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MS000983 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS000983
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionnuclear transcription factor Y subunit C-1
Genome locationscaffold36:627659..628078
RNA-Seq ExpressionMS000983
SyntenyMS000983
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0005634 - nucleus (cellular component)
GO:0046982 - protein heterodimerization activity (molecular function)
InterPro domainsIPR003958 - Transcription factor CBF/NF-Y/archaeal histone domain
IPR009072 - Histone-fold


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0064731.1 dr1-associated corepressor [Cucumis melo var. makuwa]9.4e-5584.29Show/hide
Query:  MAEEESGEAIRPEIPTGRVKKIMKVDKDVCKVNSEALFLVSCATDLFLKLLAEKSAEVATEKKRKTVKLEHIRIAVKRHRPISDFLLDSLPLPPQPSDAP
        M EEESGEAIRPE PTGRVKKIMK+DKD+ KVNSEALF+VSCAT+LFLKLLAEKSAEVA EKKRKTVKLEHIR+AVKRHR ISDFLLDSLPLP QPSDAP
Subjt:  MAEEESGEAIRPEIPTGRVKKIMKVDKDVCKVNSEALFLVSCATDLFLKLLAEKSAEVATEKKRKTVKLEHIRIAVKRHRPISDFLLDSLPLPPQPSDAP

Query:  AKDESRTRTAADKAAPEGTRRIDDFFRKPAKTTSDENNES
        AKDE+R R   DK AP GTRRIDDFFR+P KTTS E NES
Subjt:  AKDESRTRTAADKAAPEGTRRIDDFFRKPAKTTSDENNES

XP_008445504.1 PREDICTED: dr1-associated corepressor [Cucumis melo]4.6e-5484.29Show/hide
Query:  MAEEESGEAIRPEIPTGRVKKIMKVDKDVCKVNSEALFLVSCATDLFLKLLAEKSAEVATEKKRKTVKLEHIRIAVKRHRPISDFLLDSLPLPPQPSDAP
        M EEESGEAIRPE PTGRVKKIMK+DKD+ KVNSEALFLVSCAT+LFLKLLAEKSAEVA EKKRKTVKLEHIR+AVKRHR ISDFLLDSLPLP QPSDA 
Subjt:  MAEEESGEAIRPEIPTGRVKKIMKVDKDVCKVNSEALFLVSCATDLFLKLLAEKSAEVATEKKRKTVKLEHIRIAVKRHRPISDFLLDSLPLPPQPSDAP

Query:  AKDESRTRTAADKAAPEGTRRIDDFFRKPAKTTSDENNES
        AKDE+R R   DK AP GTRRIDDFFR+P KTTS E NES
Subjt:  AKDESRTRTAADKAAPEGTRRIDDFFRKPAKTTSDENNES

XP_022132171.1 nuclear transcription factor Y subunit C-1 [Momordica charantia]2.4e-6698.57Show/hide
Query:  MAEEESGEAIRPEIPTGRVKKIMKVDKDVCKVNSEALFLVSCATDLFLKLLAEKSAEVATEKKRKTVKLEHIRIAVKRHRPISDFLLDSLPLPPQPSDAP
        MAEEESGEAIRPEIPTGRVKKIMKVDKDVCKVNSEALFLVSCATDLFLKLLAEKSAEVATEKKRKTVKLEHIRIAVKRHRPISDFLLDSLPLPPQPSDAP
Subjt:  MAEEESGEAIRPEIPTGRVKKIMKVDKDVCKVNSEALFLVSCATDLFLKLLAEKSAEVATEKKRKTVKLEHIRIAVKRHRPISDFLLDSLPLPPQPSDAP

Query:  AKDESRTRTAADKAAPEGTRRIDDFFRKPAKTTSDENNES
        AK+E+RTRTAADKAAPEGTRRIDDFFRKPAKTTSDENNES
Subjt:  AKDESRTRTAADKAAPEGTRRIDDFFRKPAKTTSDENNES

XP_022997291.1 DNA polymerase epsilon subunit C [Cucurbita maxima]6.1e-5482.86Show/hide
Query:  MAEEESGEAIRPEIPTGRVKKIMKVDKDVCKVNSEALFLVSCATDLFLKLLAEKSAEVATEKKRKTVKLEHIRIAVKRHRPISDFLLDSLPLPPQPSDAP
        MAEEE GEAIRPE P GR+KKIMK+DKD+ KVNSEALFLVSCAT+LFL+LLAEKSAEVA EKKRKTVKLEHIRIAVKRH+ ISDFLLDSLPLP QPSDAP
Subjt:  MAEEESGEAIRPEIPTGRVKKIMKVDKDVCKVNSEALFLVSCATDLFLKLLAEKSAEVATEKKRKTVKLEHIRIAVKRHRPISDFLLDSLPLPPQPSDAP

