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MS001105 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS001105
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptioncytochrome c oxidase subunit 6b-1-like
Genome locationscaffold36:1487404..1488344
RNA-Seq ExpressionMS001105
SyntenyMS001105
Gene Ontology termsGO:0005739 - mitochondrion (cellular component)
GO:0045277 - respiratory chain complex IV (cellular component)
InterPro domainsIPR003213 - Cytochrome c oxidase, subunit VIb
IPR036549 - Cytochrome c oxidase, subunit VIb superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004152624.1 cytochrome c oxidase subunit 6b-1 [Cucumis sativus]7.2e-6577.6Show/hide
Query:  QRYALKEKEENV------KVQEVESSENPAPAEVV--KNEPPVEADVDQGGDSAPADENNEDASAAAAVDDSETNPAAENDSGTADQESSGAGEEEN---
        ++Y+LKEKEE V      +V+EVE+SEN APAEVV   +EPPVEA  DQ  D  PA+E+N D S+AAAV+DSET+PAAENDSG A++ESSGAGEEEN   
Subjt:  QRYALKEKEENV------KVQEVESSENPAPAEVV--KNEPPVEADVDQGGDSAPADENNEDASAAAAVDDSETNPAAENDSGTADQESSGAGEEEN---

Query:  QESTDEPPEIKLETAPADFRFPTTNQTRHCFTRYIEFHRCTAAKGEGAPECDKFAKYYRSLCPSEWVEKWNEQRENGTFPGPL
        QESTDE PEIKLETAP DFRFPTTNQTRHCFTRYIEFHRCT AKGEGAPEC+KFAKYYRSLCPSEWVEKWNEQRENGTFPGPL
Subjt:  QESTDEPPEIKLETAPADFRFPTTNQTRHCFTRYIEFHRCTAAKGEGAPECDKFAKYYRSLCPSEWVEKWNEQRENGTFPGPL

XP_008444857.1 PREDICTED: cytochrome c oxidase subunit 6b-1-like [Cucumis melo]2.8e-6173.91Show/hide
Query:  QRYALKEKEENV------KVQEVESSENPAPAEVV--KNEPPVEADVDQGGDSAPADENNEDASAAAAVDDSETNPAAENDSG-TADQESSGAGEEEN--
        ++Y+LKEKEE V      +V+EVE++EN APAEVV   +EPPVEAD DQ  D+ PA+E       + AV+DSET PAAENDSG  A++ESSGAGEEEN  
Subjt:  QRYALKEKEENV------KVQEVESSENPAPAEVV--KNEPPVEADVDQGGDSAPADENNEDASAAAAVDDSETNPAAENDSG-TADQESSGAGEEEN--

Query:  -QESTDEPPEIKLETAPADFRFPTTNQTRHCFTRYIEFHRCTAAKGEGAPECDKFAKYYRSLCPSEWVEKWNEQRENGTFPGPL
         QESTDE PEIKLETAP DFRFPTTNQTRHCFTRYIE+HRCT AKGEGAPEC+KFAKYYRSLCPSEWVEKWNEQRENGTFPGPL
Subjt:  -QESTDEPPEIKLETAPADFRFPTTNQTRHCFTRYIEFHRCTAAKGEGAPECDKFAKYYRSLCPSEWVEKWNEQRENGTFPGPL

XP_022131889.1 cytochrome c oxidase subunit 6b-1-like [Momordica charantia]1.5e-8698.26Show/hide
Query:  QRYALKEKEENVKVQEVESSENPAPAEVVKNEPPVEADVDQGGDSAPADENNEDASAAAAVDDSETNPAAENDSGTADQESSGAGEEENQESTDEPPEIK
        +RYALKEKEENVKVQEVESSENPAPA+VVKNEPPVEADVDQGGDSAPADENNEDASAAAAVDDSETNPAAENDSGTADQESSGAGEEENQESTDEP EIK
Subjt:  QRYALKEKEENVKVQEVESSENPAPAEVVKNEPPVEADVDQGGDSAPADENNEDASAAAAVDDSETNPAAENDSGTADQESSGAGEEENQESTDEPPEIK

