; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS001214 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS001214
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionexosome complex exonuclease RRP46 homolog
Genome locationscaffold36:2334341..2337087
RNA-Seq ExpressionMS001214
SyntenyMS001214
Gene Ontology termsGO:0090501 - RNA phosphodiester bond hydrolysis (biological process)
GO:0071051 - polyadenylation-dependent snoRNA 3'-end processing (biological process)
GO:0071028 - nuclear mRNA surveillance (biological process)
GO:0034475 - U4 snRNA 3'-end processing (biological process)
GO:0034427 - nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5' (biological process)
GO:0016075 - rRNA catabolic process (biological process)
GO:0006259 - DNA metabolic process (biological process)
GO:0000177 - cytoplasmic exosome (RNase complex) (cellular component)
GO:0005840 - ribosome (cellular component)
GO:0005730 - nucleolus (cellular component)
GO:0000176 - nuclear exosome (RNase complex) (cellular component)
GO:0004540 - ribonuclease activity (molecular function)
GO:0004536 - deoxyribonuclease activity (molecular function)
GO:0004527 - exonuclease activity (molecular function)
GO:0042802 - identical protein binding (molecular function)
GO:0003727 - single-stranded RNA binding (molecular function)
GO:0003690 - double-stranded DNA binding (molecular function)
InterPro domainsIPR001247 - Exoribonuclease, phosphorolytic domain 1
IPR020568 - Ribosomal protein S5 domain 2-type fold
IPR027408 - PNPase/RNase PH domain superfamily
IPR036345 - Exoribonuclease, PH domain 2 superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022131722.1 exosome complex exonuclease RRP46 homolog isoform X1 [Momordica charantia]2.2e-12596.69Show/hide
Query:  MEMDRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNT
        MEMDRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNT
Subjt:  MEMDRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNT

Query:  TTSIIVQ-------LLPCAINASCAALVDAGIPLKHLAVAICCCLSESGYVILDPTKLEEQKMKAFVHLVFPNSPVSVIPKGSTQLVDEPLEHGIITSVT
        TTSIIVQ       LLPCAINASCAALVDAGIPLKHLAVAICCCLSESGYVILDPTKLEEQKMKAFVHLVFPNSPVSVIPKGSTQ+VDEPLEHGIITSVT
Subjt:  TTSIIVQ-------LLPCAINASCAALVDAGIPLKHLAVAICCCLSESGYVILDPTKLEEQKMKAFVHLVFPNSPVSVIPKGSTQLVDEPLEHGIITSVT

Query:  QGAMSVDDYIHCLERGRAATAKMSDFLRRSLQPQLPADSSKA
        QGAMSVDDYIHCLERGRAATAKMSDFLRRSLQPQLPADSSKA
Subjt:  QGAMSVDDYIHCLERGRAATAKMSDFLRRSLQPQLPADSSKA

XP_022951618.1 exosome complex exonuclease RRP46 homolog [Cucurbita moschata]1.5e-11891.36Show/hide
Query:  MEMDRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNT
        ME+DRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTK+LAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNT
Subjt:  MEMDRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNT

Query:  TTSIIVQ-------LLPCAINASCAALVDAGIPLKHLAVAICCCLSESGYVILDPTKLEEQKMKAFVHLVFPNSPVSVIPKGSTQLVDEPLEHGIITSVT
        TTSI+VQ       LLPCAINASCAALVDAGIPLKHLAVAI CCLSESGYVILDPTKLEEQKMKA VHLVFPNSPVSVIP+GSTQ+  EPLE+GIITS+T
Subjt:  TTSIIVQ-------LLPCAINASCAALVDAGIPLKHLAVAICCCLSESGYVILDPTKLEEQKMKAFVHLVFPNSPVSVIPKGSTQLVDEPLEHGIITSVT