Query:  AKDESRTRTAADKAAPEGTRRIDDFFRKPAKTTSDENNES
        AKDE+RTR   DK APEGTRRIDDFFR+P KT S E NE+
Subjt:  AKDESRTRTAADKAAPEGTRRIDDFFRKPAKTTSDENNES

XP_038884228.1 NCT transcriptional regulatory complex subunit A [Benincasa hispida]4.8e-5989.29Show/hide
Query:  MAEEESGEAIRPEIPTGRVKKIMKVDKDVCKVNSEALFLVSCATDLFLKLLAEKSAEVATEKKRKTVKLEHIRIAVKRHRPISDFLLDSLPLPPQPSDAP
        MAEEESG+AIRPE PTGRVKKIMK+DKD+ KVNSEALFLVSCAT+LFLKLLAEKSAEVA EKKRKTVKLEHIRIAVKRHR ISDFLLDSLPLPPQPSDAP
Subjt:  MAEEESGEAIRPEIPTGRVKKIMKVDKDVCKVNSEALFLVSCATDLFLKLLAEKSAEVATEKKRKTVKLEHIRIAVKRHRPISDFLLDSLPLPPQPSDAP

Query:  AKDESRTRTAADKAAPEGTRRIDDFFRKPAKTTSDENNES
        AKDE+RTRT  DK  PEGTRRIDDFFR+PAKTTS ENNES
Subjt:  AKDESRTRTAADKAAPEGTRRIDDFFRKPAKTTSDENNES

TrEMBL top hitse value%identityAlignment
A0A1S3BDL4 dr1-associated corepressor2.2e-5484.29Show/hide
Query:  MAEEESGEAIRPEIPTGRVKKIMKVDKDVCKVNSEALFLVSCATDLFLKLLAEKSAEVATEKKRKTVKLEHIRIAVKRHRPISDFLLDSLPLPPQPSDAP
        M EEESGEAIRPE PTGRVKKIMK+DKD+ KVNSEALFLVSCAT+LFLKLLAEKSAEVA EKKRKTVKLEHIR+AVKRHR ISDFLLDSLPLP QPSDA 
Subjt:  MAEEESGEAIRPEIPTGRVKKIMKVDKDVCKVNSEALFLVSCATDLFLKLLAEKSAEVATEKKRKTVKLEHIRIAVKRHRPISDFLLDSLPLPPQPSDAP

Query:  AKDESRTRTAADKAAPEGTRRIDDFFRKPAKTTSDENNES
        AKDE+R R   DK AP GTRRIDDFFR+P KTTS E NES
Subjt:  AKDESRTRTAADKAAPEGTRRIDDFFRKPAKTTSDENNES

A0A5A7VG98 Dr1-associated corepressor4.5e-5584.29Show/hide
Query:  MAEEESGEAIRPEIPTGRVKKIMKVDKDVCKVNSEALFLVSCATDLFLKLLAEKSAEVATEKKRKTVKLEHIRIAVKRHRPISDFLLDSLPLPPQPSDAP
        M EEESGEAIRPE PTGRVKKIMK+DKD+ KVNSEALF+VSCAT+LFLKLLAEKSAEVA EKKRKTVKLEHIR+AVKRHR ISDFLLDSLPLP QPSDAP
Subjt:  MAEEESGEAIRPEIPTGRVKKIMKVDKDVCKVNSEALFLVSCATDLFLKLLAEKSAEVATEKKRKTVKLEHIRIAVKRHRPISDFLLDSLPLPPQPSDAP

Query:  AKDESRTRTAADKAAPEGTRRIDDFFRKPAKTTSDENNES
        AKDE+R R   DK AP GTRRIDDFFR+P KTTS E NES
Subjt:  AKDESRTRTAADKAAPEGTRRIDDFFRKPAKTTSDENNES

