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MS001056 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS001056
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionDNA-directed RNA polymerase subunit beta
Genome locationscaffold36:1165052..1165228
RNA-Seq ExpressionMS001056
SyntenyMS001056
Gene Ontology termsGO:0006357 - regulation of transcription by RNA polymerase II (biological process)
GO:0009561 - megagametogenesis (biological process)
GO:0051726 - regulation of cell cycle (biological process)
GO:0005736 - RNA polymerase I complex (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0003899 - DNA-directed 5'-3' RNA polymerase activity (molecular function)
GO:0032549 - ribonucleoside binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8647278.1 hypothetical protein Csa_003919, partial [Cucumis sativus]4.4e-2288.14Show/hide
Query:  MVVKFGENPDYEALRELFRHHIESFDHLVDAGLETVLNSVKPVEVYDSFTNKKLRNILL
        MVVKF EN DYEALRELFRHHIESFDHLVDAGLET++NS+KPVE+YDSFTNKKLRNIL+
Subjt:  MVVKFGENPDYEALRELFRHHIESFDHLVDAGLETVLNSVKPVEVYDSFTNKKLRNILL
KAG7020194.1 DNA-directed RNA polymerase I subunit 2 [Cucurbita argyrosperma subsp. argyrosperma]7.0e-2087.27Show/hide
Query:  MVVKFGENPDYEALRELFRHHIESFDHLVDAGLETVLNSVKPVEVYDSFTNKKLR
        MVVKF EN DYEALRELFRHHIESFDHLVDAGLET++NS+KPVE+YDSFTN+KLR
Subjt:  MVVKFGENPDYEALRELFRHHIESFDHLVDAGLETVLNSVKPVEVYDSFTNKKLR
XP_004146776.1 DNA-directed RNA polymerase I subunit 2 [Cucumis sativus]3.2e-2089.09Show/hide
Query:  MVVKFGENPDYEALRELFRHHIESFDHLVDAGLETVLNSVKPVEVYDSFTNKKLR
        MVVKF EN DYEALRELFRHHIESFDHLVDAGLET++NS+KPVE+YDSFTNKKLR
Subjt:  MVVKFGENPDYEALRELFRHHIESFDHLVDAGLETVLNSVKPVEVYDSFTNKKLR
XP_008445376.1 PREDICTED: DNA-directed RNA polymerase I subunit 2 [Cucumis melo]5.4e-2089.09Show/hide
Query:  MVVKFGENPDYEALRELFRHHIESFDHLVDAGLETVLNSVKPVEVYDSFTNKKLR
        MVVKF EN DYEALRELFRHHIESFDHLVDAGLET++NS+KPVE+YDSFTNKKLR
Subjt:  MVVKFGENPDYEALRELFRHHIESFDHLVDAGLETVLNSVKPVEVYDSFTNKKLR
XP_022131547.1 DNA-directed RNA polymerase I subunit 2 [Momordica charantia]1.2e-22100Show/hide
Query:  MVVKFGENPDYEALRELFRHHIESFDHLVDAGLETVLNSVKPVEVYDSFTNKKLR
        MVVKFGENPDYEALRELFRHHIESFDHLVDAGLETVLNSVKPVEVYDSFTNKKLR
Subjt:  MVVKFGENPDYEALRELFRHHIESFDHLVDAGLETVLNSVKPVEVYDSFTNKKLR
TrEMBL top hitse value%identityAlignment
A0A0A0KFX3 Uncharacterized protein2.1e-2288.14Show/hide
