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MS001137 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS001137
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionCHCH domain-containing protein
Genome locationscaffold36:1722043..1722659
RNA-Seq ExpressionMS001137
SyntenyMS001137
Gene Ontology termsGO:0007005 - mitochondrion organization (biological process)
GO:0005634 - nucleus (cellular component)
GO:0005739 - mitochondrion (cellular component)
InterPro domainsIPR009069 - Cysteine alpha-hairpin motif superfamily
IPR010625 - CHCH


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0065106.1 coiled-coil-helix-coiled-coil-helix domain-containing protein 10 [Cucumis melo var. makuwa]1.8e-4684.17Show/hide
Query:  VSSAPPPAPVQGGGGGSMLGGLGATIAQGMAFGTGSAVAHRAVDAVMGPRVIQHESVDSSAAPSSVPTAASNVGGSEVCNGQSKALQDCLNHYGSDIGKC
        V+SAPPPAPVQGGGGGSMLGGLGATIAQGMAFGTGSAVAHRAVDAVMGPR IQHE++DSSA  SS P+ ASN GGS+ CN QSK+ QDCLNHYGSDI KC
Subjt:  VSSAPPPAPVQGGGGGSMLGGLGATIAQGMAFGTGSAVAHRAVDAVMGPRVIQHESVDSSAAPSSVPTAASNVGGSEVCNGQSKALQDCLNHYGSDIGKC

Query:  QFYMDMLQECRRSSGPGLGA
        QFY+DMLQECRRSSG  LGA
Subjt:  QFYMDMLQECRRSSGPGLGA

XP_008444901.1 PREDICTED: uncharacterized protein C6C3.02c-like [Cucumis melo]4.0e-4683.33Show/hide
Query:  VSSAPPPAPVQGGGGGSMLGGLGATIAQGMAFGTGSAVAHRAVDAVMGPRVIQHESVDSSAAPSSVPTAASNVGGSEVCNGQSKALQDCLNHYGSDIGKC
        V+SAPPPAPVQGGGGGSMLGGLGATIAQGMAFGTGSAVAHRAVDAVMGPR IQHE++DSSA  SS P+ A+N GGS+ CN QSK+ QDCLNHYGSDI KC
Subjt:  VSSAPPPAPVQGGGGGSMLGGLGATIAQGMAFGTGSAVAHRAVDAVMGPRVIQHESVDSSAAPSSVPTAASNVGGSEVCNGQSKALQDCLNHYGSDIGKC

Query:  QFYMDMLQECRRSSGPGLGA
        QFY+DMLQECRRSSG  LGA
Subjt:  QFYMDMLQECRRSSGPGLGA

XP_022132139.1 uncharacterized protein C6C3.02c-like [Momordica charantia]2.7e-58100Show/hide
Query:  VSSAPPPAPVQGGGGGSMLGGLGATIAQGMAFGTGSAVAHRAVDAVMGPRVIQHESVDSSAAPSSVPTAASNVGGSEVCNGQSKALQDCLNHYGSDIGKC
        VSSAPPPAPVQGGGGGSMLGGLGATIAQGMAFGTGSAVAHRAVDAVMGPRVIQHESVDSSAAPSSVPTAASNVGGSEVCNGQSKALQDCLNHYGSDIGKC
Subjt:  VSSAPPPAPVQGGGGGSMLGGLGATIAQGMAFGTGSAVAHRAVDAVMGPRVIQHESVDSSAAPSSVPTAASNVGGSEVCNGQSKALQDCLNHYGSDIGKC