A0A6J1BRI3 nuclear transcription factor Y subunit C-11.1e-6698.57Show/hide
Query:  MAEEESGEAIRPEIPTGRVKKIMKVDKDVCKVNSEALFLVSCATDLFLKLLAEKSAEVATEKKRKTVKLEHIRIAVKRHRPISDFLLDSLPLPPQPSDAP
        MAEEESGEAIRPEIPTGRVKKIMKVDKDVCKVNSEALFLVSCATDLFLKLLAEKSAEVATEKKRKTVKLEHIRIAVKRHRPISDFLLDSLPLPPQPSDAP
Subjt:  MAEEESGEAIRPEIPTGRVKKIMKVDKDVCKVNSEALFLVSCATDLFLKLLAEKSAEVATEKKRKTVKLEHIRIAVKRHRPISDFLLDSLPLPPQPSDAP

Query:  AKDESRTRTAADKAAPEGTRRIDDFFRKPAKTTSDENNES
        AK+E+RTRTAADKAAPEGTRRIDDFFRKPAKTTSDENNES
Subjt:  AKDESRTRTAADKAAPEGTRRIDDFFRKPAKTTSDENNES

A0A6J1HCT3 DNA polymerase epsilon subunit C1.9e-5381.43Show/hide
Query:  MAEEESGEAIRPEIPTGRVKKIMKVDKDVCKVNSEALFLVSCATDLFLKLLAEKSAEVATEKKRKTVKLEHIRIAVKRHRPISDFLLDSLPLPPQPSDAP
        MAEEE GEAIRPE P GR+KKIMK+DKD+ KVNSEALFLVSCAT+LFL+LLAEKS+EVA EKKRKTVKLEHIRIAVKRH+ I DFLLDSLPLP QPSDAP
Subjt:  MAEEESGEAIRPEIPTGRVKKIMKVDKDVCKVNSEALFLVSCATDLFLKLLAEKSAEVATEKKRKTVKLEHIRIAVKRHRPISDFLLDSLPLPPQPSDAP

Query:  AKDESRTRTAADKAAPEGTRRIDDFFRKPAKTTSDENNES
        AKDE+RTR   DK APEGTRRIDDFFR+P KT S E NE+
Subjt:  AKDESRTRTAADKAAPEGTRRIDDFFRKPAKTTSDENNES

A0A6J1K737 DNA polymerase epsilon subunit C2.9e-5482.86Show/hide
Query:  MAEEESGEAIRPEIPTGRVKKIMKVDKDVCKVNSEALFLVSCATDLFLKLLAEKSAEVATEKKRKTVKLEHIRIAVKRHRPISDFLLDSLPLPPQPSDAP
        MAEEE GEAIRPE P GR+KKIMK+DKD+ KVNSEALFLVSCAT+LFL+LLAEKSAEVA EKKRKTVKLEHIRIAVKRH+ ISDFLLDSLPLP QPSDAP
Subjt:  MAEEESGEAIRPEIPTGRVKKIMKVDKDVCKVNSEALFLVSCATDLFLKLLAEKSAEVATEKKRKTVKLEHIRIAVKRHRPISDFLLDSLPLPPQPSDAP

Query:  AKDESRTRTAADKAAPEGTRRIDDFFRKPAKTTSDENNES
        AKDE+RTR   DK APEGTRRIDDFFR+P KT S E NE+
Subjt:  AKDESRTRTAADKAAPEGTRRIDDFFRKPAKTTSDENNES

SwissProt top hitse value%identityAlignment
A6BLW4 Nuclear transcription factor Y subunit C-22.4e-0537.97Show/hide
Query:  EIPTGRVKKIMKVDKDVCKVNSEALFLVSCATDLFLKLLAEKSAEVATEKKRKTVKLEHIRIAVKRHRPISDFLLDSLP
        ++P  R+KKIMK D+DV  +++EA  L + A +LF+  L  +S   A E KR+T++   +  A+ R   + DFL+D +P
Subjt:  EIPTGRVKKIMKVDKDVCKVNSEALFLVSCATDLFLKLLAEKSAEVATEKKRKTVKLEHIRIAVKRHRPISDFLLDSLP

B0XTT5 NCT transcriptional regulatory complex subunit A1.2e-0431.03Show/hide
Query:  IRPEIPTGRVKKIMKVDKDVCKVNSEALFLVSCATDLFLKLLAEKSAEVATEKKRKTVKLEHIRIAVKRHRPISDFLLDSL-PLPPQPSDAPAKDESRTR
        ++ + P  R+K+IM+ D+DV KV       VS A +LF+  L  K+A+ A ++  K V   H++ AV +   + DFL D +  +P QP+     D+  + 
Subjt:  IRPEIPTGRVKKIMKVDKDVCKVNSEALFLVSCATDLFLKLLAEKSAEVATEKKRKTVKLEHIRIAVKRHRPISDFLLDSL-PLPPQPSDAPAKDESRTR

