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MS001147 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS001147
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionRibosomal RNA small subunit methyltransferase A
Genome locationscaffold36:1801184..1801747
RNA-Seq ExpressionMS001147
SyntenyMS001147
Gene Ontology termsGO:0032259 - methylation (biological process)
GO:0008168 - methyltransferase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0065096.1 Ribosomal RNA small subunit methyltransferase A [Cucumis melo var. makuwa]8.4e-8392.26Show/hide
Query:  MAVAFPQLSWWLWSGKNKEPRSSN-GSPLNASLDTAIREPDTLKFPLVNGANISSSSRRVKRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSI
        M+VAFPQLSWWLWSGK+KEPRSSN GS LNASLDTA RE DTLKFPLVNGANISSSSRRVKRKWHSREERK+DREYDIVLVPSDGGCVSGSESDDSDWSI
Subjt:  MAVAFPQLSWWLWSGKNKEPRSSN-GSPLNASLDTAIREPDTLKFPLVNGANISSSSRRVKRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSI

Query:  GWSEPHGPGFQSDDDPDNSFAVLVPCYGRMYNDFVDETKNSILSAVGNINDSFSAGKSCSFSSLHFDG
        GWSEPHGPGFQSDD+ DNSFAVLVPCYGR+YNDFVDETKNSILSAVGNINDSFSAGKSC FSSLH  G
Subjt:  GWSEPHGPGFQSDDDPDNSFAVLVPCYGRMYNDFVDETKNSILSAVGNINDSFSAGKSCSFSSLHFDG

KAG7020253.1 hypothetical protein SDJN02_16936, partial [Cucurbita argyrosperma subsp. argyrosperma]6.6e-8091.25Show/hide
Query:  MAVAFPQLSWWLWSGKNKEPRSSNGSPLNASLDTAIREPDTLKFPLVNGANISSSSRRVKRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIG
        M+VAFPQLSWW WSGK+KEPR+SNGS  NASLDT IREPDTLKFPL NGANISSSSRRV+RKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIG
Subjt:  MAVAFPQLSWWLWSGKNKEPRSSNGSPLNASLDTAIREPDTLKFPLVNGANISSSSRRVKRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIG

Query:  WSEPHGPGFQSDDDPDNSFAVLVPCYGRMYNDFVDETKNSILSAVGNINDSFSAGKSCSF
        WSEPHGPGFQSDD+ DNSFAVLVPCYGR+YNDFVDETKNSILSA GNINDSFSAGKSC F
Subjt:  WSEPHGPGFQSDDDPDNSFAVLVPCYGRMYNDFVDETKNSILSAVGNINDSFSAGKSCSF

XP_022132228.1 uncharacterized protein LOC111005141 isoform X1 [Momordica charantia]4.9e-8395.06Show/hide
Query:  MAVAFPQLSWWLWSGKNKEPRSSNGSPLNASLDTAIREPDTLKFPLVNGANISSSSRRVKRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIG
        MAVAFPQLSWWLWSGKNKEPRSSNGSPLNASLDTAIREPDTLKFPLVNGANISSSSRRVKRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIG
Subjt:  MAVAFPQLSWWLWSGKNKEPRSSNGSPLNASLDTAIREPDTLKFPLVNGANISSSSRRVKRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIG

Query:  WSEPHGPGFQSDDDPDNSFAVLVPCYGRMYNDFVDETKNSILSAVGNINDSFSAG-KSCSFS
        WSEP+GPGFQSDDDPDNSFAVLVPCYG MYNDFVDETKNSILSAVGNINDSFSA    C+F+
Subjt:  WSEPHGPGFQSDDDPDNSFAVLVPCYGRMYNDFVDETKNSILSAVGNINDSFSAG-KSCSFS

XP_022132233.1 uncharacterized protein LOC111005141 isoform X2 [Momordica charantia]1.1e-8298.7Show/hide
Query:  MAVAFPQLSWWLWSGKNKEPRSSNGSPLNASLDTAIREPDTLKFPLVNGANISSSSRRVKRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIG
        MAVAFPQLSWWLWSGKNKEPRSSNGSPLNASLDTAIREPDTLKFPLVNGANISSSSRRVKRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIG
Subjt:  MAVAFPQLSWWLWSGKNKEPRSSNGSPLNASLDTAIREPDTLKFPLVNGANISSSSRRVKRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIG

