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MS001015 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS001015
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionprotein SPIRAL1-like 2
Genome locationscaffold36:863889..865279
RNA-Seq ExpressionMS001015
SyntenyMS001015
Gene Ontology termsGO:0043622 - cortical microtubule organization (biological process)
GO:0010005 - cortical microtubule, transverse to long axis (cellular component)
InterPro domainsIPR039613 - Protein SPIRAL1-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004144171.1 protein SPIRAL1-like 1 [Cucumis sativus]2.0e-4283.06Show/hide
Query:  GRGVSSGGGQSSLGYLFGSGEAPNAGARAPARAPNGG-QAPPPSNEGKTVSKP----PAAAASPPADVTKQIPAGIHSSSSNNYLRADGQNTGNFITDRP
        GRGVSSGGGQSSLGYLFG G+APNAG      AP GG QAPPP +E KT+SKP    PAA ASPPAD++KQIPAGIHSSSSNNYLRADGQNTGNFITDRP
Subjt:  GRGVSSGGGQSSLGYLFGSGEAPNAGARAPARAPNGG-QAPPPSNEGKTVSKP----PAAAASPPADVTKQIPAGIHSSSSNNYLRADGQNTGNFITDRP

Query:  STKVHAAPGGGSSLDYLFGGAGGK
        STKVHAAPGGGSSLDYLFGGAGGK
Subjt:  STKVHAAPGGGSSLDYLFGGAGGK

XP_008445444.1 PREDICTED: protein SPIRAL1-like 1 [Cucumis melo]7.5e-4587.1Show/hide
Query:  GRGVSSGGGQSSLGYLFGSGEAPNAGARAPARAPNGG-QAPPPSNEGKTVSKP----PAAAASPPADVTKQIPAGIHSSSSNNYLRADGQNTGNFITDRP
        GRGVSSGGGQSSLGYLFG G+APNAG      AP GG QAPPPSNEGKTVSKP    PAA ASPPAD+TKQIPAGIHSSSSNNYLRADGQNTGNFITDRP
Subjt:  GRGVSSGGGQSSLGYLFGSGEAPNAGARAPARAPNGG-QAPPPSNEGKTVSKP----PAAAASPPADVTKQIPAGIHSSSSNNYLRADGQNTGNFITDRP

Query:  STKVHAAPGGGSSLDYLFGGAGGK
        STKVHAAPGGGSSLDYLFGGAGGK
Subjt:  STKVHAAPGGGSSLDYLFGGAGGK

XP_022132002.1 protein SPIRAL1-like 2 [Momordica charantia]3.6e-55100Show/hide
Query:  GRGVSSGGGQSSLGYLFGSGEAPNAGARAPARAPNGGQAPPPSNEGKTVSKPPAAAASPPADVTKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKVH
        GRGVSSGGGQSSLGYLFGSGEAPNAGARAPARAPNGGQAPPPSNEGKTVSKPPAAAASPPADVTKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKVH
Subjt:  GRGVSSGGGQSSLGYLFGSGEAPNAGARAPARAPNGGQAPPPSNEGKTVSKPPAAAASPPADVTKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKVH

Query:  AAPGGGSSLDYLFGGAGGK
        AAPGGGSSLDYLFGGAGGK
Subjt:  AAPGGGSSLDYLFGGAGGK

XP_022961880.1 protein SPIRAL1-like 2 [Cucurbita moschata]3.7e-4487.8Show/hide
Query:  GRGVSSGGGQSSLGYLFGSGEAPNAGARAPARAPNGGQAPPPSNEGKTVSKP----PAAAASPPADVTKQIPAGIHSSSSNNYLRADGQNTGNFITDRPS
        GRGVSSGGGQSSLGYLFGSGEAPNAG      AP GGQA PPSNEGK VSKP    PAA ASPPAD TKQIPAGIHSSSSNNYLRADGQNTGNFITDRPS
Subjt:  GRGVSSGGGQSSLGYLFGSGEAPNAGARAPARAPNGGQAPPPSNEGKTVSKP----PAAAASPPADVTKQIPAGIHSSSSNNYLRADGQNTGNFITDRPS