Query:  LETAPADFRFPTTNQTRHCFTRYIEFHRCTAAKGEGAPECDKFAKYYRSLCPSEWVEKWNEQRENGTFPGPL
        LETAPADFRFPTTNQTRHCFTRYIEFHRCTAAKGEGAPECDKFAKYYRSLCPSEWVEKWNEQRENGTFPGPL
Subjt:  LETAPADFRFPTTNQTRHCFTRYIEFHRCTAAKGEGAPECDKFAKYYRSLCPSEWVEKWNEQRENGTFPGPL

XP_023547029.1 cytochrome c oxidase subunit 6b-1-like isoform X1 [Cucurbita pepo subsp. pepo]2.4e-6073.89Show/hide
Query:  QRYALKEKEENV------KVQEVESSENPAPAEVV--KNEPPVEADVDQGGDSAPADENNEDASAAAAVDDSETNPAAENDSGTADQESSGAGEEENQES
        ++Y+LKEKEE V      +V+EV++SEN APAEVV   +EPPVEAD DQG D+ PADENN DASAAAAV+DSETN AA       ++E SG     +QES
Subjt:  QRYALKEKEENV------KVQEVESSENPAPAEVV--KNEPPVEADVDQGGDSAPADENNEDASAAAAVDDSETNPAAENDSGTADQESSGAGEEENQES

Query:  TDEPPEIKLETAPADFRFPTTNQTRHCFTRYIEFHRCTAAKGEGAPECDKFAKYYRSLCPSEWVEKWNEQRENGTFPGPL
        TDE PEIKLETAPADFRFPTTNQTRHCFTRYIE+HRCT AKGEGAPECDKFAKYYRSLCP+EWVEKWNEQRENG FPGPL
Subjt:  TDEPPEIKLETAPADFRFPTTNQTRHCFTRYIEFHRCTAAKGEGAPECDKFAKYYRSLCPSEWVEKWNEQRENGTFPGPL

XP_038886001.1 cytochrome c oxidase subunit 6b-1-like [Benincasa hispida]1.3e-6678.14Show/hide
Query:  QRYALKEKEENV------KVQEVESSENPAPAEVV--KNEPPVEADVDQGGDSAPADENNEDASAAAAVDDSETNPAAENDSGTADQESSGAGEEEN---
        ++Y+LKEKEE V      +V+EVE+SEN A AEVV   +EPPVEA+ +QG D +PA+ENN DA AAAAV+DSET+PAAENDSG AD+ESSGAG EEN   
Subjt:  QRYALKEKEENV------KVQEVESSENPAPAEVV--KNEPPVEADVDQGGDSAPADENNEDASAAAAVDDSETNPAAENDSGTADQESSGAGEEEN---

Query:  QESTDEPPEIKLETAPADFRFPTTNQTRHCFTRYIEFHRCTAAKGEGAPECDKFAKYYRSLCPSEWVEKWNEQRENGTFPGPL
        QESTDE PEIKLETAPADFRFPTTNQTRHCFTRYIE+HRC  AKGEGAPECDKFAKYYRSLCPSEWVEKWNEQRENGTFPGPL
Subjt:  QESTDEPPEIKLETAPADFRFPTTNQTRHCFTRYIEFHRCTAAKGEGAPECDKFAKYYRSLCPSEWVEKWNEQRENGTFPGPL

TrEMBL top hitse value%identityAlignment
A0A0A0LNV6 Uncharacterized protein3.5e-6577.6Show/hide
Query:  QRYALKEKEENV------KVQEVESSENPAPAEVV--KNEPPVEADVDQGGDSAPADENNEDASAAAAVDDSETNPAAENDSGTADQESSGAGEEEN---
        ++Y+LKEKEE V      +V+EVE+SEN APAEVV   +EPPVEA  DQ  D  PA+E+N D S+AAAV+DSET+PAAENDSG A++ESSGAGEEEN   
Subjt:  QRYALKEKEENV------KVQEVESSENPAPAEVV--KNEPPVEADVDQGGDSAPADENNEDASAAAAVDDSETNPAAENDSGTADQESSGAGEEEN---

