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MS000967 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS000967
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionRNA helicase family protein
Genome locationscaffold36:528555..528785
RNA-Seq ExpressionMS000967
SyntenyMS000967
Gene Ontology termsGO:0000166 - nucleotide binding (molecular function)
GO:0003723 - RNA binding (molecular function)
GO:0004386 - helicase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022132197.1 probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH4 isoform X1 [Momordica charantia]9.8e-1461.04Show/hide
Query:  CINYLLDIHTQQPDGDLESVSDIIFTTLSLYQHNSILKDDIEKSVSKLEERVYNL-EGSCMDAIILPLHGSLPPDLQ
        C+   +DIHTQ+P+GD+     +IF T          +DDIEK VSKLEE+VYNL EGSCMDAIILPLHGSLPP+LQ
Subjt:  CINYLLDIHTQQPDGDLESVSDIIFTTLSLYQHNSILKDDIEKSVSKLEERVYNL-EGSCMDAIILPLHGSLPPDLQ
XP_022132198.1 probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH4 isoform X2 [Momordica charantia]9.8e-1461.04Show/hide
Query:  CINYLLDIHTQQPDGDLESVSDIIFTTLSLYQHNSILKDDIEKSVSKLEERVYNL-EGSCMDAIILPLHGSLPPDLQ
        C+   +DIHTQ+P+GD+     +IF T          +DDIEK VSKLEE+VYNL EGSCMDAIILPLHGSLPP+LQ
Subjt:  CINYLLDIHTQQPDGDLESVSDIIFTTLSLYQHNSILKDDIEKSVSKLEERVYNL-EGSCMDAIILPLHGSLPPDLQ
XP_022962410.1 probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH4 isoform X2 [Cucurbita moschata]4.9e-1357.14Show/hide
Query:  CINYLLDIHTQQPDGDLESVSDIIFTTLSLYQHNSILKDDIEKSVSKLEERVYNL-EGSCMDAIILPLHGSLPPDLQ
        C+   +DIHT++P+GD+     +IF T          +DDIEK VSKLEE+VYNL EGSCMDA++LPLHGSLPP+LQ
Subjt:  CINYLLDIHTQQPDGDLESVSDIIFTTLSLYQHNSILKDDIEKSVSKLEERVYNL-EGSCMDAIILPLHGSLPPDLQ
XP_038884454.1 probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH4 isoform X1 [Benincasa hispida]3.7e-1358.44Show/hide
Query:  CINYLLDIHTQQPDGDLESVSDIIFTTLSLYQHNSILKDDIEKSVSKLEERVYNL-EGSCMDAIILPLHGSLPPDLQ
        C+   +DIHT++P+GD+     +IF T          +DDIEK VSKLEE+VYNL EGSCMDA+ILPLHGSLPP+LQ
Subjt:  CINYLLDIHTQQPDGDLESVSDIIFTTLSLYQHNSILKDDIEKSVSKLEERVYNL-EGSCMDAIILPLHGSLPPDLQ
XP_038884458.1 probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH4 isoform X2 [Benincasa hispida]3.7e-1358.44Show/hide
Query:  CINYLLDIHTQQPDGDLESVSDIIFTTLSLYQHNSILKDDIEKSVSKLEERVYNL-EGSCMDAIILPLHGSLPPDLQ
        C+   +DIHT++P+GD+     +IF T          +DDIEK VSKLEE+VYNL EGSCMDA+ILPLHGSLPP+LQ
Subjt:  CINYLLDIHTQQPDGDLESVSDIIFTTLSLYQHNSILKDDIEKSVSKLEERVYNL-EGSCMDAIILPLHGSLPPDLQ
TrEMBL top hitse value%identityAlignment
A0A6J1BT65 probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH4 isoform X14.8e-1461.04Show/hide
Query:  CINYLLDIHTQQPDGDLESVSDIIFTTLSLYQHNSILKDDIEKSVSKLEERVYNL-EGSCMDAIILPLHGSLPPDLQ
        C+   +DIHTQ+P+GD+     +IF T          +DDIEK VSKLEE+VYNL EGSCMDAIILPLHGSLPP+LQ
Subjt:  CINYLLDIHTQQPDGDLESVSDIIFTTLSLYQHNSILKDDIEKSVSKLEERVYNL-EGSCMDAIILPLHGSLPPDLQ