Query:  TAADKAAPEGTRRIDD
                 G RR  D
Subjt:  TAADKAAPEGTRRIDD

Q4X095 NCT transcriptional regulatory complex subunit A1.2e-0431.03Show/hide
Query:  IRPEIPTGRVKKIMKVDKDVCKVNSEALFLVSCATDLFLKLLAEKSAEVATEKKRKTVKLEHIRIAVKRHRPISDFLLDSL-PLPPQPSDAPAKDESRTR
        ++ + P  R+K+IM+ D+DV KV       VS A +LF+  L  K+A+ A ++  K V   H++ AV +   + DFL D +  +P QP+     D+  + 
Subjt:  IRPEIPTGRVKKIMKVDKDVCKVNSEALFLVSCATDLFLKLLAEKSAEVATEKKRKTVKLEHIRIAVKRHRPISDFLLDSL-PLPPQPSDAPAKDESRTR

Query:  TAADKAAPEGTRRIDD
                 G RR  D
Subjt:  TAADKAAPEGTRRIDD

Q9FMV5 Nuclear transcription factor Y subunit C-41.1e-0540.51Show/hide
Query:  EIPTGRVKKIMKVDKDVCKVNSEALFLVSCATDLFLKLLAEKSAEVATEKKRKTVKLEHIRIAVKRHRPISDFLLDSLP
        ++P  R+KKIMK D+DV  +++EA  L + A +LF+  L  +S   A E KR+T++   I  A+ R   I DFL+D +P
Subjt:  EIPTGRVKKIMKVDKDVCKVNSEALFLVSCATDLFLKLLAEKSAEVATEKKRKTVKLEHIRIAVKRHRPISDFLLDSLP

Q9SMP0 Nuclear transcription factor Y subunit C-11.1e-0540.51Show/hide
Query:  EIPTGRVKKIMKVDKDVCKVNSEALFLVSCATDLFLKLLAEKSAEVATEKKRKTVKLEHIRIAVKRHRPISDFLLDSLP
        ++P  R+KKIMK D+DV  +++EA  L + A +LF+  L  +S   A E KR+T++   I  A+ R   I DFL+D +P
Subjt:  EIPTGRVKKIMKVDKDVCKVNSEALFLVSCATDLFLKLLAEKSAEVATEKKRKTVKLEHIRIAVKRHRPISDFLLDSLP

Arabidopsis top hitse value%identityAlignment
AT3G48590.1 nuclear factor Y, subunit C17.7e-0740.51Show/hide
Query:  EIPTGRVKKIMKVDKDVCKVNSEALFLVSCATDLFLKLLAEKSAEVATEKKRKTVKLEHIRIAVKRHRPISDFLLDSLP
        ++P  R+KKIMK D+DV  +++EA  L + A +LF+  L  +S   A E KR+T++   I  A+ R   I DFL+D +P
Subjt:  EIPTGRVKKIMKVDKDVCKVNSEALFLVSCATDLFLKLLAEKSAEVATEKKRKTVKLEHIRIAVKRHRPISDFLLDSLP

AT5G19490.1 Histone superfamily protein1.1e-0531.31Show/hide
Query:  IRPEIPTGRVKKIMKVDKDVCKVNSEALFLVSCATDLFLKLLAEKSAEVATEKKRKTVKLEHIRIAVKRHRPISDFLLDSLPLPPQPSDAPAKDESRTR
        ++   P  R+KKIM+ D++V K+      LVS A +LFL+ L   + +V   +  KTV   H++  V+    + DFL D++   P    +  +D+S T+
Subjt:  IRPEIPTGRVKKIMKVDKDVCKVNSEALFLVSCATDLFLKLLAEKSAEVATEKKRKTVKLEHIRIAVKRHRPISDFLLDSLPLPPQPSDAPAKDESRTR