Query:  WSEPHGPGFQSDDDPDNSFAVLVPCYGRMYNDFVDETKNSILSAVGNINDSFSA
        WSEP+GPGFQSDDDPDNSFAVLVPCYG MYNDFVDETKNSILSAVGNINDSFSA
Subjt:  WSEPHGPGFQSDDDPDNSFAVLVPCYGRMYNDFVDETKNSILSAVGNINDSFSA

XP_038886443.1 uncharacterized protein LOC120076637 [Benincasa hispida]3.1e-7794.19Show/hide
Query:  MAVAFPQLSWWLWSGKNKEPRSSN-GSPLNASLDTAIREPDTLKFPLVNGANISSSSRRVKRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSI
        M+VAFPQLSWWLWSGK+KEPRSSN GS LNASLDTA RE DTLKFPLVNGANISSSSRRVKRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSI
Subjt:  MAVAFPQLSWWLWSGKNKEPRSSN-GSPLNASLDTAIREPDTLKFPLVNGANISSSSRRVKRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSI

Query:  GWSEPHGPGFQSDDDPDNSFAVLVPCYGRMYNDFVDETKNSILSAVGNINDSFSA
        GWSEPHGPGFQSDD+ DNSFAVLVPCYGR+YNDFVDETKNSILSAVGNINDSFSA
Subjt:  GWSEPHGPGFQSDDDPDNSFAVLVPCYGRMYNDFVDETKNSILSAVGNINDSFSA

TrEMBL top hitse value%identityAlignment
A0A1S3BB05 uncharacterized protein LOC1034881212.5e-7792.9Show/hide
Query:  MAVAFPQLSWWLWSGKNKEPRSSN-GSPLNASLDTAIREPDTLKFPLVNGANISSSSRRVKRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSI
        M+VAFPQLSWWLWSGK+KEPRSSN GS LNASLDTA RE DTLKFPLVNGANISSSSRRVKRKWHSREERK+DREYDIVLVPSDGGCVSGSESDDSDWSI
Subjt:  MAVAFPQLSWWLWSGKNKEPRSSN-GSPLNASLDTAIREPDTLKFPLVNGANISSSSRRVKRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSI

Query:  GWSEPHGPGFQSDDDPDNSFAVLVPCYGRMYNDFVDETKNSILSAVGNINDSFSA
        GWSEPHGPGFQSDD+ DNSFAVLVPCYGR+YNDFVDETKNSILSA+GNINDSFSA
Subjt:  GWSEPHGPGFQSDDDPDNSFAVLVPCYGRMYNDFVDETKNSILSAVGNINDSFSA

A0A5A7VFJ3 Ribosomal RNA small subunit methyltransferase A4.0e-8392.26Show/hide
Query:  MAVAFPQLSWWLWSGKNKEPRSSN-GSPLNASLDTAIREPDTLKFPLVNGANISSSSRRVKRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSI
        M+VAFPQLSWWLWSGK+KEPRSSN GS LNASLDTA RE DTLKFPLVNGANISSSSRRVKRKWHSREERK+DREYDIVLVPSDGGCVSGSESDDSDWSI
Subjt:  MAVAFPQLSWWLWSGKNKEPRSSN-GSPLNASLDTAIREPDTLKFPLVNGANISSSSRRVKRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSI

Query:  GWSEPHGPGFQSDDDPDNSFAVLVPCYGRMYNDFVDETKNSILSAVGNINDSFSAGKSCSFSSLHFDG
        GWSEPHGPGFQSDD+ DNSFAVLVPCYGR+YNDFVDETKNSILSAVGNINDSFSAGKSC FSSLH  G
Subjt:  GWSEPHGPGFQSDDDPDNSFAVLVPCYGRMYNDFVDETKNSILSAVGNINDSFSAGKSCSFSSLHFDG

