subjt:  SLWS

Q02SH2 Ribosomal silencing factor RsfS1.4e-1035.92Show/hide
Query:  LNNVKADDVKVIPIRKDCDWADYMVFATGRSTWHVKNIAQALIYKAGCFYISIKQKQKGARQLILPSVEGQEDGKWIVIDSGKVVVHALDENARTYYNLE
        L ++KA D+  + +R      DYMV A G S+  VK++A  ++ KA         K+ G + L     EG E G+W ++D G VVVH +    R +Y+LE
Subjt:  LNNVKADDVKVIPIRKDCDWADYMVFATGRSTWHVKNIAQALIYKAGCFYISIKQKQKGARQLILPSVEGQEDGKWIVIDSGKVVVHALDENARTYYNLE

Query:  SLW
         LW
Subjt:  SLW

Q9CAF9 Protein Iojap-related, mitochondrial2.5e-3651.46Show/hide
Query:  MLVAQRIRSSSAFSSTIRSLQQWN---KGIFVHNHTVSSSTASSSNNGLLDLQEVETVLNNVKADDVKVIPIRKDCDWADYMVFATGRSTWHVKNIAQAL
        ML   R R SS   +     Q W      IF  + + SSS   S+ + +L L EVE +L +VKAD+V VIP    C WAD+ V ATGRS WH++NIAQAL
Subjt:  MLVAQRIRSSSAFSSTIRSLQQWN---KGIFVHNHTVSSSTASSSNNGLLDLQEVETVLNNVKADDVKVIPIRKDCDWADYMVFATGRSTWHVKNIAQAL

Query:  IYKAGCFYISIKQKQKGARQLILPSVEGQEDGKWIVIDSGKVVVHALDENARTYYNLESLWSTETAPDDSS
        +Y+A       KQKQKGA+ ++LPSV+G  + KWIVID GK VVHALDE AR Y+NLESLWS E++  D+S
Subjt:  IYKAGCFYISIKQKQKGARQLILPSVEGQEDGKWIVIDSGKVVVHALDENARTYYNLESLWSTETAPDDSS

Arabidopsis top hitse value%identityAlignment
AT1G67620.1 Lojap-related protein1.7e-3751.46Show/hide
Query:  MLVAQRIRSSSAFSSTIRSLQQWN---KGIFVHNHTVSSSTASSSNNGLLDLQEVETVLNNVKADDVKVIPIRKDCDWADYMVFATGRSTWHVKNIAQAL
        ML   R R SS   +     Q W      IF  + + SSS   S+ + +L L EVE +L +VKAD+V VIP    C WAD+ V ATGRS WH++NIAQAL
Subjt:  MLVAQRIRSSSAFSSTIRSLQQWN---KGIFVHNHTVSSSTASSSNNGLLDLQEVETVLNNVKADDVKVIPIRKDCDWADYMVFATGRSTWHVKNIAQAL

Query:  IYKAGCFYISIKQKQKGARQLILPSVEGQEDGKWIVIDSGKVVVHALDENARTYYNLESLWSTETAPDDSS
        +Y+A       KQKQKGA+ ++LPSV+G  + KWIVID GK VVHALDE AR Y+NLESLWS E++  D+S
Subjt:  IYKAGCFYISIKQKQKGARQLILPSVEGQEDGKWIVIDSGKVVVHALDENARTYYNLESLWSTETAPDDSS

AT3G12930.1 Lojap-related protein1.9e-0426.83Show/hide
Query:  EVETVLNNVKADDVKVIPIRKDCDWADYMVFATGRSTWHVKNIAQALIYKAGCFYISIKQKQKGARQLILPSVEGQEDGKWIVIDSGKVVVHALDENART
        E+  V ++VKA D+KV+ ++    W  + + AT  S   +  I   +        ++ K+  K A   + P+        W ++D G VV+H      RT
Subjt:  EVETVLNNVKADDVKVIPIRKDCDWADYMVFATGRSTWHVKNIAQALIYKAGCFYISIKQKQKGARQLILPSVEGQEDGKWIVIDSGKVVVHALDENART

Query:  YYNLESLWST----ETAPDDSSQ
        +YNLE  +      E   +D SQ
Subjt:  YYNLESLWST----ETAPDDSSQ


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTGGTGGCGCAAAGAATTCGATCTTCATCTGCTTTTTCTTCCACGATTCGTTCTTTGCAACAATGGAATAAGGGCATTTTTGTTCACAACCATACTGTATCTTCCTC
CACTGCCAGCTCTAGCAACAATGGTCTTCTTGATCTTCAGGAGGTCGAGACGGTTCTGAATAACGTGAAGGCGGACGATGTCAAAGTGATACCAATCCGCAAAGACTGTG
ATTGGGCTGATTACATGGTGTTCGCCACTGGTAGGTCGACCTGGCATGTTAAGAACATTGCTCAAGCCCTAATTTACAAGGCAGGTTGCTTTTACATTTCTATCAAGCAA
AAGCAGAAAGGAGCTAGACAGTTGATACTCCCTAGTGTCGAAGGGCAAGAGGACGGAAAGTGGATTGTCATCGATTCTGGTAAAGTAGTTGTTCACGCCCTTGATGAGAA
TGCCAGAACTTATTACAATCTGGAAAGCCTTTGGTCAACCGAGACAGCGCCAGATGATTCTTCGCAG
mRNA sequenceShow/hide mRNA sequence
ATGTTGGTGGCGCAAAGAATTCGATCTTCATCTGCTTTTTCTTCCACGATTCGTTCTTTGCAACAATGGAATAAGGGCATTTTTGTTCACAACCATACTGTATCTTCCTC
CACTGCCAGCTCTAGCAACAATGGTCTTCTTGATCTTCAGGAGGTCGAGACGGTTCTGAATAACGTGAAGGCGGACGATGTCAAAGTGATACCAATCCGCAAAGACTGTG
ATTGGGCTGATTACATGGTGTTCGCCACTGGTAGGTCGACCTGGCATGTTAAGAACATTGCTCAAGCCCTAATTTACAAGGCAGGTTGCTTTTACATTTCTATCAAGCAA
AAGCAGAAAGGAGCTAGACAGTTGATACTCCCTAGTGTCGAAGGGCAAGAGGACGGAAAGTGGATTGTCATCGATTCTGGTAAAGTAGTTGTTCACGCCCTTGATGAGAA
TGCCAGAACTTATTACAATCTGGAAAGCCTTTGGTCAACCGAGACAGCGCCAGATGATTCTTCGCAG
Protein sequenceShow/hide protein sequence
MLVAQRIRSSSAFSSTIRSLQQWNKGIFVHNHTVSSSTASSSNNGLLDLQEVETVLNNVKADDVKVIPIRKDCDWADYMVFATGRSTWHVKNIAQALIYKAGCFYISIKQ
KQKGARQLILPSVEGQEDGKWIVIDSGKVVVHALDENARTYYNLESLWSTETAPDDSSQ