Query:  MVVKFGENPDYEALRELFRHHIESFDHLVDAGLETVLNSVKPVEVYDSFTNKKLRNILL
        MVVKF EN DYEALRELFRHHIESFDHLVDAGLET++NS+KPVE+YDSFTNKKLRNIL+
Subjt:  MVVKFGENPDYEALRELFRHHIESFDHLVDAGLETVLNSVKPVEVYDSFTNKKLRNILL
A0A1S3BCJ8 DNA-directed RNA polymerase subunit beta2.6e-2089.09Show/hide
Query:  MVVKFGENPDYEALRELFRHHIESFDHLVDAGLETVLNSVKPVEVYDSFTNKKLR
        MVVKF EN DYEALRELFRHHIESFDHLVDAGLET++NS+KPVE+YDSFTNKKLR
Subjt:  MVVKFGENPDYEALRELFRHHIESFDHLVDAGLETVLNSVKPVEVYDSFTNKKLR
A0A6J1BRB2 DNA-directed RNA polymerase subunit beta5.6e-23100Show/hide
Query:  MVVKFGENPDYEALRELFRHHIESFDHLVDAGLETVLNSVKPVEVYDSFTNKKLR
        MVVKFGENPDYEALRELFRHHIESFDHLVDAGLETVLNSVKPVEVYDSFTNKKLR
Subjt:  MVVKFGENPDYEALRELFRHHIESFDHLVDAGLETVLNSVKPVEVYDSFTNKKLR
A0A6J1GI72 DNA-directed RNA polymerase subunit beta7.6e-2087.27Show/hide
Query:  MVVKFGENPDYEALRELFRHHIESFDHLVDAGLETVLNSVKPVEVYDSFTNKKLR
        MVVKF EN DYEALRELFRHHIESFDHLVDAGLET++NS+KPVE+YDSFTN+KLR
Subjt:  MVVKFGENPDYEALRELFRHHIESFDHLVDAGLETVLNSVKPVEVYDSFTNKKLR
A0A6J1KKK5 DNA-directed RNA polymerase subunit beta2.9e-1983.64Show/hide
Query:  MVVKFGENPDYEALRELFRHHIESFDHLVDAGLETVLNSVKPVEVYDSFTNKKLR
        MVVKF EN DYEALRELFRHHIES+DHLVDAGLET++NS+KPVE+YDSFT++KLR
Subjt:  MVVKFGENPDYEALRELFRHHIESFDHLVDAGLETVLNSVKPVEVYDSFTNKKLR
SwissProt top hitse value%identityAlignment
F4I366 DNA-directed RNA polymerase I subunit 21.7e-0546.67Show/hide
Query:  DYEALRELFRHHIESFDHLVDAGLETVLNSVKPVEVYDSFTNKKL
        D++ L  L  HHIESFD++   GL+ + N +KPV VYD  T  +L
Subjt:  DYEALRELFRHHIESFDHLVDAGLETVLNSVKPVEVYDSFTNKKL
Arabidopsis top hitse value%identityAlignment
AT1G29940.1 nuclear RNA polymerase A21.2e-0646.67Show/hide
Query:  DYEALRELFRHHIESFDHLVDAGLETVLNSVKPVEVYDSFTNKKL
        D++ L  L  HHIESFD++   GL+ + N +KPV VYD  T  +L
Subjt:  DYEALRELFRHHIESFDHLVDAGLETVLNSVKPVEVYDSFTNKKL

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTGGTGAAATTTGGCGAGAATCCAGACTATGAGGCGCTGCGCGAGCTGTTCAGACACCATATTGAATCGTTTGATCACCTCGTGGATGCGGGACTGGAGACAGTCTT
AAACAGCGTCAAACCTGTCGAAGTCTACGATTCATTCACCAACAAAAAGCTTAGAAATATCCTGTTA
mRNA sequenceShow/hide mRNA sequence
ATGGTGGTGAAATTTGGCGAGAATCCAGACTATGAGGCGCTGCGCGAGCTGTTCAGACACCATATTGAATCGTTTGATCACCTCGTGGATGCGGGACTGGAGACAGTCTT
AAACAGCGTCAAACCTGTCGAAGTCTACGATTCATTCACCAACAAAAAGCTTAGAAATATCCTGTTA
Protein sequenceShow/hide protein sequence
MVVKFGENPDYEALRELFRHHIESFDHLVDAGLETVLNSVKPVEVYDSFTNKKLRNILL