A0A6J1BRV5 uncharacterized protein LOC111005141 isoform X12.4e-8395.06Show/hide
Query:  MAVAFPQLSWWLWSGKNKEPRSSNGSPLNASLDTAIREPDTLKFPLVNGANISSSSRRVKRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIG
        MAVAFPQLSWWLWSGKNKEPRSSNGSPLNASLDTAIREPDTLKFPLVNGANISSSSRRVKRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIG
Subjt:  MAVAFPQLSWWLWSGKNKEPRSSNGSPLNASLDTAIREPDTLKFPLVNGANISSSSRRVKRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIG

Query:  WSEPHGPGFQSDDDPDNSFAVLVPCYGRMYNDFVDETKNSILSAVGNINDSFSAG-KSCSFS
        WSEP+GPGFQSDDDPDNSFAVLVPCYG MYNDFVDETKNSILSAVGNINDSFSA    C+F+
Subjt:  WSEPHGPGFQSDDDPDNSFAVLVPCYGRMYNDFVDETKNSILSAVGNINDSFSAG-KSCSFS

A0A6J1BVP6 uncharacterized protein LOC111005141 isoform X25.3e-8398.7Show/hide
Query:  MAVAFPQLSWWLWSGKNKEPRSSNGSPLNASLDTAIREPDTLKFPLVNGANISSSSRRVKRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIG
        MAVAFPQLSWWLWSGKNKEPRSSNGSPLNASLDTAIREPDTLKFPLVNGANISSSSRRVKRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIG
Subjt:  MAVAFPQLSWWLWSGKNKEPRSSNGSPLNASLDTAIREPDTLKFPLVNGANISSSSRRVKRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIG

Query:  WSEPHGPGFQSDDDPDNSFAVLVPCYGRMYNDFVDETKNSILSAVGNINDSFSA
        WSEP+GPGFQSDDDPDNSFAVLVPCYG MYNDFVDETKNSILSAVGNINDSFSA
Subjt:  WSEPHGPGFQSDDDPDNSFAVLVPCYGRMYNDFVDETKNSILSAVGNINDSFSA

A0A6J1KME1 uncharacterized protein LOC1114959311.9e-7791.56Show/hide
Query:  MAVAFPQLSWWLWSGKNKEPRSSNGSPLNASLDTAIREPDTLKFPLVNGANISSSSRRVKRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIG
        M+VAFPQLSWW WSGK+KEPR+SNGS  NASLDT IREPDTLKFPL NGANISSSSRRV+RKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIG
Subjt:  MAVAFPQLSWWLWSGKNKEPRSSNGSPLNASLDTAIREPDTLKFPLVNGANISSSSRRVKRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIG

Query:  WSEPHGPGFQSDDDPDNSFAVLVPCYGRMYNDFVDETKNSILSAVGNINDSFSA
        WSEPHGPGFQSDD+ DNSFAVLVPCYGR+YNDFVDETKNSILSA GNINDSFSA
Subjt:  WSEPHGPGFQSDDDPDNSFAVLVPCYGRMYNDFVDETKNSILSAVGNINDSFSA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G38060.1 unknown protein3.5e-1048Show/hide
Query:  SGSES------DDSDWSIGWSEPHGPGFQSDDD-PDNSFAVLVPCYGRMYNDFVDETKNSILSAVGNINDSFSAG
        SGSES      D  +WS+GW+EPHGP FQSDD+  D  F VLVPCY R   +      N +LSAV N+ +    G
Subjt:  SGSES------DDSDWSIGWSEPHGPGFQSDDD-PDNSFAVLVPCYGRMYNDFVDETKNSILSAVGNINDSFSAG

AT4G38060.2 unknown protein4.5e-1051.47Show/hide
Query:  SGSES------DDSDWSIGWSEPHGPGFQSDDD-PDNSFAVLVPCYGRMYNDFVDETKNSILSAVGNI
        SGSES      D  +WS+GW+EPHGP FQSDD+  D  F VLVPCY R   +      N +LSAV N+
Subjt:  SGSES------DDSDWSIGWSEPHGPGFQSDDD-PDNSFAVLVPCYGRMYNDFVDETKNSILSAVGNI

