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MS001136 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS001136
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionAcetyl-coenzyme A carboxylase carboxyl transferase subunit beta, chloroplastic
Genome locationscaffold36:1721339..1721462
RNA-Seq ExpressionMS001136
SyntenyMS001136
Gene Ontology termsGO:0006633 - fatty acid biosynthetic process (biological process)
GO:2001295 - malonyl-CoA biosynthetic process (biological process)
GO:0009317 - acetyl-CoA carboxylase complex (cellular component)
GO:0009570 - chloroplast stroma (cellular component)
GO:0000287 - magnesium ion binding (molecular function)
GO:0003989 - acetyl-CoA carboxylase activity (molecular function)
GO:0005524 - ATP binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
GO:0016743 - carboxyl- or carbamoyltransferase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_023000627.1 uncharacterized protein LOC111494870 [Cucurbita maxima]1.5e-0888.37Show/hide
Query:  IINNMNKNIHNHSD--STSTVDDLVGIRNFVSDDTFLVRDSNS
        IINNMNKNI +HSD  S STVDDLVGIRNFVSDDTFLVRDSNS
Subjt:  IINNMNKNIHNHSD--STSTVDDLVGIRNFVSDDTFLVRDSNS

XP_023521964.1 uncharacterized protein LOC111785813 [Cucurbita pepo subsp. pepo]1.5e-0888.37Show/hide
Query:  IINNMNKNIHNHSD--STSTVDDLVGIRNFVSDDTFLVRDSNS
        IINNMNKNI +HSD  S STVDDLVGIRNFVSDDTFLVRDSNS
Subjt:  IINNMNKNIHNHSD--STSTVDDLVGIRNFVSDDTFLVRDSNS

YP_009447459.1 acetyl-CoA carboxylase beta subunit [Cucurbita maxima]1.5e-0888.37Show/hide
Query:  IINNMNKNIHNHSD--STSTVDDLVGIRNFVSDDTFLVRDSNS
        IINNMNKNI +HSD  S STVDDLVGIRNFVSDDTFLVRDSNS
Subjt:  IINNMNKNIHNHSD--STSTVDDLVGIRNFVSDDTFLVRDSNS

YP_009447544.1 acetyl-CoA carboxylase beta subunit [Cucurbita moschata]1.5e-0888.37Show/hide
Query:  IINNMNKNIHNHSD--STSTVDDLVGIRNFVSDDTFLVRDSNS
        IINNMNKNI +HSD  S STVDDLVGIRNFVSDDTFLVRDSNS
Subjt:  IINNMNKNIHNHSD--STSTVDDLVGIRNFVSDDTFLVRDSNS

YP_009752929.1 acetyl-CoA carboxylase subunit beta [Momordica sessilifolia]1.5e-0884.44Show/hide
Query:  IINNMNKNIHNHSDST----STVDDLVGIRNFVSDDTFLVRDSNS
        IINN+NKNI NHSDS     STVDDLVGIRNFVSDDTFLVRDSNS
Subjt:  IINNMNKNIHNHSDST----STVDDLVGIRNFVSDDTFLVRDSNS

TrEMBL top hitse value%identityAlignment
A0A2H4T210 Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, chloroplastic7.1e-0988.37Show/hide
Query:  IINNMNKNIHNHSD--STSTVDDLVGIRNFVSDDTFLVRDSNS
        IINNMNKNI +HSD  S STVDDLVGIRNFVSDDTFLVRDSNS
Subjt:  IINNMNKNIHNHSD--STSTVDDLVGIRNFVSDDTFLVRDSNS

A0A2H4T291 Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, chloroplastic7.1e-0988.37Show/hide
Query:  IINNMNKNIHNHSD--STSTVDDLVGIRNFVSDDTFLVRDSNS
        IINNMNKNI +HSD  S STVDDLVGIRNFVSDDTFLVRDSNS
Subjt:  IINNMNKNIHNHSD--STSTVDDLVGIRNFVSDDTFLVRDSNS

