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MS001005 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS001005
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionPentatricopeptide repeat
Genome locationscaffold36:816063..816410
RNA-Seq ExpressionMS001005
SyntenyMS001005
Gene Ontology termsGO:0005515 - protein binding (molecular function)
InterPro domainsIPR002885 - Pentatricopeptide repeat
IPR011990 - Tetratricopeptide-like helical domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0064759.1 putative pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa]1.1e-5387.93Show/hide
Query:  NDLIPSTYSLVIKWLCNKGKVRQAYVVFDEMHKRGLEADNSAHSSLIYGLLARGRKREGYRIMGRIENPDLGVYHALIKGLLRLRRANEATQVFREMIER
        NDLIPSTY LVI+WLCNKGKVRQA++VFDEMHKRGLE DNS HSSLIYGLLARGR+RE Y IM RIENPDL VYHALIKGLL+L+RANEATQVFREMIER
Subjt:  NDLIPSTYSLVIKWLCNKGKVRQAYVVFDEMHKRGLEADNSAHSSLIYGLLARGRKREGYRIMGRIENPDLGVYHALIKGLLRLRRANEATQVFREMIER

Query:  GCEPIMHTYVMLLQGH
        GCEPIMHTY+MLLQGH
Subjt:  GCEPIMHTYVMLLQGH

XP_008445460.1 PREDICTED: putative pentatricopeptide repeat-containing protein At1g26500 [Cucumis melo]1.1e-5387.93Show/hide
Query:  NDLIPSTYSLVIKWLCNKGKVRQAYVVFDEMHKRGLEADNSAHSSLIYGLLARGRKREGYRIMGRIENPDLGVYHALIKGLLRLRRANEATQVFREMIER
        NDLIPSTY LVI+WLCNKGKVRQA++VFDEMHKRGLE DNS HSSLIYGLLARGR+RE Y IM RIENPDL VYHALIKGLL+L+RANEATQVFREMIER
Subjt:  NDLIPSTYSLVIKWLCNKGKVRQAYVVFDEMHKRGLEADNSAHSSLIYGLLARGRKREGYRIMGRIENPDLGVYHALIKGLLRLRRANEATQVFREMIER

Query:  GCEPIMHTYVMLLQGH
        GCEPIMHTY+MLLQGH
Subjt:  GCEPIMHTYVMLLQGH

XP_022131400.1 putative pentatricopeptide repeat-containing protein At1g26500 [Momordica charantia]9.8e-5896.55Show/hide
Query:  NDLIPSTYSLVIKWLCNKGKVRQAYVVFDEMHKRGLEADNSAHSSLIYGLLARGRKREGYRIMGRIENPDLGVYHALIKGLLRLRRANEATQVFREMIER
        NDLIPSTYSLV KWLCNKGKVRQAYVVFDEMHKRGLE DNSAHSSLIYGLLARGR+REGYRIM RIENPDLGVYHALIKGLLRLRRANEATQVFREMIER
Subjt:  NDLIPSTYSLVIKWLCNKGKVRQAYVVFDEMHKRGLEADNSAHSSLIYGLLARGRKREGYRIMGRIENPDLGVYHALIKGLLRLRRANEATQVFREMIER

Query:  GCEPIMHTYVMLLQGH
        GCEPIMHTYVMLLQGH
Subjt:  GCEPIMHTYVMLLQGH

XP_022951802.1 putative pentatricopeptide repeat-containing protein At1g26500 isoform X1 [Cucurbita moschata]4.3e-5389.66Show/hide
Query:  NDLIPSTYSLVIKWLCNKGKVRQAYVVFDEMHKRGLEADNSAHSSLIYGLLARGRKREGYRIMGRIENPDLGVYHALIKGLLRLRRANEATQVFREMIER
        NDLIPSTYSLVIKWLCNKGK+RQAY VFDEM KRG EADNSAHSSLIYG+LARGR+RE Y IMGRIENPDL VYHA+IKGLLRLRRA+EATQVFR MIER
Subjt:  NDLIPSTYSLVIKWLCNKGKVRQAYVVFDEMHKRGLEADNSAHSSLIYGLLARGRKREGYRIMGRIENPDLGVYHALIKGLLRLRRANEATQVFREMIER