Query:  QFYMDMLQECRRSSGPGLGA
        QFYMDMLQECRRSSGPGLGA
Subjt:  QFYMDMLQECRRSSGPGLGA

XP_022962551.1 coiled-coil-helix-coiled-coil-helix domain-containing protein 10, mitochondrial [Cucurbita moschata]1.4e-4685.59Show/hide
Query:  SAPPPAPVQGGGGGSMLGGLGATIAQGMAFGTGSAVAHRAVDAVMGPRVIQHESVDSSAAPSSVPTAASNVGGSEVCNGQSKALQDCLNHYGSDIGKCQF
        SAPPPAPVQGGGGGSMLGGLGATIAQGMAFGTGSAVAHRAVDAVMGPRVIQHE+VDSS  PSS P+ ASN GGS+ CN QSK+ QDCLNHYGSDI KCQF
Subjt:  SAPPPAPVQGGGGGSMLGGLGATIAQGMAFGTGSAVAHRAVDAVMGPRVIQHESVDSSAAPSSVPTAASNVGGSEVCNGQSKALQDCLNHYGSDIGKCQF

Query:  YMDMLQECRRSSGPGLGA
        Y+DMLQECR+SSG  LGA
Subjt:  YMDMLQECRRSSGPGLGA

XP_022997290.1 coiled-coil-helix-coiled-coil-helix domain-containing protein 10, mitochondrial-like [Cucurbita maxima]6.8e-4684.03Show/hide
Query:  SSAPPPAPVQGGGGGSMLGGLGATIAQGMAFGTGSAVAHRAVDAVMGPRVIQHESVDSSAAPSSVPTAASNVGGSEVCNGQSKALQDCLNHYGSDIGKCQ
        +SAPPPAPVQGGGGGSMLGGLGATIAQGMAFGTGSAVAHRAVDAVMGPRVIQHE+VDSS  PSS P+ A N GGS+ CN QSK+ QDCLNHYGSDI KCQ
Subjt:  SSAPPPAPVQGGGGGSMLGGLGATIAQGMAFGTGSAVAHRAVDAVMGPRVIQHESVDSSAAPSSVPTAASNVGGSEVCNGQSKALQDCLNHYGSDIGKCQ

Query:  FYMDMLQECRRSSGPGLGA
        FY+DMLQECR+SSG  LGA
Subjt:  FYMDMLQECRRSSGPGLGA

TrEMBL top hitse value%identityAlignment
A0A1S3BAZ1 uncharacterized protein C6C3.02c-like1.9e-4683.33Show/hide
Query:  VSSAPPPAPVQGGGGGSMLGGLGATIAQGMAFGTGSAVAHRAVDAVMGPRVIQHESVDSSAAPSSVPTAASNVGGSEVCNGQSKALQDCLNHYGSDIGKC
        V+SAPPPAPVQGGGGGSMLGGLGATIAQGMAFGTGSAVAHRAVDAVMGPR IQHE++DSSA  SS P+ A+N GGS+ CN QSK+ QDCLNHYGSDI KC
Subjt:  VSSAPPPAPVQGGGGGSMLGGLGATIAQGMAFGTGSAVAHRAVDAVMGPRVIQHESVDSSAAPSSVPTAASNVGGSEVCNGQSKALQDCLNHYGSDIGKC

Query:  QFYMDMLQECRRSSGPGLGA
        QFY+DMLQECRRSSG  LGA
Subjt:  QFYMDMLQECRRSSGPGLGA

A0A5A7VFK2 Coiled-coil-helix-coiled-coil-helix domain-containing protein 108.7e-4784.17Show/hide
Query:  VSSAPPPAPVQGGGGGSMLGGLGATIAQGMAFGTGSAVAHRAVDAVMGPRVIQHESVDSSAAPSSVPTAASNVGGSEVCNGQSKALQDCLNHYGSDIGKC
        V+SAPPPAPVQGGGGGSMLGGLGATIAQGMAFGTGSAVAHRAVDAVMGPR IQHE++DSSA  SS P+ ASN GGS+ CN QSK+ QDCLNHYGSDI KC
Subjt:  VSSAPPPAPVQGGGGGSMLGGLGATIAQGMAFGTGSAVAHRAVDAVMGPRVIQHESVDSSAAPSSVPTAASNVGGSEVCNGQSKALQDCLNHYGSDIGKC

