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MS000978 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS000978
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionSignal peptidase complex subunit 1
Genome locationscaffold36:599796..600071
RNA-Seq ExpressionMS000978
SyntenyMS000978
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0006465 - signal peptide processing (biological process)
GO:0045047 - protein targeting to ER (biological process)
GO:0005787 - signal peptidase complex (cellular component)
GO:0015934 - large ribosomal subunit (cellular component)
GO:0030176 - integral component of endoplasmic reticulum membrane (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR009542 - Signal peptidase complex subunit Spc1/SPCS1


Homology Show/hide homology
GenBank top hitse value%identityAlignment
PNT14984.1 hypothetical protein POPTR_010G059300 [Populus trichocarpa]7.3e-3281.52Show/hide
Query:  MDWQGQKLAEHLMQIMLLVFAAVAFATGYTIGSFRTMILVYAGGVVFTALVTVPNWRFFNRHPLKWLDPSEAEKHPKPQKPVNPNPKKKSTK
        MDWQGQK AE  MQI+LLVFAAVA ATGY IGSFR M+L+YAGGVVFT LVTVPNW FFNRHPLKWLDPSEAEKHPKPQK V    KKKS+K
Subjt:  MDWQGQKLAEHLMQIMLLVFAAVAFATGYTIGSFRTMILVYAGGVVFTALVTVPNWRFFNRHPLKWLDPSEAEKHPKPQKPVNPNPKKKSTK

XP_002314538.1 probable signal peptidase complex subunit 1 [Populus trichocarpa]7.3e-3281.52Show/hide
Query:  MDWQGQKLAEHLMQIMLLVFAAVAFATGYTIGSFRTMILVYAGGVVFTALVTVPNWRFFNRHPLKWLDPSEAEKHPKPQKPVNPNPKKKSTK
        MDWQGQK AE  MQI+LLVFAAVA ATGY IGSFR M+L+YAGGVVFT LVTVPNW FFNRHPLKWLDPSEAEKHPKPQK V    KKKS+K
Subjt:  MDWQGQKLAEHLMQIMLLVFAAVAFATGYTIGSFRTMILVYAGGVVFTALVTVPNWRFFNRHPLKWLDPSEAEKHPKPQKPVNPNPKKKSTK

XP_006484083.1 probable signal peptidase complex subunit 1 [Citrus sinensis]5.6e-3281.52Show/hide
Query:  MDWQGQKLAEHLMQIMLLVFAAVAFATGYTIGSFRTMILVYAGGVVFTALVTVPNWRFFNRHPLKWLDPSEAEKHPKPQKPVNPNPKKKSTK
        MDWQGQKLAEHLMQI+LL FA VAFATGY +GSF+ MIL+YAGGVV T LVTVPNW FFNRHPLKWLDPSEAEKHPKPQ  V  N KKKS K
Subjt:  MDWQGQKLAEHLMQIMLLVFAAVAFATGYTIGSFRTMILVYAGGVVFTALVTVPNWRFFNRHPLKWLDPSEAEKHPKPQKPVNPNPKKKSTK

XP_011014063.1 PREDICTED: probable signal peptidase complex subunit 1 [Populus euphratica]9.6e-3280.43Show/hide
Query:  MDWQGQKLAEHLMQIMLLVFAAVAFATGYTIGSFRTMILVYAGGVVFTALVTVPNWRFFNRHPLKWLDPSEAEKHPKPQKPVNPNPKKKSTK
        MDWQGQK AE  MQI+L+VFAA A ATGY IGSFR M+L+YAGGVVFTALVTVPNW FFNRHPLKWLDPSEAEKHPKP+K V  N KKKS+K
Subjt:  MDWQGQKLAEHLMQIMLLVFAAVAFATGYTIGSFRTMILVYAGGVVFTALVTVPNWRFFNRHPLKWLDPSEAEKHPKPQKPVNPNPKKKSTK