Query:  QGAMSVDDYIHCLERGRAATAKMSDFLRRSLQPQLPADSSKAG
        QGAMSVDDYIHCLERGRAATAKMS FLRRSLQPQLP DSSK G
Subjt:  QGAMSVDDYIHCLERGRAATAKMSDFLRRSLQPQLPADSSKAG

XP_023002484.1 exosome complex exonuclease RRP46 homolog [Cucurbita maxima]3.5e-11891.36Show/hide
Query:  MEMDRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNT
        ME+DRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTK+LAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNT
Subjt:  MEMDRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNT

Query:  TTSIIVQ-------LLPCAINASCAALVDAGIPLKHLAVAICCCLSESGYVILDPTKLEEQKMKAFVHLVFPNSPVSVIPKGSTQLVDEPLEHGIITSVT
        TTSI+VQ       LLPCAINASCAALVDAGIPLKHLAVAI CCLSESGYVILDPTKLEEQKMKA VHLVFPNSPVSVIP+GSTQ+  EPLE+GIITS+T
Subjt:  TTSIIVQ-------LLPCAINASCAALVDAGIPLKHLAVAICCCLSESGYVILDPTKLEEQKMKAFVHLVFPNSPVSVIPKGSTQLVDEPLEHGIITSVT

Query:  QGAMSVDDYIHCLERGRAATAKMSDFLRRSLQPQLPADSSKAG
        QGAMSVDDYIHCLERGRAATAKMS FLRRSLQPQLP DSSK G
Subjt:  QGAMSVDDYIHCLERGRAATAKMSDFLRRSLQPQLPADSSKAG

XP_023538111.1 exosome complex exonuclease RRP46 homolog [Cucurbita pepo subsp. pepo]2.6e-11891.36Show/hide
Query:  MEMDRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNT
        MEMDRDDGRTANQLRPLACSCNVLNRA+GSASWSQGDTK+LAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNT
Subjt:  MEMDRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNT

Query:  TTSIIVQ-------LLPCAINASCAALVDAGIPLKHLAVAICCCLSESGYVILDPTKLEEQKMKAFVHLVFPNSPVSVIPKGSTQLVDEPLEHGIITSVT
        TTSI+VQ       LLPCAINASCAALVDAGIPLKHLAVAI CCLSESGYVILDPTKLEEQKMKA VHLVFPNSPVSVIP+GSTQ+  EPLE+GIITS+T
Subjt:  TTSIIVQ-------LLPCAINASCAALVDAGIPLKHLAVAICCCLSESGYVILDPTKLEEQKMKAFVHLVFPNSPVSVIPKGSTQLVDEPLEHGIITSVT

Query:  QGAMSVDDYIHCLERGRAATAKMSDFLRRSLQPQLPADSSKAG
        QGAMSVDDYIHCLERGRAATAKMS FLRRSLQPQLP DSSK G
Subjt:  QGAMSVDDYIHCLERGRAATAKMSDFLRRSLQPQLPADSSKAG

XP_038885208.1 exosome complex exonuclease RRP46 homolog [Benincasa hispida]1.3e-11791.36Show/hide
Query:  MEMDRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNT
        ME+DRDDGRT NQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILT NPNT
Subjt:  MEMDRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNT

Query:  TTSIIVQ-------LLPCAINASCAALVDAGIPLKHLAVAICCCLSESGYVILDPTKLEEQKMKAFVHLVFPNSPVSVIPKGSTQLVDEPLEHGIITSVT
        TTSIIVQ       LLPCAINASCAALVDAGIPLKHLAVAI CCLSESGYVILDPTKLEEQKMKAFVHLVFPNSPVSV+P+GS Q+VDEPLEHGIITSVT
Subjt:  TTSIIVQ-------LLPCAINASCAALVDAGIPLKHLAVAICCCLSESGYVILDPTKLEEQKMKAFVHLVFPNSPVSVIPKGSTQLVDEPLEHGIITSVT