Query:  TKVHAAPGGGSSLDYLFGGAGGK
        TKVHAAPGGGSSLDYLFGGAGGK
Subjt:  TKVHAAPGGGSSLDYLFGGAGGK

XP_038886245.1 protein SPIRAL1-like 1 [Benincasa hispida]2.8e-4487.1Show/hide
Query:  GRGVSSGGGQSSLGYLFGSGEAPNAGARAPARAPNGG-QAPPPSNEGKTVSKP----PAAAASPPADVTKQIPAGIHSSSSNNYLRADGQNTGNFITDRP
        GRGVSSGGGQSSLGYLFG G+APNAG      AP GG QAPPP NEGKTVSKP    PAA ASPPADVTKQIPAGIHSSSSNNYLRADGQNTGNFITDRP
Subjt:  GRGVSSGGGQSSLGYLFGSGEAPNAGARAPARAPNGG-QAPPPSNEGKTVSKP----PAAAASPPADVTKQIPAGIHSSSSNNYLRADGQNTGNFITDRP

Query:  STKVHAAPGGGSSLDYLFGGAGGK
        STKVHAAPGGGSSLDYLFGGAGGK
Subjt:  STKVHAAPGGGSSLDYLFGGAGGK

TrEMBL top hitse value%identityAlignment
A0A1S3BCR3 protein SPIRAL1-like 13.6e-4587.1Show/hide
Query:  GRGVSSGGGQSSLGYLFGSGEAPNAGARAPARAPNGG-QAPPPSNEGKTVSKP----PAAAASPPADVTKQIPAGIHSSSSNNYLRADGQNTGNFITDRP
        GRGVSSGGGQSSLGYLFG G+APNAG      AP GG QAPPPSNEGKTVSKP    PAA ASPPAD+TKQIPAGIHSSSSNNYLRADGQNTGNFITDRP
Subjt:  GRGVSSGGGQSSLGYLFGSGEAPNAGARAPARAPNGG-QAPPPSNEGKTVSKP----PAAAASPPADVTKQIPAGIHSSSSNNYLRADGQNTGNFITDRP

Query:  STKVHAAPGGGSSLDYLFGGAGGK
        STKVHAAPGGGSSLDYLFGGAGGK
Subjt:  STKVHAAPGGGSSLDYLFGGAGGK

A0A5A7VC71 Protein SPIRAL1-like 13.6e-4587.1Show/hide
Query:  GRGVSSGGGQSSLGYLFGSGEAPNAGARAPARAPNGG-QAPPPSNEGKTVSKP----PAAAASPPADVTKQIPAGIHSSSSNNYLRADGQNTGNFITDRP
        GRGVSSGGGQSSLGYLFG G+APNAG      AP GG QAPPPSNEGKTVSKP    PAA ASPPAD+TKQIPAGIHSSSSNNYLRADGQNTGNFITDRP
Subjt:  GRGVSSGGGQSSLGYLFGSGEAPNAGARAPARAPNGG-QAPPPSNEGKTVSKP----PAAAASPPADVTKQIPAGIHSSSSNNYLRADGQNTGNFITDRP

Query:  STKVHAAPGGGSSLDYLFGGAGGK
        STKVHAAPGGGSSLDYLFGGAGGK
Subjt:  STKVHAAPGGGSSLDYLFGGAGGK

A0A6J1BSM5 protein SPIRAL1-like 21.7e-55100Show/hide
Query:  GRGVSSGGGQSSLGYLFGSGEAPNAGARAPARAPNGGQAPPPSNEGKTVSKPPAAAASPPADVTKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKVH
        GRGVSSGGGQSSLGYLFGSGEAPNAGARAPARAPNGGQAPPPSNEGKTVSKPPAAAASPPADVTKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKVH
Subjt:  GRGVSSGGGQSSLGYLFGSGEAPNAGARAPARAPNGGQAPPPSNEGKTVSKPPAAAASPPADVTKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKVH

Query:  AAPGGGSSLDYLFGGAGGK
        AAPGGGSSLDYLFGGAGGK
Subjt:  AAPGGGSSLDYLFGGAGGK

A0A6J1HDG7 protein SPIRAL1-like 21.8e-4487.8Show/hide
Query:  GRGVSSGGGQSSLGYLFGSGEAPNAGARAPARAPNGGQAPPPSNEGKTVSKP----PAAAASPPADVTKQIPAGIHSSSSNNYLRADGQNTGNFITDRPS
        GRGVSSGGGQSSLGYLFGSGEAPNAG      AP GGQA PPSNEGK VSKP    PAA ASPPAD TKQIPAGIHSSSSNNYLRADGQNTGNFITDRPS
Subjt:  GRGVSSGGGQSSLGYLFGSGEAPNAGARAPARAPNGGQAPPPSNEGKTVSKP----PAAAASPPADVTKQIPAGIHSSSSNNYLRADGQNTGNFITDRPS

Query:  TKVHAAPGGGSSLDYLFGGAGGK
        TKVHAAPGGGSSLDYLFGGAGGK
Subjt:  TKVHAAPGGGSSLDYLFGGAGGK

A0A6J1K972 protein SPIRAL1-like 21.8e-4487.8Show/hide
Query:  GRGVSSGGGQSSLGYLFGSGEAPNAGARAPARAPNGGQAPPPSNEGKTVSKP----PAAAASPPADVTKQIPAGIHSSSSNNYLRADGQNTGNFITDRPS
        GRGVSSGGGQSSLGYLFGSGEAPNAG      AP GGQA PPSNEGK VSKP    PAA ASPPAD TKQIPAGIHSSSSNNYLRADGQNTGNFITDRPS
Subjt:  GRGVSSGGGQSSLGYLFGSGEAPNAGARAPARAPNGGQAPPPSNEGKTVSKP----PAAAASPPADVTKQIPAGIHSSSSNNYLRADGQNTGNFITDRPS

Query:  TKVHAAPGGGSSLDYLFGGAGGK
        TKVHAAPGGGSSLDYLFGGAGGK
Subjt:  TKVHAAPGGGSSLDYLFGGAGGK

SwissProt top hitse value%identityAlignment
B3H4F1 Protein SPIRAL1-like 14.9e-3167.23Show/hide
Query:  GRGVSSGGGQSSLGYLFGSGEAPNAGARAPARAPNGGQAPPPSNEGKTVSKPPAA--AASPPADVTKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTK
        GRGVS GGGQSSLGYLFGSGEAP          P    AP PS+E   +S  P+    A+   +VTKQIPAGI+ SS+NNY+RADGQNTGNF+TDRPSTK
Subjt:  GRGVSSGGGQSSLGYLFGSGEAPNAGARAPARAPNGGQAPPPSNEGKTVSKPPAA--AASPPADVTKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTK

Query:  VHAAPGGGSSLDYLFGGAG
        VHAAPGGGSSLDYLFGG G
Subjt:  VHAAPGGGSSLDYLFGGAG

Q2QQ99 Protein SPIRAL1-like 32.3e-2560.87Show/hide
Query:  GRGVSSGGGQSSLGYLFGSGEAPNAGARAPARAPNGGQAPPPSNEGKTVSKPPAAAASPPADVTKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKVH
        GRGVSSGGGQSSLGYLFG GEAP +     A  P   Q P PS+                A+  K+IPAGI SS +NNY+RA+GQN GNF+TDRPSTKV 
Subjt:  GRGVSSGGGQSSLGYLFGSGEAPNAGARAPARAPNGGQAPPPSNEGKTVSKPPAAAASPPADVTKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKVH

Query:  AAPGGGSSLDYLFGG
        AAPGGGSSLDYLF G
Subjt:  AAPGGGSSLDYLFGG

Q2R0W8 Protein SPIRAL1-like 21.6e-2663.79Show/hide
Query:  GRGVSSGGGQSSLGYLFGSGEAPNAGARAPARAPNGGQAPPPSNEGKTVSKPPAAAASP-PADVTKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKV
        GRGVSSGGGQSSLGYLFG GE   A    PA A      P P  +        AAAASP  A+  K+IPAGI S+ +NNY RA GQN GNF+TDRPSTKV
Subjt:  GRGVSSGGGQSSLGYLFGSGEAPNAGARAPARAPNGGQAPPPSNEGKTVSKPPAAAASP-PADVTKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKV

Query:  HAAPGGGSSLDYLFGG
        HAAPGGGSSL YLFGG
Subjt:  HAAPGGGSSLDYLFGG

Q7Y1L9 Protein SPIRAL1-like 11.1e-2766.38Show/hide
Query:  RGVSSGGGQSSLGYLFGSGEAPNAGAR-APARAPNGGQAPPPSNEGKTVSKPPAAAASPPADVTKQIPAGIHSS-SSNNYLRADGQNTGNFITDRPSTKV
        RG S+GGGQSSLGYLFG  EAP   A+ APA AP    AP P+     V+ P    +   AD TKQIPAGI  S S+NNY RADGQNTGNF+TDRPSTKV
Subjt:  RGVSSGGGQSSLGYLFGSGEAPNAGAR-APARAPNGGQAPPPSNEGKTVSKPPAAAASPPADVTKQIPAGIHSS-SSNNYLRADGQNTGNFITDRPSTKV

Query:  HAAPGGGSSLDYLFGG
        HAAPGGGSSL YLFGG
Subjt:  HAAPGGGSSLDYLFGG

Q9LE54 Protein SPIRAL1-like 21.2e-2964.1Show/hide
Query:  GRGVSSGGGQSSLGYLFGSGEAPNAGA--RAPARAPNGGQAPPPSNEGKTVSKPPAAAASPPADVTKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTK
        GRGVS+GGGQSSLGYLFGSGEAP   A  + PA   +   APP             AAA+   D  KQ+PAG++S+S+NNY+RA+GQNTGNFITDRPSTK
Subjt:  GRGVSSGGGQSSLGYLFGSGEAPNAGA--RAPARAPNGGQAPPPSNEGKTVSKPPAAAASPPADVTKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTK

Query:  VHAAPGGGSSLDYLFGG
        VH+APGGGSSLDYLFGG
Subjt:  VHAAPGGGSSLDYLFGG

Arabidopsis top hitse value%identityAlignment
AT1G26355.1 SPIRAL1-like13.5e-3267.23Show/hide
Query:  GRGVSSGGGQSSLGYLFGSGEAPNAGARAPARAPNGGQAPPPSNEGKTVSKPPAA--AASPPADVTKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTK
        GRGVS GGGQSSLGYLFGSGEAP          P    AP PS+E   +S  P+    A+   +VTKQIPAGI+ SS+NNY+RADGQNTGNF+TDRPSTK
Subjt:  GRGVSSGGGQSSLGYLFGSGEAPNAGARAPARAPNGGQAPPPSNEGKTVSKPPAA--AASPPADVTKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTK

Query:  VHAAPGGGSSLDYLFGGAG
        VHAAPGGGSSLDYLFGG G
Subjt:  VHAAPGGGSSLDYLFGGAG

AT1G69230.1 SPIRAL1-like28.5e-3164.1Show/hide
Query:  GRGVSSGGGQSSLGYLFGSGEAPNAGA--RAPARAPNGGQAPPPSNEGKTVSKPPAAAASPPADVTKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTK
        GRGVS+GGGQSSLGYLFGSGEAP   A  + PA   +   APP             AAA+   D  KQ+PAG++S+S+NNY+RA+GQNTGNFITDRPSTK
Subjt:  GRGVSSGGGQSSLGYLFGSGEAPNAGA--RAPARAPNGGQAPPPSNEGKTVSKPPAAAASPPADVTKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTK

Query:  VHAAPGGGSSLDYLFGG
        VH+APGGGSSLDYLFGG
Subjt:  VHAAPGGGSSLDYLFGG

AT1G69230.2 SPIRAL1-like28.5e-3164.1Show/hide
Query:  GRGVSSGGGQSSLGYLFGSGEAPNAGA--RAPARAPNGGQAPPPSNEGKTVSKPPAAAASPPADVTKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTK
        GRGVS+GGGQSSLGYLFGSGEAP   A  + PA   +   APP             AAA+   D  KQ+PAG++S+S+NNY+RA+GQNTGNFITDRPSTK
Subjt:  GRGVSSGGGQSSLGYLFGSGEAPNAGA--RAPARAPNGGQAPPPSNEGKTVSKPPAAAASPPADVTKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTK

Query:  VHAAPGGGSSLDYLFGG
        VH+APGGGSSLDYLFGG
Subjt:  VHAAPGGGSSLDYLFGG

AT2G03680.1 spiral18.6e-2359.32Show/hide
Query:  GRGVSSGGGQSSLGYLFGSGEAPNAGARAPARAP---NGGQAPPPSNEGKTVSKPPAAAASPPADVTKQIPAGIHSSSSNNYLRADGQNTGNFITDRPST
        GRG S GGGQSSL YLFG          AP  AP   N G APP +    T +   A  +  PA++ KQIPAGI  +  NNY RA+GQNTGNF+TDRPST
Subjt:  GRGVSSGGGQSSLGYLFGSGEAPNAGARAPARAP---NGGQAPPPSNEGKTVSKPPAAAASPPADVTKQIPAGIHSSSSNNYLRADGQNTGNFITDRPST

Query:  KVHAAPGGGSSLDYLFGG
        KVHAAPGGGSSLDYLF G
Subjt:  KVHAAPGGGSSLDYLFGG

AT2G03680.2 spiral18.6e-2359.32Show/hide
Query:  GRGVSSGGGQSSLGYLFGSGEAPNAGARAPARAP---NGGQAPPPSNEGKTVSKPPAAAASPPADVTKQIPAGIHSSSSNNYLRADGQNTGNFITDRPST
        GRG S GGGQSSL YLFG          AP  AP   N G APP +    T +   A  +  PA++ KQIPAGI  +  NNY RA+GQNTGNF+TDRPST
Subjt:  GRGVSSGGGQSSLGYLFGSGEAPNAGARAPARAP---NGGQAPPPSNEGKTVSKPPAAAASPPADVTKQIPAGIHSSSSNNYLRADGQNTGNFITDRPST

Query:  KVHAAPGGGSSLDYLFGG
        KVHAAPGGGSSLDYLF G
Subjt:  KVHAAPGGGSSLDYLFGG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GGCCGTGGAGTTAGCAGTGGTGGGGGGCAGAGCTCACTGGGGTATCTGTTTGGTAGTGGAGAAGCTCCAAATGCAGGTGCCCGTGCTCCTGCCCGTGCCCCTAATGGTGG
CCAAGCACCACCACCTTCTAATGAAGGGAAGACTGTATCGAAACCTCCTGCTGCTGCTGCTTCACCACCTGCAGATGTCACCAAGCAGATTCCGGCTGGTATTCATAGTA
GCTCCTCAAACAACTATTTGAGGGCAGACGGTCAGAACACTGGCAATTTCATAACGGATCGGCCTTCAACCAAGGTGCACGCAGCCCCAGGCGGTGGATCGTCTCTGGAT
TATCTGTTTGGTGGTGCTGGTGGAAAA
mRNA sequenceShow/hide mRNA sequence
GGCCGTGGAGTTAGCAGTGGTGGGGGGCAGAGCTCACTGGGGTATCTGTTTGGTAGTGGAGAAGCTCCAAATGCAGGTGCCCGTGCTCCTGCCCGTGCCCCTAATGGTGG
CCAAGCACCACCACCTTCTAATGAAGGGAAGACTGTATCGAAACCTCCTGCTGCTGCTGCTTCACCACCTGCAGATGTCACCAAGCAGATTCCGGCTGGTATTCATAGTA
GCTCCTCAAACAACTATTTGAGGGCAGACGGTCAGAACACTGGCAATTTCATAACGGATCGGCCTTCAACCAAGGTGCACGCAGCCCCAGGCGGTGGATCGTCTCTGGAT
TATCTGTTTGGTGGTGCTGGTGGAAAA
Protein sequenceShow/hide protein sequence
GRGVSSGGGQSSLGYLFGSGEAPNAGARAPARAPNGGQAPPPSNEGKTVSKPPAAAASPPADVTKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKVHAAPGGGSSLD
YLFGGAGGK