XP_011041506.1 PREDICTED: probable signal peptidase complex subunit 1 [Populus euphratica]4.3e-3281.52Show/hide
Query:  MDWQGQKLAEHLMQIMLLVFAAVAFATGYTIGSFRTMILVYAGGVVFTALVTVPNWRFFNRHPLKWLDPSEAEKHPKPQKPVNPNPKKKSTK
        MDWQGQK AE  MQI+LLVFAA A ATGY IGSFR M+L+YAGGVVFTALVTVPNW FFNRHPLKWLDPSEAEKHPKP+K V  N KKKS+K
Subjt:  MDWQGQKLAEHLMQIMLLVFAAVAFATGYTIGSFRTMILVYAGGVVFTALVTVPNWRFFNRHPLKWLDPSEAEKHPKPQKPVNPNPKKKSTK

TrEMBL top hitse value%identityAlignment
A0A067H2H9 Uncharacterized protein2.7e-3281.52Show/hide
Query:  MDWQGQKLAEHLMQIMLLVFAAVAFATGYTIGSFRTMILVYAGGVVFTALVTVPNWRFFNRHPLKWLDPSEAEKHPKPQKPVNPNPKKKSTK
        MDWQGQKLAEHLMQI+LL FA VAFATGY +GSF+ MIL+YAGGVV T LVTVPNW FFNRHPLKWLDPSEAEKHPKPQ  V  N KKKS K
Subjt:  MDWQGQKLAEHLMQIMLLVFAAVAFATGYTIGSFRTMILVYAGGVVFTALVTVPNWRFFNRHPLKWLDPSEAEKHPKPQKPVNPNPKKKSTK

A0A1S8ADH4 Microsomal signal peptidase2.7e-3281.52Show/hide
Query:  MDWQGQKLAEHLMQIMLLVFAAVAFATGYTIGSFRTMILVYAGGVVFTALVTVPNWRFFNRHPLKWLDPSEAEKHPKPQKPVNPNPKKKSTK
        MDWQGQKLAEHLMQI+LL FA VAFATGY +GSF+ MIL+YAGGVV T LVTVPNW FFNRHPLKWLDPSEAEKHPKPQ  V  N KKKS K
Subjt:  MDWQGQKLAEHLMQIMLLVFAAVAFATGYTIGSFRTMILVYAGGVVFTALVTVPNWRFFNRHPLKWLDPSEAEKHPKPQKPVNPNPKKKSTK

B9HT84 Uncharacterized protein3.5e-3281.52Show/hide
Query:  MDWQGQKLAEHLMQIMLLVFAAVAFATGYTIGSFRTMILVYAGGVVFTALVTVPNWRFFNRHPLKWLDPSEAEKHPKPQKPVNPNPKKKSTK
        MDWQGQK AE  MQI+LLVFAAVA ATGY IGSFR M+L+YAGGVVFT LVTVPNW FFNRHPLKWLDPSEAEKHPKPQK V    KKKS+K
Subjt:  MDWQGQKLAEHLMQIMLLVFAAVAFATGYTIGSFRTMILVYAGGVVFTALVTVPNWRFFNRHPLKWLDPSEAEKHPKPQKPVNPNPKKKSTK

U5G3S5 Uncharacterized protein3.5e-3281.52Show/hide
Query:  MDWQGQKLAEHLMQIMLLVFAAVAFATGYTIGSFRTMILVYAGGVVFTALVTVPNWRFFNRHPLKWLDPSEAEKHPKPQKPVNPNPKKKSTK
        MDWQGQK AE  MQI+LLVFAAVA ATGY IGSFR M+L+YAGGVVFT LVTVPNW FFNRHPLKWLDPSEAEKHPKPQK V    KKKS+K
Subjt:  MDWQGQKLAEHLMQIMLLVFAAVAFATGYTIGSFRTMILVYAGGVVFTALVTVPNWRFFNRHPLKWLDPSEAEKHPKPQKPVNPNPKKKSTK