Query:  QGAMSVDDYIHCLERGRAATAKMSDFLRRSLQPQLPADSSKAG
        QG+MSVDDYI CLERG AA+AKMS FLRRSLQPQLP DSSKAG
Subjt:  QGAMSVDDYIHCLERGRAATAKMSDFLRRSLQPQLPADSSKAG

TrEMBL top hitse value%identityAlignment
A0A0A0LLJ9 Uncharacterized protein7.0e-11790.12Show/hide
Query:  MEMDRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNT
        ME+DRDDGRT NQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILT NPNT
Subjt:  MEMDRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNT

Query:  TTSIIVQ-------LLPCAINASCAALVDAGIPLKHLAVAICCCLSESGYVILDPTKLEEQKMKAFVHLVFPNSPVSVIPKGSTQLVDEPLEHGIITSVT
        TTSIIVQ       LLPCAINASCAALVDAGIPLKHLAVAI CCLSE+GYVILDPTK+EE+KMKA VHLVFPN+PVSV+P+GSTQ V EPLEHGIITSVT
Subjt:  TTSIIVQ-------LLPCAINASCAALVDAGIPLKHLAVAICCCLSESGYVILDPTKLEEQKMKAFVHLVFPNSPVSVIPKGSTQLVDEPLEHGIITSVT

Query:  QGAMSVDDYIHCLERGRAATAKMSDFLRRSLQPQLPADSSKAG
        QGAMSVDDYIHCLERGRAAT KMS FLRRSLQPQLP +SSKAG
Subjt:  QGAMSVDDYIHCLERGRAATAKMSDFLRRSLQPQLPADSSKAG

A0A5A7VGL5 Exosome complex exonuclease RRP46-like protein3.5e-11689.71Show/hide
Query:  MEMDRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNT
        ME+DRDDGRT NQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILT NPNT
Subjt:  MEMDRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNT

Query:  TTSIIVQ-------LLPCAINASCAALVDAGIPLKHLAVAICCCLSESGYVILDPTKLEEQKMKAFVHLVFPNSPVSVIPKGSTQLVDEPLEHGIITSVT
        TTSIIVQ       LLPCAINASCAALVDAGIPLKHLAVAI CCLSE+GYVILDPTK+EE+KMKA VHLVFPN+PVSV+P+GSTQ V EPLEHG+ITSVT
Subjt:  TTSIIVQ-------LLPCAINASCAALVDAGIPLKHLAVAICCCLSESGYVILDPTKLEEQKMKAFVHLVFPNSPVSVIPKGSTQLVDEPLEHGIITSVT

Query:  QGAMSVDDYIHCLERGRAATAKMSDFLRRSLQPQLPADSSKAG
        QGAMSVDDYIHCLERGRAAT KMS FLRRSLQPQL  DSSKAG
Subjt:  QGAMSVDDYIHCLERGRAATAKMSDFLRRSLQPQLPADSSKAG

A0A6J1BU99 exosome complex exonuclease RRP46 homolog isoform X11.1e-12596.69Show/hide
Query:  MEMDRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNT
        MEMDRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNT
Subjt:  MEMDRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNT

Query:  TTSIIVQ-------LLPCAINASCAALVDAGIPLKHLAVAICCCLSESGYVILDPTKLEEQKMKAFVHLVFPNSPVSVIPKGSTQLVDEPLEHGIITSVT
        TTSIIVQ       LLPCAINASCAALVDAGIPLKHLAVAICCCLSESGYVILDPTKLEEQKMKAFVHLVFPNSPVSVIPKGSTQ+VDEPLEHGIITSVT
Subjt:  TTSIIVQ-------LLPCAINASCAALVDAGIPLKHLAVAICCCLSESGYVILDPTKLEEQKMKAFVHLVFPNSPVSVIPKGSTQLVDEPLEHGIITSVT

Query:  QGAMSVDDYIHCLERGRAATAKMSDFLRRSLQPQLPADSSKA
        QGAMSVDDYIHCLERGRAATAKMSDFLRRSLQPQLPADSSKA
Subjt:  QGAMSVDDYIHCLERGRAATAKMSDFLRRSLQPQLPADSSKA