Query:  QESTDEPPEIKLETAPADFRFPTTNQTRHCFTRYIEFHRCTAAKGEGAPECDKFAKYYRSLCPSEWVEKWNEQRENGTFPGPL
        QESTDE PEIKLETAP DFRFPTTNQTRHCFTRYIEFHRCT AKGEGAPEC+KFAKYYRSLCPSEWVEKWNEQRENGTFPGPL
Subjt:  QESTDEPPEIKLETAPADFRFPTTNQTRHCFTRYIEFHRCTAAKGEGAPECDKFAKYYRSLCPSEWVEKWNEQRENGTFPGPL

A0A1S3BC78 cytochrome c oxidase subunit 6b-1-like1.4e-6173.91Show/hide
Query:  QRYALKEKEENV------KVQEVESSENPAPAEVV--KNEPPVEADVDQGGDSAPADENNEDASAAAAVDDSETNPAAENDSG-TADQESSGAGEEEN--
        ++Y+LKEKEE V      +V+EVE++EN APAEVV   +EPPVEAD DQ  D+ PA+E       + AV+DSET PAAENDSG  A++ESSGAGEEEN  
Subjt:  QRYALKEKEENV------KVQEVESSENPAPAEVV--KNEPPVEADVDQGGDSAPADENNEDASAAAAVDDSETNPAAENDSG-TADQESSGAGEEEN--

Query:  -QESTDEPPEIKLETAPADFRFPTTNQTRHCFTRYIEFHRCTAAKGEGAPECDKFAKYYRSLCPSEWVEKWNEQRENGTFPGPL
         QESTDE PEIKLETAP DFRFPTTNQTRHCFTRYIE+HRCT AKGEGAPEC+KFAKYYRSLCPSEWVEKWNEQRENGTFPGPL
Subjt:  -QESTDEPPEIKLETAPADFRFPTTNQTRHCFTRYIEFHRCTAAKGEGAPECDKFAKYYRSLCPSEWVEKWNEQRENGTFPGPL

A0A5A7VCW9 Cytochrome c oxidase subunit 6b-1-like1.4e-6173.91Show/hide
Query:  QRYALKEKEENV------KVQEVESSENPAPAEVV--KNEPPVEADVDQGGDSAPADENNEDASAAAAVDDSETNPAAENDSG-TADQESSGAGEEEN--
        ++Y+LKEKEE V      +V+EVE++EN APAEVV   +EPPVEAD DQ  D+ PA+E       + AV+DSET PAAENDSG  A++ESSGAGEEEN  
Subjt:  QRYALKEKEENV------KVQEVESSENPAPAEVV--KNEPPVEADVDQGGDSAPADENNEDASAAAAVDDSETNPAAENDSG-TADQESSGAGEEEN--

Query:  -QESTDEPPEIKLETAPADFRFPTTNQTRHCFTRYIEFHRCTAAKGEGAPECDKFAKYYRSLCPSEWVEKWNEQRENGTFPGPL
         QESTDE PEIKLETAP DFRFPTTNQTRHCFTRYIE+HRCT AKGEGAPEC+KFAKYYRSLCPSEWVEKWNEQRENGTFPGPL
Subjt:  -QESTDEPPEIKLETAPADFRFPTTNQTRHCFTRYIEFHRCTAAKGEGAPECDKFAKYYRSLCPSEWVEKWNEQRENGTFPGPL

A0A6J1BRI2 cytochrome c oxidase subunit 6b-1-like7.2e-8798.26Show/hide
Query:  QRYALKEKEENVKVQEVESSENPAPAEVVKNEPPVEADVDQGGDSAPADENNEDASAAAAVDDSETNPAAENDSGTADQESSGAGEEENQESTDEPPEIK
        +RYALKEKEENVKVQEVESSENPAPA+VVKNEPPVEADVDQGGDSAPADENNEDASAAAAVDDSETNPAAENDSGTADQESSGAGEEENQESTDEP EIK
Subjt:  QRYALKEKEENVKVQEVESSENPAPAEVVKNEPPVEADVDQGGDSAPADENNEDASAAAAVDDSETNPAAENDSGTADQESSGAGEEENQESTDEPPEIK