W9S0F4 60S ribosomal protein L17-26.0e-3276.09Show/hide
Query:  MDWQGQKLAEHLMQIMLLVFAAVAFATGYTIGSFRTMILVYAGGVVFTALVTVPNWRFFNRHPLKWLDPSEAEKHPKPQKPVNPNPKKKSTK
        MDWQGQKLAE LMQIMLL FA V FATGY +GSF+TM+L+YAGGVV T L+T+PNW FFNRHPLKWLDPSEAEKHPKPQ+      KKKS+K
Subjt:  MDWQGQKLAEHLMQIMLLVFAAVAFATGYTIGSFRTMILVYAGGVVFTALVTVPNWRFFNRHPLKWLDPSEAEKHPKPQKPVNPNPKKKSTK

SwissProt top hitse value%identityAlignment
Q3T134 Signal peptidase complex subunit 11.1e-0940.96Show/hide
Query:  MDWQGQKLAEHLMQIMLLVFAAVAFATGYTIGSFRTMILVYAGGVVFTALVTVPNWRFFNRHPLKWL---DPSEAEKHPKPQK
        MD++GQKLAE + Q ++L  A V F  GY    F   + +   G  F+ L+T+P W  + RHPLKWL   D S  +K P  +K
Subjt:  MDWQGQKLAEHLMQIMLLVFAAVAFATGYTIGSFRTMILVYAGGVVFTALVTVPNWRFFNRHPLKWL---DPSEAEKHPKPQK

Q5RF96 Signal peptidase complex subunit 11.1e-0940.26Show/hide
Query:  MDWQGQKLAEHLMQIMLLVFAAVAFATGYTIGSFRTMILVYAGGVVFTALVTVPNWRFFNRHPLKWLDPSEAEKHPK
        MD++GQKLAE + Q ++L  A V F  GY    F   + +   G  F+ L+T+P W  + RHPLKWL   E+    K
Subjt:  MDWQGQKLAEHLMQIMLLVFAAVAFATGYTIGSFRTMILVYAGGVVFTALVTVPNWRFFNRHPLKWLDPSEAEKHPK

Q944J0 Probable signal peptidase complex subunit 11.1e-2768.48Show/hide
Query:  MDWQGQKLAEHLMQIMLLVFAAVAFATGYTIGSFRTMILVYAGGVVFTALVTVPNWRFFNRHPLKWLDPSEAEKHPKPQKPVNPNPKKKSTK
        MDWQGQKL E LMQI+L++   VA   GYT  SFRTM+L+YAGGVV T LVTVPNW F+N HPLKWLDPSEAEKHPKP+  V+   KKK +K
Subjt:  MDWQGQKLAEHLMQIMLLVFAAVAFATGYTIGSFRTMILVYAGGVVFTALVTVPNWRFFNRHPLKWLDPSEAEKHPKPQKPVNPNPKKKSTK

Q9D958 Signal peptidase complex subunit 11.4e-0943.28Show/hide
Query:  MDWQGQKLAEHLMQIMLLVFAAVAFATGYTIGSFRTMILVYAGGVVFTALVTVPNWRFFNRHPLKWL
        MD++GQKLAE + Q ++L  A V F  GY    F   + +   G  F+ L+T+P W  + RHPLKWL
Subjt:  MDWQGQKLAEHLMQIMLLVFAAVAFATGYTIGSFRTMILVYAGGVVFTALVTVPNWRFFNRHPLKWL

Q9Y6A9 Signal peptidase complex subunit 11.1e-0940.26Show/hide
Query:  MDWQGQKLAEHLMQIMLLVFAAVAFATGYTIGSFRTMILVYAGGVVFTALVTVPNWRFFNRHPLKWLDPSEAEKHPK
        MD++GQKLAE + Q ++L  A V F  GY    F   + +   G  F+ L+T+P W  + RHPLKWL   E+    K
Subjt:  MDWQGQKLAEHLMQIMLLVFAAVAFATGYTIGSFRTMILVYAGGVVFTALVTVPNWRFFNRHPLKWLDPSEAEKHPK