A0A6J1GI69 exosome complex exonuclease RRP46 homolog7.5e-11991.36Show/hide
Query:  MEMDRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNT
        ME+DRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTK+LAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNT
Subjt:  MEMDRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNT

Query:  TTSIIVQ-------LLPCAINASCAALVDAGIPLKHLAVAICCCLSESGYVILDPTKLEEQKMKAFVHLVFPNSPVSVIPKGSTQLVDEPLEHGIITSVT
        TTSI+VQ       LLPCAINASCAALVDAGIPLKHLAVAI CCLSESGYVILDPTKLEEQKMKA VHLVFPNSPVSVIP+GSTQ+  EPLE+GIITS+T
Subjt:  TTSIIVQ-------LLPCAINASCAALVDAGIPLKHLAVAICCCLSESGYVILDPTKLEEQKMKAFVHLVFPNSPVSVIPKGSTQLVDEPLEHGIITSVT

Query:  QGAMSVDDYIHCLERGRAATAKMSDFLRRSLQPQLPADSSKAG
        QGAMSVDDYIHCLERGRAATAKMS FLRRSLQPQLP DSSK G
Subjt:  QGAMSVDDYIHCLERGRAATAKMSDFLRRSLQPQLPADSSKAG

A0A6J1KQK5 exosome complex exonuclease RRP46 homolog1.7e-11891.36Show/hide
Query:  MEMDRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNT
        ME+DRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTK+LAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNT
Subjt:  MEMDRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNT

Query:  TTSIIVQ-------LLPCAINASCAALVDAGIPLKHLAVAICCCLSESGYVILDPTKLEEQKMKAFVHLVFPNSPVSVIPKGSTQLVDEPLEHGIITSVT
        TTSI+VQ       LLPCAINASCAALVDAGIPLKHLAVAI CCLSESGYVILDPTKLEEQKMKA VHLVFPNSPVSVIP+GSTQ+  EPLE+GIITS+T
Subjt:  TTSIIVQ-------LLPCAINASCAALVDAGIPLKHLAVAICCCLSESGYVILDPTKLEEQKMKAFVHLVFPNSPVSVIPKGSTQLVDEPLEHGIITSVT

Query:  QGAMSVDDYIHCLERGRAATAKMSDFLRRSLQPQLPADSSKAG
        QGAMSVDDYIHCLERGRAATAKMS FLRRSLQPQLP DSSK G
Subjt:  QGAMSVDDYIHCLERGRAATAKMSDFLRRSLQPQLPADSSKAG

SwissProt top hitse value%identityAlignment
Q4JB27 Exosome complex component Rrp411.2e-1230.81Show/hide
Query:  RDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKN-ENPEKASIEVIW--------KPKTGQIGKLERECEMILKRTLQSICILT
        R DGR  ++LRP+     VL  A GSA +  G+TKV+AAVYGPK    ++   P+KAS+ V +        + K     + E E   +++  L+S  +L 
Subjt:  RDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKN-ENPEKASIEVIW--------KPKTGQIGKLERECEMILKRTLQSICILT

Query:  INPNTTTSIIVQLLPC-------AINASCAALVDAGIPLKHLAVAICCCLSESGYVILDPTKLEEQKMKAFVHLVFPNSPVSVIP
        + P T   I +++L         A+ A+  AL DAGIP++ L   +    ++ G ++LD  + E+   +A       + P++V+P
Subjt:  INPNTTTSIIVQLLPC-------AINASCAALVDAGIPLKHLAVAICCCLSESGYVILDPTKLEEQKMKAFVHLVFPNSPVSVIP

Q84T68 Exosome complex exonuclease RRP46 homolog1.2e-7864.71Show/hide
Query:  MEMDRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNT
        ME  R DGR  NQLRP +C+ N L+RAHGSA W+QGDT VLAAVYGPK GT+K ENPEKASIEV+WKP TGQIGK E+E EM LKRTLQSIC+LT++PNT
Subjt:  MEMDRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNT

Query:  TTSIIVQ-------LLPCAINASCAALVDAGIPLKHLAVAICCCLSESGYVILDPTKLEEQKMKAFVHLVFPNSPVSVIPKGSTQLVDEPLEHGIITSVT
        TTS+I+Q       LLPCAINA CAALV AGIPLKHLAVAI C + E G VILD  K EEQ++K+F HLVFPNS  S   K   Q  +E  E G+ITS+T
Subjt:  TTSIIVQ-------LLPCAINASCAALVDAGIPLKHLAVAICCCLSESGYVILDPTKLEEQKMKAFVHLVFPNSPVSVIPKGSTQLVDEPLEHGIITSVT

Query:  QGAMSVDDYIHCLERGRAATAKMSDFLRRSLQPQLPAD
         G MS +DY  C+ERG AA++++SDF+R +LQ Q P D
Subjt:  QGAMSVDDYIHCLERGRAATAKMSDFLRRSLQPQLPAD

Q9CRA8 Exosome complex component RRP463.4e-2834.25Show/hide
Query:  LRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNTTTSIIVQ------
        LR  AC  N+L+R  GSAS+ QGDT VLA VYGP       E   KA++EVI +PK G  G  E+  E +++ T +++ +  ++P T+ ++++Q      
Subjt:  LRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNTTTSIIVQ------

Query:  -LLPCAINASCAALVDAGIPLKHLAVAICCCLSESGYVILDPTKLEEQKMKAFVHLVFPNSPVSVIPKGSTQLVDEPLEHGIITSVTQGAMSVDDYIHCL
         LL C +NA+C ALVDAG+P++ L   + C L   G ++LDPT  +E++ +A +     ++                 E  ++ S T+G  S  +   CL
Subjt:  -LLPCAINASCAALVDAGIPLKHLAVAICCCLSESGYVILDPTKLEEQKMKAFVHLVFPNSPVSVIPKGSTQLVDEPLEHGIITSVTQGAMSVDDYIHCL

Query:  ERGRAATAKMSDFLRRSLQ
           +AA+  +  F R SLQ
Subjt:  ERGRAATAKMSDFLRRSLQ

Q9LX74 Exosome complex exonuclease RRP46 homolog2.3e-9672.02Show/hide
Query:  MEMDRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNT
        ME+DR+DGRT NQLRPLACS N+L+R HGSASWSQGDTKVLAAVYGPKAGTKKNEN EKA  EVIWKPK+GQIGK+E+E EMILKRT+QSIC+LT+NPNT
Subjt:  MEMDRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNT

Query:  TTSIIVQ-------LLPCAINASCAALVDAGIPLKHLAVAICCCLSESGYVILDPTKLEEQKMKAFVHLVFPNSPVSVIPKGSTQLVDEPLEHGIITSVT
        TTS+I+Q       LLPCAINA+CAALVDAGIP+KHLAVAICCCL+E+GY++LDP KLEE+KM AF +LVFPN+ +SV+P+GS+    EP+EHGIITS+T
Subjt:  TTSIIVQ-------LLPCAINASCAALVDAGIPLKHLAVAICCCLSESGYVILDPTKLEEQKMKAFVHLVFPNSPVSVIPKGSTQLVDEPLEHGIITSVT

Query:  QGAMSVDDYIHCLERGRAATAKMSDFLRRSLQPQLPADSSKAG
         G MSVDDY  C+E GRAATA +S F R++ Q      SSKAG
Subjt:  QGAMSVDDYIHCLERGRAATAKMSDFLRRSLQPQLPADSSKAG

Q9NQT4 Exosome complex component RRP465.3e-2934.7Show/hide
Query:  LRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNTTTSIIVQ------
        LR  AC  N+L+R  GSAS+ QGDT VLA VYGP       E   KA++EVI +PK G  G  E+  E +++ T +++ + T++P T+ ++++Q      
Subjt:  LRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNTTTSIIVQ------