Query:  GCEPIMHTYVMLLQGH
        GCEPIMHTYVMLLQGH
Subjt:  GCEPIMHTYVMLLQGH

XP_023538207.1 putative pentatricopeptide repeat-containing protein At1g26500 [Cucurbita pepo subsp. pepo]4.3e-5389.66Show/hide
Query:  NDLIPSTYSLVIKWLCNKGKVRQAYVVFDEMHKRGLEADNSAHSSLIYGLLARGRKREGYRIMGRIENPDLGVYHALIKGLLRLRRANEATQVFREMIER
        NDLIPSTYSLVIKWLCNKGK+RQAY VFDEM KRG EADNSAHSSLIYG+LARGR+RE Y IMGRIENPDL VYHA+IKGLLRLRRA+EATQVFR MIER
Subjt:  NDLIPSTYSLVIKWLCNKGKVRQAYVVFDEMHKRGLEADNSAHSSLIYGLLARGRKREGYRIMGRIENPDLGVYHALIKGLLRLRRANEATQVFREMIER

Query:  GCEPIMHTYVMLLQGH
        GCEPIMHTYVMLLQGH
Subjt:  GCEPIMHTYVMLLQGH

TrEMBL top hitse value%identityAlignment
A0A1S3BDH4 putative pentatricopeptide repeat-containing protein At1g265005.4e-5487.93Show/hide
Query:  NDLIPSTYSLVIKWLCNKGKVRQAYVVFDEMHKRGLEADNSAHSSLIYGLLARGRKREGYRIMGRIENPDLGVYHALIKGLLRLRRANEATQVFREMIER
        NDLIPSTY LVI+WLCNKGKVRQA++VFDEMHKRGLE DNS HSSLIYGLLARGR+RE Y IM RIENPDL VYHALIKGLL+L+RANEATQVFREMIER
Subjt:  NDLIPSTYSLVIKWLCNKGKVRQAYVVFDEMHKRGLEADNSAHSSLIYGLLARGRKREGYRIMGRIENPDLGVYHALIKGLLRLRRANEATQVFREMIER

Query:  GCEPIMHTYVMLLQGH
        GCEPIMHTY+MLLQGH
Subjt:  GCEPIMHTYVMLLQGH

A0A5A7VH10 Putative pentatricopeptide repeat-containing protein5.4e-5487.93Show/hide
Query:  NDLIPSTYSLVIKWLCNKGKVRQAYVVFDEMHKRGLEADNSAHSSLIYGLLARGRKREGYRIMGRIENPDLGVYHALIKGLLRLRRANEATQVFREMIER
        NDLIPSTY LVI+WLCNKGKVRQA++VFDEMHKRGLE DNS HSSLIYGLLARGR+RE Y IM RIENPDL VYHALIKGLL+L+RANEATQVFREMIER
Subjt:  NDLIPSTYSLVIKWLCNKGKVRQAYVVFDEMHKRGLEADNSAHSSLIYGLLARGRKREGYRIMGRIENPDLGVYHALIKGLLRLRRANEATQVFREMIER

Query:  GCEPIMHTYVMLLQGH
        GCEPIMHTY+MLLQGH
Subjt:  GCEPIMHTYVMLLQGH

A0A6J1BPL8 putative pentatricopeptide repeat-containing protein At1g265004.7e-5896.55Show/hide
Query:  NDLIPSTYSLVIKWLCNKGKVRQAYVVFDEMHKRGLEADNSAHSSLIYGLLARGRKREGYRIMGRIENPDLGVYHALIKGLLRLRRANEATQVFREMIER
        NDLIPSTYSLV KWLCNKGKVRQAYVVFDEMHKRGLE DNSAHSSLIYGLLARGR+REGYRIM RIENPDLGVYHALIKGLLRLRRANEATQVFREMIER
Subjt:  NDLIPSTYSLVIKWLCNKGKVRQAYVVFDEMHKRGLEADNSAHSSLIYGLLARGRKREGYRIMGRIENPDLGVYHALIKGLLRLRRANEATQVFREMIER

