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MS000984 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS000984
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionTranscription and mRNA export factor ENY2
Genome locationscaffold36:630414..632893
RNA-Seq ExpressionMS000984
SyntenyMS000984
Gene Ontology termsGO:0006325 - chromatin organization (biological process)
GO:0006357 - regulation of transcription by RNA polymerase II (biological process)
GO:0006368 - transcription elongation from RNA polymerase II promoter (biological process)
GO:0015031 - protein transport (biological process)
GO:0016578 - histone deubiquitination (biological process)
GO:0016973 - poly(A)+ mRNA export from nucleus (biological process)
GO:0045893 - positive regulation of transcription, DNA-templated (biological process)
GO:0000124 - SAGA complex (cellular component)
GO:0005643 - nuclear pore (cellular component)
GO:0070390 - transcription export complex 2 (cellular component)
GO:0071819 - DUBm complex (cellular component)
GO:0003682 - chromatin binding (molecular function)
GO:0003713 - transcription coactivator activity (molecular function)
InterPro domainsIPR018783 - Transcription factor, enhancer of yellow 2
IPR038212 - Transcription factor EnY2 superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7020143.1 Transcription and mRNA export factor SUS1, partial [Cucurbita argyrosperma subsp. argyrosperma]1.0e-4893.64Show/hide
Query:  RASINRPPTPEAEDDRDQQLTFQETINIKLIESGEKERLKELLRDRLIECGWKDEMKALCRAYVRKKGRNNVSVDDLVQVITPKGRASVPDSVKAELLQR
        R SINRPPTPE EDDR+QQ TFQETINIKLIESGEKERLKELLR+RLIECGWKDEMKALCRAYVRKKGRNNVSVDDLVQVITPKGRASVPDSVKAELLQR
Subjt:  RASINRPPTPEAEDDRDQQLTFQETINIKLIESGEKERLKELLRDRLIECGWKDEMKALCRAYVRKKGRNNVSVDDLVQVITPKGRASVPDSVKAELLQR

Query:  IRSFLGSTAI
        IR+FL STAI
Subjt:  IRSFLGSTAI

XP_011657386.1 transcription and mRNA export factor ENY2 [Cucumis sativus]3.6e-4994.55Show/hide
Query:  RASINRPPTPEAEDDRDQQLTFQETINIKLIESGEKERLKELLRDRLIECGWKDEMKALCRAYVRKKGRNNVSVDDLVQVITPKGRASVPDSVKAELLQR
        RASINRPPTPE EDDR+ Q TFQE+INIKLIESGEKERLKELLR+RLIECGWKDEMKALCRAYVRKKGRNNVSVDDLVQVITPKGRASVPDSVKAELLQR
Subjt:  RASINRPPTPEAEDDRDQQLTFQETINIKLIESGEKERLKELLRDRLIECGWKDEMKALCRAYVRKKGRNNVSVDDLVQVITPKGRASVPDSVKAELLQR

Query:  IRSFLGSTAI
        IRSFLGSTAI
Subjt:  IRSFLGSTAI

XP_022131273.1 transcription and mRNA export factor SUS1 [Momordica charantia]4.5e-5299.09Show/hide
Query:  RASINRPPTPEAEDDRDQQLTFQETINIKLIESGEKERLKELLRDRLIECGWKDEMKALCRAYVRKKGRNNVSVDDLVQVITPKGRASVPDSVKAELLQR
        RASINRPPTPEAEDDRDQQLTFQETINIKLIESGEKERLKELLR+RLIECGWKDEMKALCRAYVRKKGRNNVSVDDLVQVITPKGRASVPDSVKAELLQR
Subjt:  RASINRPPTPEAEDDRDQQLTFQETINIKLIESGEKERLKELLRDRLIECGWKDEMKALCRAYVRKKGRNNVSVDDLVQVITPKGRASVPDSVKAELLQR

Query:  IRSFLGSTAI
        IRSFLGSTAI
Subjt:  IRSFLGSTAI

XP_022951096.1 transcription and mRNA export factor SUS1 [Cucurbita moschata]4.7e-4994.55Show/hide
Query:  RASINRPPTPEAEDDRDQQLTFQETINIKLIESGEKERLKELLRDRLIECGWKDEMKALCRAYVRKKGRNNVSVDDLVQVITPKGRASVPDSVKAELLQR
        R SINRPPTPE EDDR+QQ TFQETINIKLIESGEKERLKELLR+RLIECGWKDEMKALCRAYVRKKGRNNVSVDDLVQVITPKGRASVPDSVKAELLQR
Subjt:  RASINRPPTPEAEDDRDQQLTFQETINIKLIESGEKERLKELLRDRLIECGWKDEMKALCRAYVRKKGRNNVSVDDLVQVITPKGRASVPDSVKAELLQR