Query:  -LLPCAINASCAALVDAGIPLKHLAVAICCCLSESGYVILDPTKLEEQKMKAFVHLVFPNSPVSVIPKGSTQLVDEPLEHGIITSVTQGAMSVDDYIHCL
         LL C +NA+C ALVDAG+P++ L   + C L   G ++LDPT  +E++ +A +                     + +E  ++ S T+G  S  +   CL
Subjt:  -LLPCAINASCAALVDAGIPLKHLAVAICCCLSESGYVILDPTKLEEQKMKAFVHLVFPNSPVSVIPKGSTQLVDEPLEHGIITSVTQGAMSVDDYIHCL

Query:  ERGRAATAKMSDFLRRSLQ
           +AA+  +  F R SLQ
Subjt:  ERGRAATAKMSDFLRRSLQ

Arabidopsis top hitse value%identityAlignment
AT3G46210.1 Ribosomal protein S5 domain 2-like superfamily protein1.6e-9772.02Show/hide
Query:  MEMDRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNT
        ME+DR+DGRT NQLRPLACS N+L+R HGSASWSQGDTKVLAAVYGPKAGTKKNEN EKA  EVIWKPK+GQIGK+E+E EMILKRT+QSIC+LT+NPNT
Subjt:  MEMDRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNT

Query:  TTSIIVQ-------LLPCAINASCAALVDAGIPLKHLAVAICCCLSESGYVILDPTKLEEQKMKAFVHLVFPNSPVSVIPKGSTQLVDEPLEHGIITSVT
        TTS+I+Q       LLPCAINA+CAALVDAGIP+KHLAVAICCCL+E+GY++LDP KLEE+KM AF +LVFPN+ +SV+P+GS+    EP+EHGIITS+T
Subjt:  TTSIIVQ-------LLPCAINASCAALVDAGIPLKHLAVAICCCLSESGYVILDPTKLEEQKMKAFVHLVFPNSPVSVIPKGSTQLVDEPLEHGIITSVT

Query:  QGAMSVDDYIHCLERGRAATAKMSDFLRRSLQPQLPADSSKAG
         G MSVDDY  C+E GRAATA +S F R++ Q      SSKAG
Subjt:  QGAMSVDDYIHCLERGRAATAKMSDFLRRSLQPQLPADSSKAG

AT3G46210.2 Ribosomal protein S5 domain 2-like superfamily protein1.6e-9772.02Show/hide
Query:  MEMDRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNT
        ME+DR+DGRT NQLRPLACS N+L+R HGSASWSQGDTKVLAAVYGPKAGTKKNEN EKA  EVIWKPK+GQIGK+E+E EMILKRT+QSIC+LT+NPNT
Subjt:  MEMDRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNT

Query:  TTSIIVQ-------LLPCAINASCAALVDAGIPLKHLAVAICCCLSESGYVILDPTKLEEQKMKAFVHLVFPNSPVSVIPKGSTQLVDEPLEHGIITSVT
        TTS+I+Q       LLPCAINA+CAALVDAGIP+KHLAVAICCCL+E+GY++LDP KLEE+KM AF +LVFPN+ +SV+P+GS+    EP+EHGIITS+T
Subjt:  TTSIIVQ-------LLPCAINASCAALVDAGIPLKHLAVAICCCLSESGYVILDPTKLEEQKMKAFVHLVFPNSPVSVIPKGSTQLVDEPLEHGIITSVT

Query:  QGAMSVDDYIHCLERGRAATAKMSDFLRRSLQPQLPADSSKAG
         G MSVDDY  C+E GRAATA +S F R++ Q      SSKAG
Subjt:  QGAMSVDDYIHCLERGRAATAKMSDFLRRSLQPQLPADSSKAG