Arabidopsis top hitse value%identityAlignment
AT2G22425.1 Microsomal signal peptidase 12 kDa subunit (SPC12)8.1e-2968.48Show/hide
Query:  MDWQGQKLAEHLMQIMLLVFAAVAFATGYTIGSFRTMILVYAGGVVFTALVTVPNWRFFNRHPLKWLDPSEAEKHPKPQKPVNPNPKKKSTK
        MDWQGQKL E LMQI+L++   VA   GYT  SFRTM+L+YAGGVV T LVTVPNW F+N HPLKWLDPSEAEKHPKP+  V+   KKK +K
Subjt:  MDWQGQKLAEHLMQIMLLVFAAVAFATGYTIGSFRTMILVYAGGVVFTALVTVPNWRFFNRHPLKWLDPSEAEKHPKPQKPVNPNPKKKSTK

AT2G22425.2 Microsomal signal peptidase 12 kDa subunit (SPC12)8.1e-2968.48Show/hide
Query:  MDWQGQKLAEHLMQIMLLVFAAVAFATGYTIGSFRTMILVYAGGVVFTALVTVPNWRFFNRHPLKWLDPSEAEKHPKPQKPVNPNPKKKSTK
        MDWQGQKL E LMQI+L++   VA   GYT  SFRTM+L+YAGGVV T LVTVPNW F+N HPLKWLDPSEAEKHPKP+  V+   KKK +K
Subjt:  MDWQGQKLAEHLMQIMLLVFAAVAFATGYTIGSFRTMILVYAGGVVFTALVTVPNWRFFNRHPLKWLDPSEAEKHPKPQKPVNPNPKKKSTK

AT4G40042.1 Microsomal signal peptidase 12 kDa subunit (SPC12)1.5e-3069.57Show/hide
Query:  MDWQGQKLAEHLMQIMLLVFAAVAFATGYTIGSFRTMILVYAGGVVFTALVTVPNWRFFNRHPLKWLDPSEAEKHPKPQKPVNPNPKKKSTK
        MDWQGQKLAE LMQI+LL+ A V+F  GYT  SFR M+L+YAGGVV T L+T+PNW  FNRH LKWLDPSEAEKHPKPQ  V  + KK S+K
Subjt:  MDWQGQKLAEHLMQIMLLVFAAVAFATGYTIGSFRTMILVYAGGVVFTALVTVPNWRFFNRHPLKWLDPSEAEKHPKPQKPVNPNPKKKSTK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATTGGCAAGGGCAAAAGCTTGCGGAGCACTTGATGCAGATAATGCTGCTGGTATTTGCAGCGGTGGCGTTCGCGACAGGCTATACGATCGGATCATTCAGGACGAT
GATCCTCGTCTACGCCGGTGGCGTGGTTTTCACCGCATTGGTTACTGTTCCGAATTGGCGTTTCTTCAATCGCCACCCTCTCAAGTGGCTGGACCCTAGCGAAGCCGAGA
AGCATCCTAAGCCCCAAAAACCTGTGAATCCAAATCCAAAGAAGAAATCCACCAAG
mRNA sequenceShow/hide mRNA sequence
ATGGATTGGCAAGGGCAAAAGCTTGCGGAGCACTTGATGCAGATAATGCTGCTGGTATTTGCAGCGGTGGCGTTCGCGACAGGCTATACGATCGGATCATTCAGGACGAT
GATCCTCGTCTACGCCGGTGGCGTGGTTTTCACCGCATTGGTTACTGTTCCGAATTGGCGTTTCTTCAATCGCCACCCTCTCAAGTGGCTGGACCCTAGCGAAGCCGAGA
AGCATCCTAAGCCCCAAAAACCTGTGAATCCAAATCCAAAGAAGAAATCCACCAAG
Protein sequenceShow/hide protein sequence
MDWQGQKLAEHLMQIMLLVFAAVAFATGYTIGSFRTMILVYAGGVVFTALVTVPNWRFFNRHPLKWLDPSEAEKHPKPQKPVNPNPKKKSTK