Query:  IRSFLGSTAI
        IRSFL STAI
Subjt:  IRSFLGSTAI

XP_023002845.1 transcription and mRNA export factor ENY2 [Cucurbita maxima]1.0e-4893.64Show/hide
Query:  RASINRPPTPEAEDDRDQQLTFQETINIKLIESGEKERLKELLRDRLIECGWKDEMKALCRAYVRKKGRNNVSVDDLVQVITPKGRASVPDSVKAELLQR
        R SINRPPTPE EDDR+QQ TFQETINIKLIESGEKERLKELLR+RLIECGWKDEMKALCRAYVRKKGRNNVSVDDLVQVITPKGRASVPDSVKAELLQR
Subjt:  RASINRPPTPEAEDDRDQQLTFQETINIKLIESGEKERLKELLRDRLIECGWKDEMKALCRAYVRKKGRNNVSVDDLVQVITPKGRASVPDSVKAELLQR

Query:  IRSFLGSTAI
        IR+FL STAI
Subjt:  IRSFLGSTAI

TrEMBL top hitse value%identityAlignment
A0A0A0KIM7 Transcription and mRNA export factor ENY21.7e-4994.55Show/hide
Query:  RASINRPPTPEAEDDRDQQLTFQETINIKLIESGEKERLKELLRDRLIECGWKDEMKALCRAYVRKKGRNNVSVDDLVQVITPKGRASVPDSVKAELLQR
        RASINRPPTPE EDDR+ Q TFQE+INIKLIESGEKERLKELLR+RLIECGWKDEMKALCRAYVRKKGRNNVSVDDLVQVITPKGRASVPDSVKAELLQR
Subjt:  RASINRPPTPEAEDDRDQQLTFQETINIKLIESGEKERLKELLRDRLIECGWKDEMKALCRAYVRKKGRNNVSVDDLVQVITPKGRASVPDSVKAELLQR

Query:  IRSFLGSTAI
        IRSFLGSTAI
Subjt:  IRSFLGSTAI

A0A1S3BDR5 Transcription and mRNA export factor ENY28.6e-4993.64Show/hide
Query:  RASINRPPTPEAEDDRDQQLTFQETINIKLIESGEKERLKELLRDRLIECGWKDEMKALCRAYVRKKGRNNVSVDDLVQVITPKGRASVPDSVKAELLQR
        RASINRPPTPE EDDR+ Q TFQE+INIKLIESGEKERLKELLR+RLIECGWKDEMKALCRAYVRKKGRNNVSVDDLVQVITPKGRASVPDSVKAELLQR
Subjt:  RASINRPPTPEAEDDRDQQLTFQETINIKLIESGEKERLKELLRDRLIECGWKDEMKALCRAYVRKKGRNNVSVDDLVQVITPKGRASVPDSVKAELLQR

Query:  IRSFLGSTAI
        IRSFL STAI
Subjt:  IRSFLGSTAI

A0A6J1BSW0 Transcription and mRNA export factor ENY22.2e-5299.09Show/hide
Query:  RASINRPPTPEAEDDRDQQLTFQETINIKLIESGEKERLKELLRDRLIECGWKDEMKALCRAYVRKKGRNNVSVDDLVQVITPKGRASVPDSVKAELLQR
        RASINRPPTPEAEDDRDQQLTFQETINIKLIESGEKERLKELLR+RLIECGWKDEMKALCRAYVRKKGRNNVSVDDLVQVITPKGRASVPDSVKAELLQR
Subjt:  RASINRPPTPEAEDDRDQQLTFQETINIKLIESGEKERLKELLRDRLIECGWKDEMKALCRAYVRKKGRNNVSVDDLVQVITPKGRASVPDSVKAELLQR

Query:  IRSFLGSTAI
        IRSFLGSTAI
Subjt:  IRSFLGSTAI

A0A6J1GGQ4 Transcription and mRNA export factor ENY22.3e-4994.55Show/hide
Query:  RASINRPPTPEAEDDRDQQLTFQETINIKLIESGEKERLKELLRDRLIECGWKDEMKALCRAYVRKKGRNNVSVDDLVQVITPKGRASVPDSVKAELLQR
        R SINRPPTPE EDDR+QQ TFQETINIKLIESGEKERLKELLR+RLIECGWKDEMKALCRAYVRKKGRNNVSVDDLVQVITPKGRASVPDSVKAELLQR
Subjt:  RASINRPPTPEAEDDRDQQLTFQETINIKLIESGEKERLKELLRDRLIECGWKDEMKALCRAYVRKKGRNNVSVDDLVQVITPKGRASVPDSVKAELLQR