Query:  QFYMDMLQECRRSSGPGLGA
        QFY+DMLQECRRSSG  LGA
Subjt:  QFYMDMLQECRRSSGPGLGA

A0A6J1BS82 uncharacterized protein C6C3.02c-like1.3e-58100Show/hide
Query:  VSSAPPPAPVQGGGGGSMLGGLGATIAQGMAFGTGSAVAHRAVDAVMGPRVIQHESVDSSAAPSSVPTAASNVGGSEVCNGQSKALQDCLNHYGSDIGKC
        VSSAPPPAPVQGGGGGSMLGGLGATIAQGMAFGTGSAVAHRAVDAVMGPRVIQHESVDSSAAPSSVPTAASNVGGSEVCNGQSKALQDCLNHYGSDIGKC
Subjt:  VSSAPPPAPVQGGGGGSMLGGLGATIAQGMAFGTGSAVAHRAVDAVMGPRVIQHESVDSSAAPSSVPTAASNVGGSEVCNGQSKALQDCLNHYGSDIGKC

Query:  QFYMDMLQECRRSSGPGLGA
        QFYMDMLQECRRSSGPGLGA
Subjt:  QFYMDMLQECRRSSGPGLGA

A0A6J1HDK4 coiled-coil-helix-coiled-coil-helix domain-containing protein 10, mitochondrial6.6e-4785.59Show/hide
Query:  SAPPPAPVQGGGGGSMLGGLGATIAQGMAFGTGSAVAHRAVDAVMGPRVIQHESVDSSAAPSSVPTAASNVGGSEVCNGQSKALQDCLNHYGSDIGKCQF
        SAPPPAPVQGGGGGSMLGGLGATIAQGMAFGTGSAVAHRAVDAVMGPRVIQHE+VDSS  PSS P+ ASN GGS+ CN QSK+ QDCLNHYGSDI KCQF
Subjt:  SAPPPAPVQGGGGGSMLGGLGATIAQGMAFGTGSAVAHRAVDAVMGPRVIQHESVDSSAAPSSVPTAASNVGGSEVCNGQSKALQDCLNHYGSDIGKCQF

Query:  YMDMLQECRRSSGPGLGA
        Y+DMLQECR+SSG  LGA
Subjt:  YMDMLQECRRSSGPGLGA

A0A6J1K966 coiled-coil-helix-coiled-coil-helix domain-containing protein 10, mitochondrial-like3.3e-4684.03Show/hide
Query:  SSAPPPAPVQGGGGGSMLGGLGATIAQGMAFGTGSAVAHRAVDAVMGPRVIQHESVDSSAAPSSVPTAASNVGGSEVCNGQSKALQDCLNHYGSDIGKCQ
        +SAPPPAPVQGGGGGSMLGGLGATIAQGMAFGTGSAVAHRAVDAVMGPRVIQHE+VDSS  PSS P+ A N GGS+ CN QSK+ QDCLNHYGSDI KCQ
Subjt:  SSAPPPAPVQGGGGGSMLGGLGATIAQGMAFGTGSAVAHRAVDAVMGPRVIQHESVDSSAAPSSVPTAASNVGGSEVCNGQSKALQDCLNHYGSDIGKCQ

Query:  FYMDMLQECRRSSGPGLGA
        FY+DMLQECR+SSG  LGA
Subjt:  FYMDMLQECRRSSGPGLGA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT5G09570.1 Cox19-like CHCH family protein3.6e-2954.17Show/hide
Query:  VSSAPPPAPVQGGGGGSMLGGLGATIAQGMAFGTGSAVAHRAVDAVMGPRVIQHESVDSSAAPSSVPTAASNVGGSEVCNGQSKALQDCLNHYGSDIGKC
        V+ APPPA  Q   GGS LG +GA+I +G+A+GTG+A  HR VD+VMGPR  +HE+V      S VP+AA+ +     C+  SKA QDC+NH+GSDI KC
Subjt:  VSSAPPPAPVQGGGGGSMLGGLGATIAQGMAFGTGSAVAHRAVDAVMGPRVIQHESVDSSAAPSSVPTAASNVGGSEVCNGQSKALQDCLNHYGSDIGKC