Query:  LETAPADFRFPTTNQTRHCFTRYIEFHRCTAAKGEGAPECDKFAKYYRSLCPSEWVEKWNEQRENGTFPGPL
        LETAPADFRFPTTNQTRHCFTRYIEFHRCTAAKGEGAPECDKFAKYYRSLCPSEWVEKWNEQRENGTFPGPL
Subjt:  LETAPADFRFPTTNQTRHCFTRYIEFHRCTAAKGEGAPECDKFAKYYRSLCPSEWVEKWNEQRENGTFPGPL

A0A6J1KAZ5 cytochrome c oxidase subunit 6b-1-like isoform X13.4e-6073.33Show/hide
Query:  QRYALKEKEENV------KVQEVESSENPAPAEVV--KNEPPVEADVDQGGDSAPADENNEDASAAAAVDDSETNPAAENDSGTADQESSGAGEEENQES
        ++Y+LKEKEE V      +V+EVE+SEN APAE+V   +EPPVEAD D+G ++ PADENN DASAAAAV+DSETN AA       ++E SG     +QES
Subjt:  QRYALKEKEENV------KVQEVESSENPAPAEVV--KNEPPVEADVDQGGDSAPADENNEDASAAAAVDDSETNPAAENDSGTADQESSGAGEEENQES

Query:  TDEPPEIKLETAPADFRFPTTNQTRHCFTRYIEFHRCTAAKGEGAPECDKFAKYYRSLCPSEWVEKWNEQRENGTFPGPL
        TDE PEIKLETAPADFRFPTTNQTRHCFTRYIE+HRCT AKGEGAPECDKFAKYYRSLCPSEWVEKWNEQRENG FPGPL
Subjt:  TDEPPEIKLETAPADFRFPTTNQTRHCFTRYIEFHRCTAAKGEGAPECDKFAKYYRSLCPSEWVEKWNEQRENGTFPGPL

SwissProt top hitse value%identityAlignment
O94581 Cytochrome c oxidase subunit 12, mitochondrial1.3e-2154.22Show/hide
Query:  QESTDEPPEIKLETAPADFRFPTTNQTRHCFTRYIEFHRCTAAKGEGAPECDKFAKYYRSLCPSEWVEKWNEQRENGTFPGPL
        QE  + P +    T   D RFP TNQT+HCF  YI++ RC  AKGE    C +F   Y+SLCP EWVE+W+EQRENGTFP P+
Subjt:  QESTDEPPEIKLETAPADFRFPTTNQTRHCFTRYIEFHRCTAAKGEGAPECDKFAKYYRSLCPSEWVEKWNEQRENGTFPGPL

Q4R374 Cytochrome c oxidase subunit 6B11.3e-1650Show/hide
Query:  ETAPADFRFPTTNQTRHCFTRYIEFHRCTAA---KGEGAPECDKFAKYYRSLCPSEWVEKWNEQRENGTFPGPL
        +TAP D RFP  NQTR+C+  Y++FHRC  A   KG     C+ + + Y+SLCP+ WV  W+EQR  GTFPG +
Subjt:  ETAPADFRFPTTNQTRHCFTRYIEFHRCTAA---KGEGAPECDKFAKYYRSLCPSEWVEKWNEQRENGTFPGPL

Q945L0 Cytochrome c oxidase subunit 6b-26.2e-3582.67Show/hide
Query:  EIKLETAPADFRFPTTNQTRHCFTRYIEFHRCTAAKGEGAPECDKFAKYYRSLCPSEWVEKWNEQRENGTFPGPL
        EI+L+TAPADFRFPTTNQTRHCFTRYIEFHRCT AKGE + +C++FAKYYR+LCP EWV+KWNEQRE+GTFPGPL
Subjt:  EIKLETAPADFRFPTTNQTRHCFTRYIEFHRCTAAKGEGAPECDKFAKYYRSLCPSEWVEKWNEQRENGTFPGPL