AT5G65480.1 unknown protein1.6e-1535.86Show/hide
Query:  MAVAFPQLSWWLWSGKNKEPRSSNGS--PLNASLDTAIREPDTLKFPLVNGANISSSSRRVKRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWS
        MAV+FP+L  WL  G N + R    S    ++SL  ++++  T K       + SSS ++ KR W  R       E D +      G V   E DD +WS
Subjt:  MAVAFPQLSWWLWSGKNKEPRSSNGS--PLNASLDTAIREPDTLKFPLVNGANISSSSRRVKRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWS

Query:  IGWSEPHGPGFQSDDDPDNSFAVLVPCYGRMYNDFVDETKNSILS
        IGW EPHGPGF+++DD    F VLVP Y ++ +   ++  N   S
Subjt:  IGWSEPHGPGFQSDDDPDNSFAVLVPCYGRMYNDFVDETKNSILS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTGTGGCATTTCCCCAACTCTCGTGGTGGTTGTGGAGTGGGAAGAATAAAGAACCTCGAAGCTCTAATGGGTCTCCTCTAAATGCTTCCCTAGATACAGCCATCCG
GGAACCAGATACTCTAAAATTTCCTTTAGTTAATGGGGCTAACATATCATCCTCGTCTAGAAGGGTGAAGCGGAAATGGCATAGTCGTGAAGAGAGGAAAATTGATAGGG
AGTATGACATTGTTCTTGTTCCATCTGACGGAGGATGTGTTTCAGGGTCAGAGTCTGATGACTCAGATTGGTCAATTGGATGGTCGGAACCCCACGGACCTGGATTCCAG
AGCGATGACGATCCAGACAACAGTTTCGCTGTGTTGGTTCCATGTTATGGACGCATGTACAATGATTTTGTAGATGAAACTAAAAACAGTATCCTAAGTGCTGTTGGGAA
CATCAACGATAGCTTTTCTGCTGGTAAGAGCTGTTCCTTCTCAAGCTTGCATTTTGATGGTTGTTGCGTGTTAGTTATTGCTTTTGCCTTCCAAAATATTCTTCTAGTCC
TCTTTCGTGAACAA
mRNA sequenceShow/hide mRNA sequence
ATGGCTGTGGCATTTCCCCAACTCTCGTGGTGGTTGTGGAGTGGGAAGAATAAAGAACCTCGAAGCTCTAATGGGTCTCCTCTAAATGCTTCCCTAGATACAGCCATCCG
GGAACCAGATACTCTAAAATTTCCTTTAGTTAATGGGGCTAACATATCATCCTCGTCTAGAAGGGTGAAGCGGAAATGGCATAGTCGTGAAGAGAGGAAAATTGATAGGG
AGTATGACATTGTTCTTGTTCCATCTGACGGAGGATGTGTTTCAGGGTCAGAGTCTGATGACTCAGATTGGTCAATTGGATGGTCGGAACCCCACGGACCTGGATTCCAG
AGCGATGACGATCCAGACAACAGTTTCGCTGTGTTGGTTCCATGTTATGGACGCATGTACAATGATTTTGTAGATGAAACTAAAAACAGTATCCTAAGTGCTGTTGGGAA
CATCAACGATAGCTTTTCTGCTGGTAAGAGCTGTTCCTTCTCAAGCTTGCATTTTGATGGTTGTTGCGTGTTAGTTATTGCTTTTGCCTTCCAAAATATTCTTCTAGTCC
TCTTTCGTGAACAA
Protein sequenceShow/hide protein sequence
MAVAFPQLSWWLWSGKNKEPRSSNGSPLNASLDTAIREPDTLKFPLVNGANISSSSRRVKRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIGWSEPHGPGFQ
SDDDPDNSFAVLVPCYGRMYNDFVDETKNSILSAVGNINDSFSAGKSCSFSSLHFDGCCVLVIAFAFQNILLVLFREQ