CuGenDBv2

Gene ID	MS001007
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Cytochrome c oxidase subunit 2
Genome location	scaffold36:824054..824311
RNA-Seq Expression	MS001007
Synteny	MS001007
Gene Ontology terms	GO:0006355 - regulation of transcription, DNA-templated (biological process) GO:0022900 - electron transport chain (biological process) GO:1902600 - proton transmembrane transport (biological process) GO:0005743 - mitochondrial inner membrane (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0070469 - respirasome (cellular component) GO:0003677 - DNA binding (molecular function) GO:0004129 - cytochrome-c oxidase activity (molecular function) GO:0005507 - copper ion binding (molecular function)
InterPro domains	IPR011759 - Cytochrome C oxidase subunit II, transmembrane domain IPR036257 - Cytochrome C oxidase subunit II, transmembrane domain superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

AEN56105.1 cytochrome c oxidase subunit 2 [Cucumis melo subsp. melo]

4.0e-32

89.66

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Query:  AEPWQLGSQDAATPMMQGIINLHHDIFFFLILI-LFVSRILVCALWHFHY-KNKIPQRIVHGTTIEIHWTIFCSIIPIFIAIPSFAL
        AEPWQLGSQDAATPMMQGII+LHHDIFFFLILI +FVSRILV ALWHFHY K KIPQRIVHGTTIEI WTIF SIIP+FIAIPSFAL
Subjt:  AEPWQLGSQDAATPMMQGIINLHHDIFFFLILI-LFVSRILVCALWHFHY-KNKIPQRIVHGTTIEIHWTIFCSIIPIFIAIPSFAL

QLA48212.1 cytochrome c oxidase subunit 2 [Medinilla magnifica]

1.8e-32

90.8

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Query:  AEPWQLGSQDAATPMMQGIINLHHDIFFFLILIL-FVSRILVCALWHFHY-KNKIPQRIVHGTTIEIHWTIFCSIIPIFIAIPSFAL
        AEPWQLGSQDAATPMMQGII+LHHDIFFFLILIL FVSRILV ALWHFHY KN IPQRIVHGTTIEI WTIF SIIP+FIAIPSFAL
Subjt:  AEPWQLGSQDAATPMMQGIINLHHDIFFFLILIL-FVSRILVCALWHFHY-KNKIPQRIVHGTTIEIHWTIFCSIIPIFIAIPSFAL

WP_131747038.1 cytochrome c oxidase subunit II [Candidatus Frankia meridionalis]

1.8e-32

90.8

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Query:  AEPWQLGSQDAATPMMQGIINLHHDIFFFLILIL-FVSRILVCALWHFHY-KNKIPQRIVHGTTIEIHWTIFCSIIPIFIAIPSFAL
        AEPWQLGSQDAATPMMQGII+LHHDIFFFLILIL FVSRILV ALWHFHY KN IPQRIVHGTTIEI WTIF SIIP+FIAIPSFAL
Subjt:  AEPWQLGSQDAATPMMQGIINLHHDIFFFLILIL-FVSRILVCALWHFHY-KNKIPQRIVHGTTIEIHWTIFCSIIPIFIAIPSFAL

XP_023553509.1 uncharacterized protein LOC111810906 isoform X1 [Cucurbita pepo subsp. pepo]

4.0e-32

88.51

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Query:  AEPWQLGSQDAATPMMQGIINLHHDIFFFLILI-LFVSRILVCALWHFHYK-NKIPQRIVHGTTIEIHWTIFCSIIPIFIAIPSFAL
        AEPWQLGSQDAATPMMQGII+LHHDIFFFLIL+ +FVSRILV ALWHFHYK N+IPQRIVHGTTIEI WTIF SIIP+FIAIPSFAL
Subjt:  AEPWQLGSQDAATPMMQGIINLHHDIFFFLILI-LFVSRILVCALWHFHYK-NKIPQRIVHGTTIEIHWTIFCSIIPIFIAIPSFAL

YP_009913658.1 cytochrome c oxidase subunit 2 [Luffa acutangula]

2.3e-32

89.66

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Query:  AEPWQLGSQDAATPMMQGIINLHHDIFFFLILI-LFVSRILVCALWHFHY-KNKIPQRIVHGTTIEIHWTIFCSIIPIFIAIPSFAL
        AEPWQLGSQDAATPMMQGII+LHHDIFFFLILI +FVSRILV ALWHFHY KN+IPQRIVHGTTIEI WTIF SIIP+FIAIPSFAL
Subjt:  AEPWQLGSQDAATPMMQGIINLHHDIFFFLILI-LFVSRILVCALWHFHY-KNKIPQRIVHGTTIEIHWTIFCSIIPIFIAIPSFAL