AT5G43250.1 nuclear factor Y, subunit C135.1e-3563.24Show/hide
Query:  EEESGEAIRPEIPTGRVKKIMKVDKDVCKVNSEALFLVSCATDLFLKLLAEKSAEVATEKKRKTVKLEHIRIAVKRHRPISDFLLDSLPLPPQPSDAPAK
        EEE G +IRPE P GRVKKIMK+DKD+ K+NSEAL +++ +T+LFL  LAEKSA V  EKKRKTV L+H+RIAVKRH+P SDFLLDSLPLP QP      
Subjt:  EEESGEAIRPEIPTGRVKKIMKVDKDVCKVNSEALFLVSCATDLFLKLLAEKSAEVATEKKRKTVKLEHIRIAVKRHRPISDFLLDSLPLPPQPSDAPAK

Query:  DESRTRTAADK---AAPEGTRRIDDFFRK-PAKTTS
            T++ +DK   A P GTRRIDDFF K  AKT S
Subjt:  DESRTRTAADK---AAPEGTRRIDDFFRK-PAKTTS

AT5G63470.1 nuclear factor Y, subunit C47.7e-0740.51Show/hide
Query:  EIPTGRVKKIMKVDKDVCKVNSEALFLVSCATDLFLKLLAEKSAEVATEKKRKTVKLEHIRIAVKRHRPISDFLLDSLP
        ++P  R+KKIMK D+DV  +++EA  L + A +LF+  L  +S   A E KR+T++   I  A+ R   I DFL+D +P
Subjt:  EIPTGRVKKIMKVDKDVCKVNSEALFLVSCATDLFLKLLAEKSAEVATEKKRKTVKLEHIRIAVKRHRPISDFLLDSLP

AT5G63470.2 nuclear factor Y, subunit C47.7e-0740.51Show/hide
Query:  EIPTGRVKKIMKVDKDVCKVNSEALFLVSCATDLFLKLLAEKSAEVATEKKRKTVKLEHIRIAVKRHRPISDFLLDSLP
        ++P  R+KKIMK D+DV  +++EA  L + A +LF+  L  +S   A E KR+T++   I  A+ R   I DFL+D +P
Subjt:  EIPTGRVKKIMKVDKDVCKVNSEALFLVSCATDLFLKLLAEKSAEVATEKKRKTVKLEHIRIAVKRHRPISDFLLDSLP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCGAAGAAGAGTCCGGGGAGGCTATCCGTCCCGAAATTCCGACCGGACGAGTCAAGAAGATAATGAAGGTGGACAAGGACGTATGCAAAGTGAACTCTGAAGCACT
ATTTCTTGTCTCATGCGCCACCGATCTCTTCCTGAAGCTTCTCGCTGAAAAATCTGCAGAAGTCGCCACGGAGAAGAAACGGAAGACAGTTAAGCTTGAACACATCCGAA
TCGCCGTCAAAAGGCATCGACCGATCAGTGATTTTCTCCTCGATTCGCTTCCTCTTCCACCTCAGCCGTCGGATGCTCCGGCGAAGGACGAGAGTCGCACCCGCACTGCC
GCCGACAAAGCAGCTCCCGAGGGAACCCGTCGAATCGACGATTTCTTTCGCAAGCCAGCGAAGACAACGTCGGATGAGAACAACGAGTCG
mRNA sequenceShow/hide mRNA sequence
ATGGCCGAAGAAGAGTCCGGGGAGGCTATCCGTCCCGAAATTCCGACCGGACGAGTCAAGAAGATAATGAAGGTGGACAAGGACGTATGCAAAGTGAACTCTGAAGCACT
ATTTCTTGTCTCATGCGCCACCGATCTCTTCCTGAAGCTTCTCGCTGAAAAATCTGCAGAAGTCGCCACGGAGAAGAAACGGAAGACAGTTAAGCTTGAACACATCCGAA
TCGCCGTCAAAAGGCATCGACCGATCAGTGATTTTCTCCTCGATTCGCTTCCTCTTCCACCTCAGCCGTCGGATGCTCCGGCGAAGGACGAGAGTCGCACCCGCACTGCC
GCCGACAAAGCAGCTCCCGAGGGAACCCGTCGAATCGACGATTTCTTTCGCAAGCCAGCGAAGACAACGTCGGATGAGAACAACGAGTCG
Protein sequenceShow/hide protein sequence
MAEEESGEAIRPEIPTGRVKKIMKVDKDVCKVNSEALFLVSCATDLFLKLLAEKSAEVATEKKRKTVKLEHIRIAVKRHRPISDFLLDSLPLPPQPSDAPAKDESRTRTA
ADKAAPEGTRRIDDFFRKPAKTTSDENNES