Q9S7L9 Cytochrome c oxidase subunit 6b-11.4e-3954.86Show/hide
Query:  QRYALKEKEENVKVQEVESSENPAPAEVVKNEPPVE---ADVDQGGDSAPADENNEDASAAAAVDDSETNPAAENDSGTADQESSGAGEEENQESTDEPP
        Q  + K  E      EV +       E  K E PVE   + V++  +SAP        + AAA D++E  PAA      A++ +     EE  E T  P 
Subjt:  QRYALKEKEENVKVQEVESSENPAPAEVVKNEPPVE---ADVDQGGDSAPADENNEDASAAAAVDDSETNPAAENDSGTADQESSGAGEEENQESTDEPP

Query:  EIKLETAPADFRFPTTNQTRHCFTRYIEFHRCTAAKGEGAPECDKFAKYYRSLCPSEWVEKWNEQRENGTFPGPL
        EIKLETAPADFRFPTTNQTRHCFTRY+E+HRC AAKG+ APECDKFAK+YRSLCPSEWV++WNEQRENGTFPGPL
Subjt:  EIKLETAPADFRFPTTNQTRHCFTRYIEFHRCTAAKGEGAPECDKFAKYYRSLCPSEWVEKWNEQRENGTFPGPL

Q9SUD3 Cytochrome c oxidase subunit 6b-31.2e-3585.33Show/hide
Query:  EIKLETAPADFRFPTTNQTRHCFTRYIEFHRCTAAKGEGAPECDKFAKYYRSLCPSEWVEKWNEQRENGTFPGPL
        EI+L+TAPADFRFPTTNQTRHCFTRYIEFHRCT AKGE A EC++FAKYYR+LCP EWV+KWNEQRE GTFPGPL
Subjt:  EIKLETAPADFRFPTTNQTRHCFTRYIEFHRCTAAKGEGAPECDKFAKYYRSLCPSEWVEKWNEQRENGTFPGPL

Arabidopsis top hitse value%identityAlignment
AT1G22450.1 cytochrome C oxidase 6B1.0e-4054.86Show/hide
Query:  QRYALKEKEENVKVQEVESSENPAPAEVVKNEPPVE---ADVDQGGDSAPADENNEDASAAAAVDDSETNPAAENDSGTADQESSGAGEEENQESTDEPP
        Q  + K  E      EV +       E  K E PVE   + V++  +SAP        + AAA D++E  PAA      A++ +     EE  E T  P 
Subjt:  QRYALKEKEENVKVQEVESSENPAPAEVVKNEPPVE---ADVDQGGDSAPADENNEDASAAAAVDDSETNPAAENDSGTADQESSGAGEEENQESTDEPP

Query:  EIKLETAPADFRFPTTNQTRHCFTRYIEFHRCTAAKGEGAPECDKFAKYYRSLCPSEWVEKWNEQRENGTFPGPL
        EIKLETAPADFRFPTTNQTRHCFTRY+E+HRC AAKG+ APECDKFAK+YRSLCPSEWV++WNEQRENGTFPGPL
Subjt:  EIKLETAPADFRFPTTNQTRHCFTRYIEFHRCTAAKGEGAPECDKFAKYYRSLCPSEWVEKWNEQRENGTFPGPL

AT1G32710.1 Cytochrome c oxidase, subunit Vib family protein3.7e-1142.86Show/hide
Query:  APADFRFPTTNQTRHCFTRYIEFHRCTAAKGEGAPECDKFAKYYRSLCPSEWVEK-WNEQREN
        A  + RFP TN+TRHCF R++++H+C    G  A +C+    Y RS+CP E V K W +   N
Subjt:  APADFRFPTTNQTRHCFTRYIEFHRCTAAKGEGAPECDKFAKYYRSLCPSEWVEK-WNEQREN