AT3G46210.3 Ribosomal protein S5 domain 2-like superfamily protein1.6e-9772.02Show/hide
Query:  MEMDRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNT
        ME+DR+DGRT NQLRPLACS N+L+R HGSASWSQGDTKVLAAVYGPKAGTKKNEN EKA  EVIWKPK+GQIGK+E+E EMILKRT+QSIC+LT+NPNT
Subjt:  MEMDRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNT

Query:  TTSIIVQ-------LLPCAINASCAALVDAGIPLKHLAVAICCCLSESGYVILDPTKLEEQKMKAFVHLVFPNSPVSVIPKGSTQLVDEPLEHGIITSVT
        TTS+I+Q       LLPCAINA+CAALVDAGIP+KHLAVAICCCL+E+GY++LDP KLEE+KM AF +LVFPN+ +SV+P+GS+    EP+EHGIITS+T
Subjt:  TTSIIVQ-------LLPCAINASCAALVDAGIPLKHLAVAICCCLSESGYVILDPTKLEEQKMKAFVHLVFPNSPVSVIPKGSTQLVDEPLEHGIITSVT

Query:  QGAMSVDDYIHCLERGRAATAKMSDFLRRSLQPQLPADSSKAG
         G MSVDDY  C+E GRAATA +S F R++ Q      SSKAG
Subjt:  QGAMSVDDYIHCLERGRAATAKMSDFLRRSLQPQLPADSSKAG

AT3G46210.4 Ribosomal protein S5 domain 2-like superfamily protein1.6e-9772.02Show/hide
Query:  MEMDRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNT
        ME+DR+DGRT NQLRPLACS N+L+R HGSASWSQGDTKVLAAVYGPKAGTKKNEN EKA  EVIWKPK+GQIGK+E+E EMILKRT+QSIC+LT+NPNT
Subjt:  MEMDRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNT

Query:  TTSIIVQ-------LLPCAINASCAALVDAGIPLKHLAVAICCCLSESGYVILDPTKLEEQKMKAFVHLVFPNSPVSVIPKGSTQLVDEPLEHGIITSVT
        TTS+I+Q       LLPCAINA+CAALVDAGIP+KHLAVAICCCL+E+GY++LDP KLEE+KM AF +LVFPN+ +SV+P+GS+    EP+EHGIITS+T
Subjt:  TTSIIVQ-------LLPCAINASCAALVDAGIPLKHLAVAICCCLSESGYVILDPTKLEEQKMKAFVHLVFPNSPVSVIPKGSTQLVDEPLEHGIITSVT

Query:  QGAMSVDDYIHCLERGRAATAKMSDFLRRSLQPQLPADSSKAG
         G MSVDDY  C+E GRAATA +S F R++ Q      SSKAG
Subjt:  QGAMSVDDYIHCLERGRAATAKMSDFLRRSLQPQLPADSSKAG

AT3G46210.5 Ribosomal protein S5 domain 2-like superfamily protein1.6e-9772.02Show/hide
Query:  MEMDRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNT
        ME+DR+DGRT NQLRPLACS N+L+R HGSASWSQGDTKVLAAVYGPKAGTKKNEN EKA  EVIWKPK+GQIGK+E+E EMILKRT+QSIC+LT+NPNT
Subjt:  MEMDRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNT

Query:  TTSIIVQ-------LLPCAINASCAALVDAGIPLKHLAVAICCCLSESGYVILDPTKLEEQKMKAFVHLVFPNSPVSVIPKGSTQLVDEPLEHGIITSVT
        TTS+I+Q       LLPCAINA+CAALVDAGIP+KHLAVAICCCL+E+GY++LDP KLEE+KM AF +LVFPN+ +SV+P+GS+    EP+EHGIITS+T
Subjt:  TTSIIVQ-------LLPCAINASCAALVDAGIPLKHLAVAICCCLSESGYVILDPTKLEEQKMKAFVHLVFPNSPVSVIPKGSTQLVDEPLEHGIITSVT