Query:  GCEPIMHTYVMLLQGH
        GCEPIMHTYVMLLQGH
Subjt:  GCEPIMHTYVMLLQGH

A0A6J1GIN7 putative pentatricopeptide repeat-containing protein At1g26500 isoform X12.1e-5389.66Show/hide
Query:  NDLIPSTYSLVIKWLCNKGKVRQAYVVFDEMHKRGLEADNSAHSSLIYGLLARGRKREGYRIMGRIENPDLGVYHALIKGLLRLRRANEATQVFREMIER
        NDLIPSTYSLVIKWLCNKGK+RQAY VFDEM KRG EADNSAHSSLIYG+LARGR+RE Y IMGRIENPDL VYHA+IKGLLRLRRA+EATQVFR MIER
Subjt:  NDLIPSTYSLVIKWLCNKGKVRQAYVVFDEMHKRGLEADNSAHSSLIYGLLARGRKREGYRIMGRIENPDLGVYHALIKGLLRLRRANEATQVFREMIER

Query:  GCEPIMHTYVMLLQGH
        GCEPIMHTYVMLLQGH
Subjt:  GCEPIMHTYVMLLQGH

A0A6J1GIR3 putative pentatricopeptide repeat-containing protein At1g26500 isoform X22.1e-5389.66Show/hide
Query:  NDLIPSTYSLVIKWLCNKGKVRQAYVVFDEMHKRGLEADNSAHSSLIYGLLARGRKREGYRIMGRIENPDLGVYHALIKGLLRLRRANEATQVFREMIER
        NDLIPSTYSLVIKWLCNKGK+RQAY VFDEM KRG EADNSAHSSLIYG+LARGR+RE Y IMGRIENPDL VYHA+IKGLLRLRRA+EATQVFR MIER
Subjt:  NDLIPSTYSLVIKWLCNKGKVRQAYVVFDEMHKRGLEADNSAHSSLIYGLLARGRKREGYRIMGRIENPDLGVYHALIKGLLRLRRANEATQVFREMIER

Query:  GCEPIMHTYVMLLQGH
        GCEPIMHTYVMLLQGH
Subjt:  GCEPIMHTYVMLLQGH

SwissProt top hitse value%identityAlignment
Q8VZE4 Pentatricopeptide repeat-containing protein At4g015704.5e-1336.28Show/hide
Query:  TYSLVIKWLCNKGKVRQAYVVFDEMHKRGLEADNSAHSSLIYGLLARGRKREGYRIMGRIEN----PDLGVYHALIKGLLRLRRANEATQVFREMIERGC
        TY+ +I  LC  GK + A +V+DE+   G E DNS +  LI G     R  +  RI G ++     PD  VY+ L+ G L+ R+  EA Q+F +M++ G 
Subjt:  TYSLVIKWLCNKGKVRQAYVVFDEMHKRGLEADNSAHSSLIYGLLARGRKREGYRIMGRIEN----PDLGVYHALIKGLLRLRRANEATQVFREMIERGC

Query:  EPIMHTYVMLLQG
             TY +L+ G
Subjt:  EPIMHTYVMLLQG

Q9FZD4 Putative pentatricopeptide repeat-containing protein At1g265002.7e-3456.52Show/hide
Query:  DLIPSTYSLVIKWLCNKGKVRQAYVVFDEMHKRGLEADNSAHSSLIYGLLARGRKREGYRIMGRIENPDLGVYHALIKGLLRLRRANEATQVFREMIERG
        DL    Y ++I WLC  G++  A  VFDEM +RG+  DN   +SLIYGLL + R  E Y ++  +ENPD+ +YH LIKGL++++RA+EAT+VFR+MI+RG
Subjt:  DLIPSTYSLVIKWLCNKGKVRQAYVVFDEMHKRGLEADNSAHSSLIYGLLARGRKREGYRIMGRIENPDLGVYHALIKGLLRLRRANEATQVFREMIERG

Query:  CEPIMHTYVMLLQGH
        CEPIMHTY+MLLQGH
Subjt:  CEPIMHTYVMLLQGH

Q9LUD6 Pentatricopeptide repeat-containing protein At3g14580, mitochondrial1.9e-1132.74Show/hide
Query:  TYSLVIKWLCNKGKVRQAYVVFDEMHKRGLEADNSAHSSLIYGLLARGRKREGYRIMGRIE----NPDLGVYHALIKGLLRLRRANEATQVFREMIERGC
        T+S +I+  CNKGK  +A+ + + M K  +E D    + LI GL  +GR  EG  ++ R++     P+ G Y  ++ GLL  +R  EA ++  +MI  G 
Subjt:  TYSLVIKWLCNKGKVRQAYVVFDEMHKRGLEADNSAHSSLIYGLLARGRKREGYRIMGRIE----NPDLGVYHALIKGLLRLRRANEATQVFREMIERGC

