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MS001031 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS001031
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionRNase H domain-containing protein
Genome locationscaffold36:968214..968566
RNA-Seq ExpressionMS001031
SyntenyMS001031
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
RYR05308.1 hypothetical protein Ahy_B06g085174 [Arachis hypogaea]4.4e-0530Show/hide
Query:  RNSVLNGKQLMPVDQKCTWISSYATTYKQLQVDQSLRPAMQRSSYRQPMGWNPPTDNFLKLNVDAACRPNYS-GFGLIIRDSSGSIMAAKSQVVPVSFSP
        RNS++  ++ + ++++     S    + Q Q+ +  R       +     W  P D+ LK+NVDAA   N++ G G+++RD+ G IMAA S ++P    P
Subjt:  RNSVLNGKQLMPVDQKCTWISSYATTYKQLQVDQSLRPAMQRSSYRQPMGWNPPTDNFLKLNVDAACRPNYS-GFGLIIRDSSGSIMAAKSQVVPVSFSP

XP_022131661.1 uncharacterized protein LOC111004786 [Momordica charantia]6.7e-1444.14Show/hide
Query:  DRNSVLNGKQLMPVDQKCTWISSYATTYKQLQVDQSLRPAMQRSSYRQP-MGWNPPTDNFLKLNVDAACRPNYSGFGLIIRDSSGSIMAAKSQVVPVSFS
        DRNS  +G  +     +C WISSY   Y Q Q ++ + P  Q+SS   P   W PP D+ +K+N DAACR   +G GLIIRD  G ++ AKS  +P+  +
Subjt:  DRNSVLNGKQLMPVDQKCTWISSYATTYKQLQVDQSLRPAMQRSSYRQP-MGWNPPTDNFLKLNVDAACRPNYSGFGLIIRDSSGSIMAAKSQVVPVSFS

Query:  PL-AEIKVIIE
        PL AEI+ I+E
Subjt:  PL-AEIKVIIE

XP_022158377.1 uncharacterized protein LOC111024874 [Momordica charantia]8.7e-1444.55Show/hide
Query:  DRNSVLNGKQLMPVDQKCTWISSYATTYKQLQVDQSLRPAMQRSSYRQPMGWNPPTDNFLKLNVDAACRPNYSGFGLIIRDSSGSIMAAKSQVVPVSFSP
        DRNS+++GKQ+ PV+ KC W++ +  ++ Q Q+  +  P  Q +       W P +   LKLN DAACR   + FG IIRDSS S++AA S  VP   SP
Subjt:  DRNSVLNGKQLMPVDQKCTWISSYATTYKQLQVDQSLRPAMQRSSYRQPMGWNPPTDNFLKLNVDAACRPNYSGFGLIIRDSSGSIMAAKSQVVPVSFSP

Query:  -LAEIKVIIE
         LAEI+ I+E
Subjt:  -LAEIKVIIE

XP_030479133.1 uncharacterized protein LOC115696372 [Cannabis sativa]1.7e-0435.79Show/hide
Query:  ADRNSVLNGKQLMPVDQKCTWISSYATTYKQLQVDQSLRP-AMQRSSYRQPMGWNPPTDNFLKLNVDAACRPNYS--GFGLIIRDSSGSIMAAKS
        +DRN+ ++GK++    Q  T   +Y   Y+   +  ++ P A  R+S      W PP +N  KLNVDAA   + S  G G+I+R+S+G + AA S
Subjt:  ADRNSVLNGKQLMPVDQKCTWISSYATTYKQLQVDQSLRP-AMQRSSYRQPMGWNPPTDNFLKLNVDAACRPNYS--GFGLIIRDSSGSIMAAKS

XP_030502555.1 uncharacterized protein LOC115717715 [Cannabis sativa]9.7e-0535.79Show/hide
Query:  ADRNSVLNGKQLMPVDQKCTWISSYATTYKQLQVDQSLRPAMQRSSYRQPMGWNPPTDNFLKLNVDAACRPNYS--GFGLIIRDSSGSIMAAKSQ
        +DRN+ ++GKQL       +   +Y   +  +Q+ Q+     + ++    + W PP +  LK+NVDAA   + S  G G+IIRDSSGS++AA S+
Subjt:  ADRNSVLNGKQLMPVDQKCTWISSYATTYKQLQVDQSLRPAMQRSSYRQPMGWNPPTDNFLKLNVDAACRPNYS--GFGLIIRDSSGSIMAAKSQ

TrEMBL top hitse value%identityAlignment
A0A444YTS5 RNase H domain-containing protein2.1e-0530Show/hide
Query:  RNSVLNGKQLMPVDQKCTWISSYATTYKQLQVDQSLRPAMQRSSYRQPMGWNPPTDNFLKLNVDAACRPNYS-GFGLIIRDSSGSIMAAKSQVVPVSFSP
        RNS++  ++ + ++++     S    + Q Q+ +  R       +     W  P D+ LK+NVDAA   N++ G G+++RD+ G IMAA S ++P    P
Subjt:  RNSVLNGKQLMPVDQKCTWISSYATTYKQLQVDQSLRPAMQRSSYRQPMGWNPPTDNFLKLNVDAACRPNYS-GFGLIIRDSSGSIMAAKSQVVPVSFSP