A0A6J1BVL0 probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH4 isoform X24.8e-1461.04Show/hide
Query:  CINYLLDIHTQQPDGDLESVSDIIFTTLSLYQHNSILKDDIEKSVSKLEERVYNL-EGSCMDAIILPLHGSLPPDLQ
        C+   +DIHTQ+P+GD+     +IF T          +DDIEK VSKLEE+VYNL EGSCMDAIILPLHGSLPP+LQ
Subjt:  CINYLLDIHTQQPDGDLESVSDIIFTTLSLYQHNSILKDDIEKSVSKLEERVYNL-EGSCMDAIILPLHGSLPPDLQ
A0A6J1HEZ2 probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH4 isoform X22.4e-1357.14Show/hide
Query:  CINYLLDIHTQQPDGDLESVSDIIFTTLSLYQHNSILKDDIEKSVSKLEERVYNL-EGSCMDAIILPLHGSLPPDLQ
        C+   +DIHT++P+GD+     +IF T          +DDIEK VSKLEE+VYNL EGSCMDA++LPLHGSLPP+LQ
Subjt:  CINYLLDIHTQQPDGDLESVSDIIFTTLSLYQHNSILKDDIEKSVSKLEERVYNL-EGSCMDAIILPLHGSLPPDLQ
A0A6J1K7M0 probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH4 isoform X22.4e-1357.14Show/hide
Query:  CINYLLDIHTQQPDGDLESVSDIIFTTLSLYQHNSILKDDIEKSVSKLEERVYNL-EGSCMDAIILPLHGSLPPDLQ
        C+   +DIHT++P+GD+     +IF T          +DDIEK VSKLEE+VYNL EGSCMDA++LPLHGSLPP+LQ
Subjt:  CINYLLDIHTQQPDGDLESVSDIIFTTLSLYQHNSILKDDIEKSVSKLEERVYNL-EGSCMDAIILPLHGSLPPDLQ
A0A6J1K9J4 probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH4 isoform X12.4e-1357.14Show/hide
Query:  CINYLLDIHTQQPDGDLESVSDIIFTTLSLYQHNSILKDDIEKSVSKLEERVYNL-EGSCMDAIILPLHGSLPPDLQ
        C+   +DIHT++P+GD+     +IF T          +DDIEK VSKLEE+VYNL EGSCMDA++LPLHGSLPP+LQ
Subjt:  CINYLLDIHTQQPDGDLESVSDIIFTTLSLYQHNSILKDDIEKSVSKLEERVYNL-EGSCMDAIILPLHGSLPPDLQ
SwissProt top hitse value%identityAlignment
Q93Y16 Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH47.3e-1254.17Show/hide
Query:  LDIHTQQPDGDLESVSDIIFTTLSLYQHNSILKDDIEKSVSKLEERVYNL-EGSCMDAIILPLHGSLPPDLQ
        +DIH ++P+GD+     +IF T          +DDIEK VS+LEE+V +L EGSCMDAII PLHGSLPP++Q
Subjt:  LDIHTQQPDGDLESVSDIIFTTLSLYQHNSILKDDIEKSVSKLEERVYNL-EGSCMDAIILPLHGSLPPDLQ
Arabidopsis top hitse value%identityAlignment
AT1G27900.1 RNA helicase family protein5.2e-1354.17Show/hide
Query:  LDIHTQQPDGDLESVSDIIFTTLSLYQHNSILKDDIEKSVSKLEERVYNL-EGSCMDAIILPLHGSLPPDLQ
        +DIH ++P+GD+     +IF T          +DDIEK VS+LEE+V +L EGSCMDAII PLHGSLPP++Q
Subjt:  LDIHTQQPDGDLESVSDIIFTTLSLYQHNSILKDDIEKSVSKLEERVYNL-EGSCMDAIILPLHGSLPPDLQ

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TGCATTAATTATTTGCTAGATATACATACCCAACAACCAGATGGGGATCTGGAATCTGTGTCTGACATTATTTTCACCACATTGTCTCTTTATCAACACAACTCAATCTT
GAAGGATGACATAGAGAAGTCAGTATCAAAGTTGGAGGAAAGAGTTTACAATTTAGAAGGATCTTGCATGGATGCTATAATTCTTCCCCTTCATGGTTCATTGCCACCAG
ACCTGCAGGCA
mRNA sequenceShow/hide mRNA sequence
TGCATTAATTATTTGCTAGATATACATACCCAACAACCAGATGGGGATCTGGAATCTGTGTCTGACATTATTTTCACCACATTGTCTCTTTATCAACACAACTCAATCTT
GAAGGATGACATAGAGAAGTCAGTATCAAAGTTGGAGGAAAGAGTTTACAATTTAGAAGGATCTTGCATGGATGCTATAATTCTTCCCCTTCATGGTTCATTGCCACCAG
ACCTGCAGGCA
Protein sequenceShow/hide protein sequence
CINYLLDIHTQQPDGDLESVSDIIFTTLSLYQHNSILKDDIEKSVSKLEERVYNLEGSCMDAIILPLHGSLPPDLQA