TrEMBL top hits

e value

%identity

Alignment

A0A3S9JIH4 Cytochrome c oxidase subunit 2

1.9e-32

89.66

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Query:  AEPWQLGSQDAATPMMQGIINLHHDIFFFLILI-LFVSRILVCALWHFHY-KNKIPQRIVHGTTIEIHWTIFCSIIPIFIAIPSFAL
        AEPWQLGSQDAATPMMQGII+LHHDIFFFLILI +FVSRILV ALWHFHY K KIPQRIVHGTTIEI WTIF SIIP+FIAIPSFAL
Subjt:  AEPWQLGSQDAATPMMQGIINLHHDIFFFLILI-LFVSRILVCALWHFHY-KNKIPQRIVHGTTIEIHWTIFCSIIPIFIAIPSFAL

A0A5D3E0Y2 Cytochrome c oxidase subunit 2

1.9e-32

87.36

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Query:  AEPWQLGSQDAATPMMQGIINLHHDIFFFLILI-LFVSRILVCALWHFHY-KNKIPQRIVHGTTIEIHWTIFCSIIPIFIAIPSFAL
        AEPW+LGSQDAATPMMQGII+LHHDIFFFLILI +FVSRILVCALWHF+Y K K+PQRIVHGTTIEI WTIF SIIP+FIAIPSFAL
Subjt:  AEPWQLGSQDAATPMMQGIINLHHDIFFFLILI-LFVSRILVCALWHFHY-KNKIPQRIVHGTTIEIHWTIFCSIIPIFIAIPSFAL

A0A7D5IPG7 Cytochrome c oxidase subunit 2

8.6e-33

90.8

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Query:  AEPWQLGSQDAATPMMQGIINLHHDIFFFLILIL-FVSRILVCALWHFHY-KNKIPQRIVHGTTIEIHWTIFCSIIPIFIAIPSFAL
        AEPWQLGSQDAATPMMQGII+LHHDIFFFLILIL FVSRILV ALWHFHY KN IPQRIVHGTTIEI WTIF SIIP+FIAIPSFAL
Subjt:  AEPWQLGSQDAATPMMQGIINLHHDIFFFLILIL-FVSRILVCALWHFHY-KNKIPQRIVHGTTIEIHWTIFCSIIPIFIAIPSFAL

A0A7D6C0E1 Cytochrome c oxidase subunit 2

1.1e-32

89.66

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Query:  AEPWQLGSQDAATPMMQGIINLHHDIFFFLILI-LFVSRILVCALWHFHY-KNKIPQRIVHGTTIEIHWTIFCSIIPIFIAIPSFAL
        AEPWQLGSQDAATPMMQGII+LHHDIFFFLILI +FVSRILV ALWHFHY KN+IPQRIVHGTTIEI WTIF SIIP+FIAIPSFAL
Subjt:  AEPWQLGSQDAATPMMQGIINLHHDIFFFLILI-LFVSRILVCALWHFHY-KNKIPQRIVHGTTIEIHWTIFCSIIPIFIAIPSFAL

G3EU21 Cytochrome c oxidase subunit 2

1.9e-32

89.66

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Query:  AEPWQLGSQDAATPMMQGIINLHHDIFFFLILI-LFVSRILVCALWHFHY-KNKIPQRIVHGTTIEIHWTIFCSIIPIFIAIPSFAL
        AEPWQLGSQDAATPMMQGII+LHHDIFFFLILI +FVSRILV ALWHFHY K KIPQRIVHGTTIEI WTIF SIIP+FIAIPSFAL
Subjt:  AEPWQLGSQDAATPMMQGIINLHHDIFFFLILI-LFVSRILVCALWHFHY-KNKIPQRIVHGTTIEIHWTIFCSIIPIFIAIPSFAL

SwissProt top hits

e value

%identity

Alignment

P04373 Cytochrome c oxidase subunit 2

4.6e-31

83.91

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Query:  AEPWQLGSQDAATPMMQGIINLHHDIFFFLILIL-FVSRILVCALWHFHYK-NKIPQRIVHGTTIEIHWTIFCSIIPIFIAIPSFAL
        AEPWQLGSQDAATPMMQGII+LHHDIFFFLILIL FVSR+LV ALWHF+ + N IPQRIVHGTTIEI  TIF S+IP+FIAIPSFAL
Subjt:  AEPWQLGSQDAATPMMQGIINLHHDIFFFLILIL-FVSRILVCALWHFHYK-NKIPQRIVHGTTIEIHWTIFCSIIPIFIAIPSFAL

P05491 Cytochrome c oxidase subunit 2

4.9e-33

88.51

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Query:  AEPWQLGSQDAATPMMQGIINLHHDIFFFLILIL-FVSRILVCALWHFHY-KNKIPQRIVHGTTIEIHWTIFCSIIPIFIAIPSFAL
        AEPWQLG QDAATPMMQGII+LHHDIFFFLILIL FVSRILV ALWHFHY KN IPQRIVHGTTIEI  TIF SIIP+FIAIPSFAL
Subjt:  AEPWQLGSQDAATPMMQGIINLHHDIFFFLILIL-FVSRILVCALWHFHY-KNKIPQRIVHGTTIEIHWTIFCSIIPIFIAIPSFAL