Query:  IRSFLGSTAI
        IRSFL STAI
Subjt:  IRSFLGSTAI

A0A6J1KQ41 Transcription and mRNA export factor ENY25.0e-4993.64Show/hide
Query:  RASINRPPTPEAEDDRDQQLTFQETINIKLIESGEKERLKELLRDRLIECGWKDEMKALCRAYVRKKGRNNVSVDDLVQVITPKGRASVPDSVKAELLQR
        R SINRPPTPE EDDR+QQ TFQETINIKLIESGEKERLKELLR+RLIECGWKDEMKALCRAYVRKKGRNNVSVDDLVQVITPKGRASVPDSVKAELLQR
Subjt:  RASINRPPTPEAEDDRDQQLTFQETINIKLIESGEKERLKELLRDRLIECGWKDEMKALCRAYVRKKGRNNVSVDDLVQVITPKGRASVPDSVKAELLQR

Query:  IRSFLGSTAI
        IR+FL STAI
Subjt:  IRSFLGSTAI

SwissProt top hitse value%identityAlignment
B5FZ63 Transcription and mRNA export factor ENY24.4e-2664.21Show/hide
Query:  DRDQQLTFQETINIKLIESGEKERLKELLRDRLIECGWKDEMKALCRAYVRKKGRNNVSVDDLVQVITPKGRASVPDSVKAELLQRIRSFLGSTA
        ++D Q+  + TIN KLIE+GE+ERLKELLR +LIECGWKD++KA C+  +++KG  +V+VDDLV  ITPKGRA VPDSVK ELLQRIR+FL   A
Subjt:  DRDQQLTFQETINIKLIESGEKERLKELLRDRLIECGWKDEMKALCRAYVRKKGRNNVSVDDLVQVITPKGRASVPDSVKAELLQRIRSFLGSTA

Q3ZBJ0 Transcription and mRNA export factor ENY21.3e-2563.16Show/hide
Query:  DRDQQLTFQETINIKLIESGEKERLKELLRDRLIECGWKDEMKALCRAYVRKKGRNNVSVDDLVQVITPKGRASVPDSVKAELLQRIRSFLGSTA
        ++D Q+  +  IN KLIE+GE+ERLKELLR +LIECGWKD++KA C+  +++KG  +V+VDDLV  ITPKGRA VPDSVK ELLQRIR+FL   A
Subjt:  DRDQQLTFQETINIKLIESGEKERLKELLRDRLIECGWKDEMKALCRAYVRKKGRNNVSVDDLVQVITPKGRASVPDSVKAELLQRIRSFLGSTA

Q6DH42 Transcription and mRNA export factor ENY21.3e-2570Show/hide
Query:  INIKLIESGEKERLKELLRDRLIECGWKDEMKALCRAYVRKKGRNNVSVDDLVQVITPKGRASVPDSVKAELLQRIRSFL
        IN KLIE GE+ERLKELLR +LIECGW+D++KALC+  +++KG  NV+V+DLV  +TPKGRA VPDSVK ELLQRIR+FL
Subjt:  INIKLIESGEKERLKELLRDRLIECGWKDEMKALCRAYVRKKGRNNVSVDDLVQVITPKGRASVPDSVKAELLQRIRSFL

Q6NQ54 Transcription and mRNA export factor ENY24.0e-3563.39Show/hide
Query:  SINRPPTPEAEDDRD----QQLTFQETINIKLIESGEKERLKELLRDRLIECGWKDEMKALCRAYVRKKGRNNVSVDDLVQVITPKGRASVPDSVKAELL
        S+NRPPTP+ +D  D     ++T +E IN+KL+ESGEKE L EL+RDRL+ECGWKDEM+  CR +V+KKGR +V+VD+L++VITPKGRASVPDSVKAELL
Subjt:  SINRPPTPEAEDDRD----QQLTFQETINIKLIESGEKERLKELLRDRLIECGWKDEMKALCRAYVRKKGRNNVSVDDLVQVITPKGRASVPDSVKAELL