A0A6J1BQ49 uncharacterized protein LOC1110047863.2e-1444.14Show/hide
Query:  DRNSVLNGKQLMPVDQKCTWISSYATTYKQLQVDQSLRPAMQRSSYRQP-MGWNPPTDNFLKLNVDAACRPNYSGFGLIIRDSSGSIMAAKSQVVPVSFS
        DRNS  +G  +     +C WISSY   Y Q Q ++ + P  Q+SS   P   W PP D+ +K+N DAACR   +G GLIIRD  G ++ AKS  +P+  +
Subjt:  DRNSVLNGKQLMPVDQKCTWISSYATTYKQLQVDQSLRPAMQRSSYRQP-MGWNPPTDNFLKLNVDAACRPNYSGFGLIIRDSSGSIMAAKSQVVPVSFS

Query:  PL-AEIKVIIE
        PL AEI+ I+E
Subjt:  PL-AEIKVIIE

A0A6J1DX30 uncharacterized protein LOC1110248744.2e-1444.55Show/hide
Query:  DRNSVLNGKQLMPVDQKCTWISSYATTYKQLQVDQSLRPAMQRSSYRQPMGWNPPTDNFLKLNVDAACRPNYSGFGLIIRDSSGSIMAAKSQVVPVSFSP
        DRNS+++GKQ+ PV+ KC W++ +  ++ Q Q+  +  P  Q +       W P +   LKLN DAACR   + FG IIRDSS S++AA S  VP   SP
Subjt:  DRNSVLNGKQLMPVDQKCTWISSYATTYKQLQVDQSLRPAMQRSSYRQPMGWNPPTDNFLKLNVDAACRPNYSGFGLIIRDSSGSIMAAKSQVVPVSFSP

Query:  -LAEIKVIIE
         LAEI+ I+E
Subjt:  -LAEIKVIIE

A0A803NM27 Uncharacterized protein4.2e-0640Show/hide
Query:  ADRNSVLNGK---QLMPVDQKCTWISSYATTYKQLQVDQSLRPAMQRSSYRQPMGWNPPTDNFLKLNVDAACRPNYS--GFGLIIRDSSGSIMAAKSQVV
        +DRN+VL+GK   Q   +  K     S   + +QL +   L PA   +++R    W PP  N LKLNVDAA        GFG IIRDS+G++ AA S  +
Subjt:  ADRNSVLNGK---QLMPVDQKCTWISSYATTYKQLQVDQSLRPAMQRSSYRQPMGWNPPTDNFLKLNVDAACRPNYS--GFGLIIRDSSGSIMAAKSQVV

A0A803QAH8 Uncharacterized protein3.6e-0538.61Show/hide
Query:  ADRNSVLNGK---QLMPVDQK-CTWISSYATTYKQLQVDQSLRPAMQRSSYRQPMGWNPPTDNFLKLNVDAACRPNYS--GFGLIIRDSSGSIMAAKSQV
        +DRN+V++GK   Q   +  K  +++SS+ + + QL +   L PA   ++++    W PP   FLKLNVDAA        GFG IIRDS+G + AA S  
Subjt:  ADRNSVLNGK---QLMPVDQK-CTWISSYATTYKQLQVDQSLRPAMQRSSYRQPMGWNPPTDNFLKLNVDAACRPNYS--GFGLIIRDSSGSIMAAKSQV

Query:  V
        +
Subjt:  V

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GCGGATCGTAACTCTGTGCTTAATGGAAAGCAACTTATGCCAGTCGACCAAAAATGTACCTGGATTTCTTCATATGCCACAACCTACAAGCAATTGCAAGTAGATCAGAG
CCTTCGTCCGGCCATGCAACGCTCTTCCTATCGCCAGCCCATGGGTTGGAATCCCCCTACAGATAACTTCTTGAAGCTCAATGTCGATGCAGCTTGTAGACCCAATTACT
CAGGCTTCGGTCTTATTATTCGAGATTCCAGCGGTTCGATCATGGCCGCAAAATCCCAAGTGGTTCCCGTCAGCTTTTCTCCGCTTGCTGAAATCAAAGTCATCATCGAG
ACCTGGCAATCTCTCTTTAAT
mRNA sequenceShow/hide mRNA sequence
GCGGATCGTAACTCTGTGCTTAATGGAAAGCAACTTATGCCAGTCGACCAAAAATGTACCTGGATTTCTTCATATGCCACAACCTACAAGCAATTGCAAGTAGATCAGAG
CCTTCGTCCGGCCATGCAACGCTCTTCCTATCGCCAGCCCATGGGTTGGAATCCCCCTACAGATAACTTCTTGAAGCTCAATGTCGATGCAGCTTGTAGACCCAATTACT
CAGGCTTCGGTCTTATTATTCGAGATTCCAGCGGTTCGATCATGGCCGCAAAATCCCAAGTGGTTCCCGTCAGCTTTTCTCCGCTTGCTGAAATCAAAGTCATCATCGAG
ACCTGGCAATCTCTCTTTAAT
Protein sequenceShow/hide protein sequence
ADRNSVLNGKQLMPVDQKCTWISSYATTYKQLQVDQSLRPAMQRSSYRQPMGWNPPTDNFLKLNVDAACRPNYSGFGLIIRDSSGSIMAAKSQVVPVSFSPLAEIKVIIE
TWQSLFN