P08744 Cytochrome c oxidase subunit 2

4.9e-33

88.51

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Query:  AEPWQLGSQDAATPMMQGIINLHHDIFFFLILIL-FVSRILVCALWHFHY-KNKIPQRIVHGTTIEIHWTIFCSIIPIFIAIPSFAL
        AEPWQLG QDAATPMMQGII+LHHDIFFFLILIL FVSRILV ALWHFHY KN IPQRIVHGTTIEI  TIF SIIP+FIAIPSFAL
Subjt:  AEPWQLGSQDAATPMMQGIINLHHDIFFFLILIL-FVSRILVCALWHFHY-KNKIPQRIVHGTTIEIHWTIFCSIIPIFIAIPSFAL

P27168 Cytochrome c oxidase subunit 2

1.1e-32

88.51

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Query:  AEPWQLGSQDAATPMMQGIINLHHDIFFFLILIL-FVSRILVCALWHFH-YKNKIPQRIVHGTTIEIHWTIFCSIIPIFIAIPSFAL
        AEPWQLGSQDAATPMMQGII+LHHDIFFFLILIL FVSRILV ALWHFH  KN IPQRIVHGTTIEI  TIF SIIP+FIAIPSFAL
Subjt:  AEPWQLGSQDAATPMMQGIINLHHDIFFFLILIL-FVSRILVCALWHFH-YKNKIPQRIVHGTTIEIHWTIFCSIIPIFIAIPSFAL

P93285 Cytochrome c oxidase subunit 2

2.0e-31

85.06

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Query:  AEPWQLGSQDAATPMMQGIINLHHDIFFFLILIL-FVSRILVCALWHFHY-KNKIPQRIVHGTTIEIHWTIFCSIIPIFIAIPSFAL
        AEPWQLG QDAATP+MQGII+LHHDIFFFLILIL FV  ILV ALWHFHY KN IPQRIVHGTTIEI WTIF SII +FIAIPSFAL
Subjt:  AEPWQLGSQDAATPMMQGIINLHHDIFFFLILIL-FVSRILVCALWHFHY-KNKIPQRIVHGTTIEIHWTIFCSIIPIFIAIPSFAL

Arabidopsis top hits

e value

%identity

Alignment

AT2G07695.1 Cytochrome C oxidase subunit II-like, transmembrane domain

6.7e-30

81.61

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Query:  AEPWQLGSQDAATPMMQGIINLHHDIFFFLILIL-FVSRILVCALWHFHY-KNKIPQRIVHGTTIEIHWTIFCSIIPIFIAIPSFAL
        AEPWQLGSQDAATP+MQGII+LHHDIFFFLILIL FV  ILV ALWHFHY KN IPQRIVHGTTIEI  TIF   I IFI  PSFAL
Subjt:  AEPWQLGSQDAATPMMQGIINLHHDIFFFLILIL-FVSRILVCALWHFHY-KNKIPQRIVHGTTIEIHWTIFCSIIPIFIAIPSFAL

ATMG00160.1 cytochrome oxidase 2

7.2e-32

85.06

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Query:  AEPWQLGSQDAATPMMQGIINLHHDIFFFLILIL-FVSRILVCALWHFHY-KNKIPQRIVHGTTIEIHWTIFCSIIPIFIAIPSFAL
        AEPWQLGSQDAATP+MQGII+LHHDIFFFLILIL FV  ILV ALWHFHY KN IPQRIVHGTTIEI  TIF SII +FIAIPSFAL
Subjt:  AEPWQLGSQDAATPMMQGIINLHHDIFFFLILIL-FVSRILVCALWHFHY-KNKIPQRIVHGTTIEIHWTIFCSIIPIFIAIPSFAL

ATMG01280.1 Cytochrome C oxidase subunit II-like, transmembrane domain

6.7e-30

81.61

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Query:  AEPWQLGSQDAATPMMQGIINLHHDIFFFLILIL-FVSRILVCALWHFHY-KNKIPQRIVHGTTIEIHWTIFCSIIPIFIAIPSFAL
        AEPWQLGSQDAATP+MQGII+LHHDIFFFLILIL FV  ILV ALWHFHY KN IPQRIVHGTTIEI  TIF   I IFI  PSFAL
Subjt:  AEPWQLGSQDAATPMMQGIINLHHDIFFFLILIL-FVSRILVCALWHFHY-KNKIPQRIVHGTTIEIHWTIFCSIIPIFIAIPSFAL

Sequences

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CDS sequence

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GCGGAACCATGGCAATTAGGATCTCAAGACGCAGCAACACCTATGATGCAAGGAATAATAAACTTACATCACGATATCTTTTTCTTCCTCATTCTGATTTTGTTCGTATC
ACGGATCTTGGTTTGCGCTTTATGGCATTTCCACTATAAAAATAAAATACCGCAAAGGATTGTTCATGGAACTACTATCGAGATTCATTGGACCATTTTTTGTAGTATCA
TCCCAATATTCATTGCTATACCATCATTTGCTCTC

mRNA sequence

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Protein sequence

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AEPWQLGSQDAATPMMQGIINLHHDIFFFLILILFVSRILVCALWHFHYKNKIPQRIVHGTTIEIHWTIFCSIIPIFIAIPSFAL

MS001007 (gene) of Bitter gourd (TR) v1 genome