Query:  EPIMHTYVMLLQG
         P   +Y  ++ G
Subjt:  EPIMHTYVMLLQG

Q9M9X9 Pentatricopeptide repeat-containing protein At1g06710, mitochondrial8.4e-1232.17Show/hide
Query:  STYSLVIKWLCNKGKVRQAYVVFDEMHKRGLEADNSAHSSLIYGLLARG---RKREGYRIMGRIE-NPDLGVYHALIKGLLRLRRANEATQVFREMIERG
        STYS V+ +LCN  K+  A+++F+EM + GL AD   ++ ++      G   + R+ +  M  +   P++  Y ALI   L+ ++ + A ++F  M+  G
Subjt:  STYSLVIKWLCNKGKVRQAYVVFDEMHKRGLEADNSAHSSLIYGLLARG---RKREGYRIMGRIE-NPDLGVYHALIKGLLRLRRANEATQVFREMIERG

Query:  CEPIMHTYVMLLQGH
        C P + TY  L+ GH
Subjt:  CEPIMHTYVMLLQGH

Q9SI78 Pentatricopeptide repeat-containing protein At1g627208.4e-1232.23Show/hide
Query:  DLIPS--TYSLVIKWLCNKGKVRQAYVVFDEMHKRGLEADNSAHSSLIYGLLARGRKREGYRIMGRIEN----PDLGVYHALIKGLLRLRRANEATQVFR
        D++P+  T++ VI     +GK  +A  +++EM +R ++ D   ++SLI GL   GR  E  +++  +      PD+  Y+ LI G  + +R +E T++FR
Subjt:  DLIPS--TYSLVIKWLCNKGKVRQAYVVFDEMHKRGLEADNSAHSSLIYGLLARGRKREGYRIMGRIEN----PDLGVYHALIKGLLRLRRANEATQVFR

Query:  EMIERGCEPIMHTYVMLLQGH
        EM +RG      TY  ++QG+
Subjt:  EMIERGCEPIMHTYVMLLQGH

Arabidopsis top hitse value%identityAlignment
AT1G06710.1 Tetratricopeptide repeat (TPR)-like superfamily protein6.0e-1332.17Show/hide
Query:  STYSLVIKWLCNKGKVRQAYVVFDEMHKRGLEADNSAHSSLIYGLLARG---RKREGYRIMGRIE-NPDLGVYHALIKGLLRLRRANEATQVFREMIERG
        STYS V+ +LCN  K+  A+++F+EM + GL AD   ++ ++      G   + R+ +  M  +   P++  Y ALI   L+ ++ + A ++F  M+  G
Subjt:  STYSLVIKWLCNKGKVRQAYVVFDEMHKRGLEADNSAHSSLIYGLLARG---RKREGYRIMGRIE-NPDLGVYHALIKGLLRLRRANEATQVFREMIERG

Query:  CEPIMHTYVMLLQGH
        C P + TY  L+ GH
Subjt:  CEPIMHTYVMLLQGH

AT1G26500.1 Pentatricopeptide repeat (PPR) superfamily protein1.9e-3556.52Show/hide
Query:  DLIPSTYSLVIKWLCNKGKVRQAYVVFDEMHKRGLEADNSAHSSLIYGLLARGRKREGYRIMGRIENPDLGVYHALIKGLLRLRRANEATQVFREMIERG
        DL    Y ++I WLC  G++  A  VFDEM +RG+  DN   +SLIYGLL + R  E Y ++  +ENPD+ +YH LIKGL++++RA+EAT+VFR+MI+RG
Subjt:  DLIPSTYSLVIKWLCNKGKVRQAYVVFDEMHKRGLEADNSAHSSLIYGLLARGRKREGYRIMGRIENPDLGVYHALIKGLLRLRRANEATQVFREMIERG

Query:  CEPIMHTYVMLLQGH
        CEPIMHTY+MLLQGH
Subjt:  CEPIMHTYVMLLQGH

AT1G62720.1 Pentatricopeptide repeat (PPR-like) superfamily protein6.0e-1332.23Show/hide
Query:  DLIPS--TYSLVIKWLCNKGKVRQAYVVFDEMHKRGLEADNSAHSSLIYGLLARGRKREGYRIMGRIEN----PDLGVYHALIKGLLRLRRANEATQVFR
        D++P+  T++ VI     +GK  +A  +++EM +R ++ D   ++SLI GL   GR  E  +++  +      PD+  Y+ LI G  + +R +E T++FR
Subjt:  DLIPS--TYSLVIKWLCNKGKVRQAYVVFDEMHKRGLEADNSAHSSLIYGLLARGRKREGYRIMGRIEN----PDLGVYHALIKGLLRLRRANEATQVFR