Query:  QGAMSVDDYIHCLERGRAATAKMSDFLRRSLQPQLPADSSKAG
         G MSVDDY  C+E GRAATA +S F R++ Q      SSKAG
Subjt:  QGAMSVDDYIHCLERGRAATAKMSDFLRRSLQPQLPADSSKAG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAATGGACAGAGATGATGGTCGTACCGCCAATCAGCTGAGACCGCTTGCTTGTTCTTGCAACGTTCTTAATCGTGCTCATGGCTCCGCCAGTTGGTCCCAAGGCGA
TACCAAAGTTCTTGCCGCAGTTTATGGACCTAAAGCAGGAACAAAGAAGAATGAGAATCCGGAGAAGGCTTCAATTGAGGTTATATGGAAACCCAAGACAGGACAGATTG
GAAAGCTGGAAAGGGAGTGTGAGATGATTTTAAAGAGGACATTGCAGAGTATTTGCATTTTAACTATTAATCCCAATACCACAACATCTATTATTGTTCAGCTTCTTCCT
TGTGCAATTAATGCATCATGTGCTGCCCTAGTAGATGCTGGAATTCCTTTAAAGCATCTTGCTGTTGCAATTTGCTGTTGTTTGTCTGAGAGTGGATATGTTATTTTGGA
TCCAACAAAACTAGAGGAGCAGAAAATGAAGGCATTTGTGCATTTGGTCTTTCCAAATTCACCTGTCTCAGTAATTCCCAAAGGATCTACACAACTTGTAGATGAACCAT
TAGAGCATGGAATAATAACATCTGTAACTCAGGGTGCAATGTCAGTGGACGATTATATTCACTGCCTGGAACGGGGGCGTGCTGCAACTGCAAAGATGTCTGATTTTTTG
AGGAGAAGCTTACAGCCTCAACTCCCAGCTGACTCCTCAAAAGCTGGC
mRNA sequenceShow/hide mRNA sequence
ATGGAAATGGACAGAGATGATGGTCGTACCGCCAATCAGCTGAGACCGCTTGCTTGTTCTTGCAACGTTCTTAATCGTGCTCATGGCTCCGCCAGTTGGTCCCAAGGCGA
TACCAAAGTTCTTGCCGCAGTTTATGGACCTAAAGCAGGAACAAAGAAGAATGAGAATCCGGAGAAGGCTTCAATTGAGGTTATATGGAAACCCAAGACAGGACAGATTG
GAAAGCTGGAAAGGGAGTGTGAGATGATTTTAAAGAGGACATTGCAGAGTATTTGCATTTTAACTATTAATCCCAATACCACAACATCTATTATTGTTCAGCTTCTTCCT
TGTGCAATTAATGCATCATGTGCTGCCCTAGTAGATGCTGGAATTCCTTTAAAGCATCTTGCTGTTGCAATTTGCTGTTGTTTGTCTGAGAGTGGATATGTTATTTTGGA
TCCAACAAAACTAGAGGAGCAGAAAATGAAGGCATTTGTGCATTTGGTCTTTCCAAATTCACCTGTCTCAGTAATTCCCAAAGGATCTACACAACTTGTAGATGAACCAT
TAGAGCATGGAATAATAACATCTGTAACTCAGGGTGCAATGTCAGTGGACGATTATATTCACTGCCTGGAACGGGGGCGTGCTGCAACTGCAAAGATGTCTGATTTTTTG
AGGAGAAGCTTACAGCCTCAACTCCCAGCTGACTCCTCAAAAGCTGGC
Protein sequenceShow/hide protein sequence
MEMDRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNTTTSIIVQLLP
CAINASCAALVDAGIPLKHLAVAICCCLSESGYVILDPTKLEEQKMKAFVHLVFPNSPVSVIPKGSTQLVDEPLEHGIITSVTQGAMSVDDYIHCLERGRAATAKMSDFL
RRSLQPQLPADSSKAG