A0A344AXQ6 Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, chloroplastic7.1e-0988.37Show/hide
Query:  IINNMNKNIHNHSD--STSTVDDLVGIRNFVSDDTFLVRDSNS
        IINNMNKNI +HSD  S STVDDLVGIRNFVSDDTFLVRDSNS
Subjt:  IINNMNKNIHNHSD--STSTVDDLVGIRNFVSDDTFLVRDSNS

A0A6H0EUK2 Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, chloroplastic7.1e-0984.44Show/hide
Query:  IINNMNKNIHNHSDST----STVDDLVGIRNFVSDDTFLVRDSNS
        IINN+NKNI NHSDS     STVDDLVGIRNFVSDDTFLVRDSNS
Subjt:  IINNMNKNIHNHSDST----STVDDLVGIRNFVSDDTFLVRDSNS

A0A6J1KE58 uncharacterized protein LOC1114948707.1e-0988.37Show/hide
Query:  IINNMNKNIHNHSD--STSTVDDLVGIRNFVSDDTFLVRDSNS
        IINNMNKNI +HSD  S STVDDLVGIRNFVSDDTFLVRDSNS
Subjt:  IINNMNKNIHNHSD--STSTVDDLVGIRNFVSDDTFLVRDSNS

SwissProt top hitse value%identityAlignment
A0ZZ44 Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, chloroplastic5.1e-0461.36Show/hide
Query:  NNMNKNIHNHSDST---STVDDLV---GIRNFVSDDTFLVRDSN
        N+ +KNIH+ SDS+   S VD LV    IRNF+SDDTFL+RDSN
Subjt:  NNMNKNIHNHSDST---STVDDLV---GIRNFVSDDTFLVRDSN

A6MM45 Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, chloroplastic2.3e-0457.45Show/hide
Query:  IINNMNKNIHNHSDSTSTVDDLV-------GIRNFVSDDTFLVRDSN
        IINNM+KNIH+  DS S+    V       GI+ F+SDDTFLVRDSN
Subjt:  IINNMNKNIHNHSDSTSTVDDLV-------GIRNFVSDDTFLVRDSN

Q09X08 Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, chloroplastic1.3e-0463.83Show/hide
Query:  IINNMNKNIHNHSDST----STVDDLVG---IRNFVSDDTFLVRDSN
        IIN+M+K+I + SDS     S VD LVG   IRNF+SDDTFLVRDSN
Subjt:  IINNMNKNIHNHSDST----STVDDLVG---IRNFVSDDTFLVRDSN

Q0ZJ11 Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, chloroplastic3.0e-0459.57Show/hide
Query:  IINNMNKNIHN----HSDSTSTVDDLVG---IRNFVSDDTFLVRDSN
        +INN +KNI+N     S S S VD L G   IRNF+SDDTFLVRD N
Subjt:  IINNMNKNIHN----HSDSTSTVDDLVG---IRNFVSDDTFLVRDSN

Q2QD80 Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, chloroplastic3.3e-1184.44Show/hide
Query:  IINNMNKNIHNHSD----STSTVDDLVGIRNFVSDDTFLVRDSNS
        IINNMNKNI +HSD    S STVDDLVGIRNFVSDDTFLVRDSNS
Subjt:  IINNMNKNIHNHSD----STSTVDDLVGIRNFVSDDTFLVRDSNS

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATTATAAATAATATGAATAAAAACATTCATAATCATAGTGATAGTACAAGTACTGTTGATGATTTAGTCGGCATTCGGAATTTCGTATCTGATGACACTTTTTTAGTCAG
GGATAGTAATAGC
mRNA sequenceShow/hide mRNA sequence
ATTATAAATAATATGAATAAAAACATTCATAATCATAGTGATAGTACAAGTACTGTTGATGATTTAGTCGGCATTCGGAATTTCGTATCTGATGACACTTTTTTAGTCAG
GGATAGTAATAGC
Protein sequenceShow/hide protein sequence
IINNMNKNIHNHSDSTSTVDDLVGIRNFVSDDTFLVRDSNS