Query:  EMIERGCEPIMHTYVMLLQGH
        EM +RG      TY  ++QG+
Subjt:  EMIERGCEPIMHTYVMLLQGH

AT3G14580.1 Pentatricopeptide repeat (PPR) superfamily protein1.3e-1232.74Show/hide
Query:  TYSLVIKWLCNKGKVRQAYVVFDEMHKRGLEADNSAHSSLIYGLLARGRKREGYRIMGRIE----NPDLGVYHALIKGLLRLRRANEATQVFREMIERGC
        T+S +I+  CNKGK  +A+ + + M K  +E D    + LI GL  +GR  EG  ++ R++     P+ G Y  ++ GLL  +R  EA ++  +MI  G 
Subjt:  TYSLVIKWLCNKGKVRQAYVVFDEMHKRGLEADNSAHSSLIYGLLARGRKREGYRIMGRIE----NPDLGVYHALIKGLLRLRRANEATQVFREMIERGC

Query:  EPIMHTYVMLLQG
         P   +Y  ++ G
Subjt:  EPIMHTYVMLLQG

AT4G01570.1 Tetratricopeptide repeat (TPR)-like superfamily protein3.2e-1436.28Show/hide
Query:  TYSLVIKWLCNKGKVRQAYVVFDEMHKRGLEADNSAHSSLIYGLLARGRKREGYRIMGRIEN----PDLGVYHALIKGLLRLRRANEATQVFREMIERGC
        TY+ +I  LC  GK + A +V+DE+   G E DNS +  LI G     R  +  RI G ++     PD  VY+ L+ G L+ R+  EA Q+F +M++ G 
Subjt:  TYSLVIKWLCNKGKVRQAYVVFDEMHKRGLEADNSAHSSLIYGLLARGRKREGYRIMGRIEN----PDLGVYHALIKGLLRLRRANEATQVFREMIERGC

Query:  EPIMHTYVMLLQG
             TY +L+ G
Subjt:  EPIMHTYVMLLQG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
AATGATCTGATTCCTTCAACTTACAGTCTTGTGATCAAATGGTTGTGTAACAAAGGCAAGGTGAGGCAAGCATATGTGGTGTTCGACGAAATGCATAAGAGAGGACTTGA
AGCTGATAATTCTGCACATTCTTCACTGATTTATGGGCTTTTGGCGAGAGGGAGGAAGAGAGAGGGTTACAGAATCATGGGGAGGATAGAGAATCCTGATTTGGGTGTTT
ACCACGCTTTGATCAAGGGGCTTTTGAGGTTGAGGAGGGCAAATGAAGCCACCCAAGTTTTCAGGGAAATGATAGAAAGAGGGTGCGAGCCTATAATGCATACATATGTT
ATGTTGTTGCAGGGGCAT
mRNA sequenceShow/hide mRNA sequence
AATGATCTGATTCCTTCAACTTACAGTCTTGTGATCAAATGGTTGTGTAACAAAGGCAAGGTGAGGCAAGCATATGTGGTGTTCGACGAAATGCATAAGAGAGGACTTGA
AGCTGATAATTCTGCACATTCTTCACTGATTTATGGGCTTTTGGCGAGAGGGAGGAAGAGAGAGGGTTACAGAATCATGGGGAGGATAGAGAATCCTGATTTGGGTGTTT
ACCACGCTTTGATCAAGGGGCTTTTGAGGTTGAGGAGGGCAAATGAAGCCACCCAAGTTTTCAGGGAAATGATAGAAAGAGGGTGCGAGCCTATAATGCATACATATGTT
ATGTTGTTGCAGGGGCAT
Protein sequenceShow/hide protein sequence
NDLIPSTYSLVIKWLCNKGKVRQAYVVFDEMHKRGLEADNSAHSSLIYGLLARGRKREGYRIMGRIENPDLGVYHALIKGLLRLRRANEATQVFREMIERGCEPIMHTYV
MLLQGH