Query:  QRIRSFLGSTAI
         RI++F+ S A+
Subjt:  QRIRSFLGSTAI

Q9NPA8 Transcription and mRNA export factor ENY21.3e-2563.16Show/hide
Query:  DRDQQLTFQETINIKLIESGEKERLKELLRDRLIECGWKDEMKALCRAYVRKKGRNNVSVDDLVQVITPKGRASVPDSVKAELLQRIRSFLGSTA
        ++D Q+  +  IN KLIE+GE+ERLKELLR +LIECGWKD++KA C+  +++KG  +V+VDDLV  ITPKGRA VPDSVK ELLQRIR+FL   A
Subjt:  DRDQQLTFQETINIKLIESGEKERLKELLRDRLIECGWKDEMKALCRAYVRKKGRNNVSVDDLVQVITPKGRASVPDSVKAELLQRIRSFLGSTA

Arabidopsis top hitse value%identityAlignment
AT3G27100.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor, enhancer of yellow 2 (InterPro:IPR018783); Has 288 Blast hits to 288 proteins in 94 species: Archae - 0; Bacteria - 0; Metazoa - 197; Fungi - 20; Plants - 51; Viruses - 0; Other Eukaryotes - 20 (source: NCBI BLink).2.8e-3663.39Show/hide
Query:  SINRPPTPEAEDDRD----QQLTFQETINIKLIESGEKERLKELLRDRLIECGWKDEMKALCRAYVRKKGRNNVSVDDLVQVITPKGRASVPDSVKAELL
        S+NRPPTP+ +D  D     ++T +E IN+KL+ESGEKE L EL+RDRL+ECGWKDEM+  CR +V+KKGR +V+VD+L++VITPKGRASVPDSVKAELL
Subjt:  SINRPPTPEAEDDRD----QQLTFQETINIKLIESGEKERLKELLRDRLIECGWKDEMKALCRAYVRKKGRNNVSVDDLVQVITPKGRASVPDSVKAELL

Query:  QRIRSFLGSTAI
         RI++F+ S A+
Subjt:  QRIRSFLGSTAI

AT3G27100.2 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor, enhancer of yellow 2 (InterPro:IPR018783); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).3.1e-2759.34Show/hide
Query:  SINRPPTPEAEDDRD----QQLTFQETINIKLIESGEKERLKELLRDRLIECGWKDEMKALCRAYVRKKGRNNVSVDDLVQVITPKGRASV
        S+NRPPTP+ +D  D     ++T +E IN+KL+ESGEKE L EL+RDRL+ECGWKDEM+  CR +V+KKGR +V+VD+L++VITPKGR  +
Subjt:  SINRPPTPEAEDDRD----QQLTFQETINIKLIESGEKERLKELLRDRLIECGWKDEMKALCRAYVRKKGRNNVSVDDLVQVITPKGRASV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
AGGAGGGCTTCCATTAATCGACCTCCGACGCCCGAAGCCGAGGATGATCGAGATCAGCAGCTTACTTTTCAAGAAACAATCAATATCAAGCTGATTGAAAGTGGCGAAAA
AGAGCGGCTCAAAGAGCTCTTGAGAGACAGGCTTATCGAATGCGGATGGAAAGATGAAATGAAAGCCCTTTGCAGGGCATATGTAAGGAAGAAGGGAAGGAACAATGTCA
GTGTCGACGACCTTGTGCAGGTCATTACTCCGAAAGGCAGAGCCTCAGTTCCCGATTCAGTGAAAGCTGAGCTGCTGCAGCGGATCCGATCTTTCCTAGGATCAACAGCC
ATC
mRNA sequenceShow/hide mRNA sequence
AGGAGGGCTTCCATTAATCGACCTCCGACGCCCGAAGCCGAGGATGATCGAGATCAGCAGCTTACTTTTCAAGAAACAATCAATATCAAGCTGATTGAAAGTGGCGAAAA
AGAGCGGCTCAAAGAGCTCTTGAGAGACAGGCTTATCGAATGCGGATGGAAAGATGAAATGAAAGCCCTTTGCAGGGCATATGTAAGGAAGAAGGGAAGGAACAATGTCA
GTGTCGACGACCTTGTGCAGGTCATTACTCCGAAAGGCAGAGCCTCAGTTCCCGATTCAGTGAAAGCTGAGCTGCTGCAGCGGATCCGATCTTTCCTAGGATCAACAGCC
ATC
Protein sequenceShow/hide protein sequence
RRASINRPPTPEAEDDRDQQLTFQETINIKLIESGEKERLKELLRDRLIECGWKDEMKALCRAYVRKKGRNNVSVDDLVQVITPKGRASVPDSVKAELLQRIRSFLGSTA
I