AT4G28060.1 Cytochrome c oxidase, subunit Vib family protein8.8e-3785.33Show/hide
Query:  EIKLETAPADFRFPTTNQTRHCFTRYIEFHRCTAAKGEGAPECDKFAKYYRSLCPSEWVEKWNEQRENGTFPGPL
        EI+L+TAPADFRFPTTNQTRHCFTRYIEFHRCT AKGE A EC++FAKYYR+LCP EWV+KWNEQRE GTFPGPL
Subjt:  EIKLETAPADFRFPTTNQTRHCFTRYIEFHRCTAAKGEGAPECDKFAKYYRSLCPSEWVEKWNEQRENGTFPGPL

AT5G57815.1 Cytochrome c oxidase, subunit Vib family protein4.4e-3682.67Show/hide
Query:  EIKLETAPADFRFPTTNQTRHCFTRYIEFHRCTAAKGEGAPECDKFAKYYRSLCPSEWVEKWNEQRENGTFPGPL
        EI+L+TAPADFRFPTTNQTRHCFTRYIEFHRCT AKGE + +C++FAKYYR+LCP EWV+KWNEQRE+GTFPGPL
Subjt:  EIKLETAPADFRFPTTNQTRHCFTRYIEFHRCTAAKGEGAPECDKFAKYYRSLCPSEWVEKWNEQRENGTFPGPL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
CAGCGATATGCTTTGAAAGAAAAGGAGGAGAATGTGAAGGTACAAGAGGTGGAGAGCTCAGAAAATCCTGCTCCCGCTGAAGTTGTGAAGAATGAACCACCTGTGGAAGC
TGATGTTGATCAAGGCGGTGACAGTGCTCCTGCCGATGAAAACAATGAAGATGCTTCGGCAGCTGCTGCTGTAGATGACTCTGAAACCAATCCTGCTGCTGAAAACGACA
GTGGAACTGCTGATCAAGAAAGCAGCGGAGCTGGAGAAGAGGAAAATCAAGAGAGCACAGATGAGCCGCCGGAGATTAAGCTCGAAACAGCACCAGCAGATTTCCGGTTT
CCCACTACAAATCAAACTAGGCATTGCTTCACACGCTATATCGAGTTCCATCGATGCACAGCAGCGAAAGGGGAAGGTGCTCCAGAGTGCGACAAGTTTGCGAAATATTA
CCGTTCTCTTTGCCCGAGTGAATGGGTGGAGAAGTGGAATGAGCAAAGGGAGAACGGAACCTTCCCAGGTCCACTG
mRNA sequenceShow/hide mRNA sequence
CAGCGATATGCTTTGAAAGAAAAGGAGGAGAATGTGAAGGTACAAGAGGTGGAGAGCTCAGAAAATCCTGCTCCCGCTGAAGTTGTGAAGAATGAACCACCTGTGGAAGC
TGATGTTGATCAAGGCGGTGACAGTGCTCCTGCCGATGAAAACAATGAAGATGCTTCGGCAGCTGCTGCTGTAGATGACTCTGAAACCAATCCTGCTGCTGAAAACGACA
GTGGAACTGCTGATCAAGAAAGCAGCGGAGCTGGAGAAGAGGAAAATCAAGAGAGCACAGATGAGCCGCCGGAGATTAAGCTCGAAACAGCACCAGCAGATTTCCGGTTT
CCCACTACAAATCAAACTAGGCATTGCTTCACACGCTATATCGAGTTCCATCGATGCACAGCAGCGAAAGGGGAAGGTGCTCCAGAGTGCGACAAGTTTGCGAAATATTA
CCGTTCTCTTTGCCCGAGTGAATGGGTGGAGAAGTGGAATGAGCAAAGGGAGAACGGAACCTTCCCAGGTCCACTG
Protein sequenceShow/hide protein sequence
QRYALKEKEENVKVQEVESSENPAPAEVVKNEPPVEADVDQGGDSAPADENNEDASAAAAVDDSETNPAAENDSGTADQESSGAGEEENQESTDEPPEIKLETAPADFRF
PTTNQTRHCFTRYIEFHRCTAAKGEGAPECDKFAKYYRSLCPSEWVEKWNEQRENGTFPGPL