Query:  QFYMDMLQECRRSSGPGLGA
        QFYMDML EC+++SG  + A
Subjt:  QFYMDMLQECRRSSGPGLGA

AT5G64400.1 CONTAINS InterPro DOMAIN/s: CHCH (InterPro:IPR010625)3.7e-3461.98Show/hide
Query:  VSSAPPPAPVQ-GGGGGSMLGGLGATIAQGMAFGTGSAVAHRAVDAVMGPRVIQHESVDSSAAPSSVPTAASNVGGSEVCNGQSKALQDCLNHYGSDIGK
        V  APPPAP Q  GGGG M  G+G+TIAQGMAFGTGSAVAHRAVD+VMGPR IQHE+V++++A S+ P  ++ +  S  C+  +KA QDC+  YGS+I K
Subjt:  VSSAPPPAPVQ-GGGGGSMLGGLGATIAQGMAFGTGSAVAHRAVDAVMGPRVIQHESVDSSAAPSSVPTAASNVGGSEVCNGQSKALQDCLNHYGSDIGK

Query:  CQFYMDMLQECRRSSGPGLGA
        CQFYMDML ECR++SG  +GA
Subjt:  CQFYMDMLQECRRSSGPGLGA

AT5G64400.2 BEST Arabidopsis thaliana protein match is: Cox19-like CHCH family protein (TAIR:AT5G09570.1)2.6e-1960.67Show/hide
Query:  VSSAPPPAPVQ-GGGGGSMLGGLGATIAQGMAFGTGSAVAHRAVDAVMGPRVIQHESVDSSAAPSSVPTAASNVGGSEVCNGQSKALQD
        V  APPPAP Q  GGGG M  G+G+TIAQGMAFGTGSAVAHRAVD+VMGPR IQHE+V++++A S+ P  ++ +  S  C+  +KA QD
Subjt:  VSSAPPPAPVQ-GGGGGSMLGGLGATIAQGMAFGTGSAVAHRAVDAVMGPRVIQHESVDSSAAPSSVPTAASNVGGSEVCNGQSKALQD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GTTAGTTCTGCTCCTCCACCAGCACCTGTACAAGGTGGTGGAGGTGGGTCTATGCTCGGAGGACTCGGCGCCACTATTGCTCAAGGTATGGCCTTTGGTACTGGAAGTGC
GGTGGCTCACAGGGCTGTTGATGCTGTAATGGGTCCTCGGGTCATTCAGCATGAGTCTGTTGATTCATCAGCTGCCCCTTCTTCAGTGCCTACTGCAGCAAGCAATGTTG
GAGGTTCTGAAGTTTGTAATGGTCAATCAAAGGCCTTGCAAGATTGCCTGAATCACTATGGAAGTGACATTGGCAAGTGCCAGTTCTACATGGATATGTTGCAGGAATGT
CGCAGAAGCTCGGGTCCTGGTTTGGGTGCT
mRNA sequenceShow/hide mRNA sequence
GTTAGTTCTGCTCCTCCACCAGCACCTGTACAAGGTGGTGGAGGTGGGTCTATGCTCGGAGGACTCGGCGCCACTATTGCTCAAGGTATGGCCTTTGGTACTGGAAGTGC
GGTGGCTCACAGGGCTGTTGATGCTGTAATGGGTCCTCGGGTCATTCAGCATGAGTCTGTTGATTCATCAGCTGCCCCTTCTTCAGTGCCTACTGCAGCAAGCAATGTTG
GAGGTTCTGAAGTTTGTAATGGTCAATCAAAGGCCTTGCAAGATTGCCTGAATCACTATGGAAGTGACATTGGCAAGTGCCAGTTCTACATGGATATGTTGCAGGAATGT
CGCAGAAGCTCGGGTCCTGGTTTGGGTGCT
Protein sequenceShow/hide protein sequence
VSSAPPPAPVQGGGGGSMLGGLGATIAQGMAFGTGSAVAHRAVDAVMGPRVIQHESVDSSAAPSSVPTAASNVGGSEVCNGQSKALQDCLNHYGSDIGKCQFYMDMLQEC
RRSSGPGLGA