; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS001250 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS001250
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionAminoacyl-tRNA hydrolase
Genome locationscaffold36:2662705..2663985
RNA-Seq ExpressionMS001250
SyntenyMS001250
Gene Ontology termsGO:0004045 - aminoacyl-tRNA hydrolase activity (molecular function)
InterPro domainsIPR002833 - Peptidyl-tRNA hydrolase, PTH2
IPR023476 - Peptidyl-tRNA hydrolase II domain superfamily
IPR042237 - Putative peptidyl-tRNA hydrolase PTRHD1


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022132277.1 uncharacterized protein LOC111005172 [Momordica charantia]1.4e-10199.48Show/hide
Query:  MTSVVSAFSFSIPNFCRLCSRIRASPSSSLPLRYRNGNSRLFSSVSMSESVESNSVPPTDDGGAKAEERAKEETADVLVQYVVLRRDLIDSWPLGSVVTQ
        MTSVVSAFSFSIPNFCRLCSRIRASPSSSLPLRYRNGNSRLFSSVSMSESVESNSVPPTDDGGAKAEERAKEETADVLVQYVVLRRDLIDSWPLGSVVTQ
Subjt:  MTSVVSAFSFSIPNFCRLCSRIRASPSSSLPLRYRNGNSRLFSSVSMSESVESNSVPPTDDGGAKAEERAKEETADVLVQYVVLRRDLIDSWPLGSVVTQ

Query:  GCHASVSAIWLNKDDSHTSEYCSPGNIDSMHKVTVEVKGETQIVNLSEKLKANSIAHKLWIEQPENIPTCLATKPYPKSLVSAFFKKLKLCK
        GCHASVSAIWLNKDDSHTSEYCSPGNIDSMHK+TVEVKGETQIVNLSEKLKANSIAHKLWIEQPENIPTCLATKPYPKSLVSAFFKKLKLCK
Subjt:  GCHASVSAIWLNKDDSHTSEYCSPGNIDSMHKVTVEVKGETQIVNLSEKLKANSIAHKLWIEQPENIPTCLATKPYPKSLVSAFFKKLKLCK

XP_022962062.1 putative peptidyl-tRNA hydrolase PTRHD1 [Cucurbita moschata]7.2e-7478.57Show/hide
Query:  MTSVVSA--FSFSIPNFCRL--CSRIRASPSSSLPLRYRNGNSRLFSSVSMSESVESNSVPPTDDGGAKAEERAKEETADVLVQYVVLRRDLIDSWPLGS
        M SV+SA  F+FSI    +L  CSR R  PSSSL LR RN NS LFSS SMSES ESNS PP DD        + E+TADVL+QYVVLRRDLIDSWPLGS
Subjt:  MTSVVSA--FSFSIPNFCRL--CSRIRASPSSSLPLRYRNGNSRLFSSVSMSESVESNSVPPTDDGGAKAEERAKEETADVLVQYVVLRRDLIDSWPLGS

Query:  VVTQGCHASVSAIWLNKDDSHTSEYCSPGNIDSMHKVTVEVKGETQIVNLSEKLKANSIAHKLWIEQPENIPTCLATKPYPKSLVSAFFKKLKLCK
        VVTQGCHASVSA+WLNKDD HT EYCSP NIDSMHKVT+EVKGETQIVNLSEKL+ANSIAHKLWIEQPENIPTCLATKPYPKS+VSAFFKKLKLCK
Subjt:  VVTQGCHASVSAIWLNKDDSHTSEYCSPGNIDSMHKVTVEVKGETQIVNLSEKLKANSIAHKLWIEQPENIPTCLATKPYPKSLVSAFFKKLKLCK

XP_023002512.1 putative peptidyl-tRNA hydrolase PTRHD1 isoform X1 [Cucurbita maxima]1.2e-7379.38Show/hide
Query:  MTSVVSA--FSFSIPNFCRLCSRIRASPSSSLPLRYRNGNSRLFSSVSMSESVESNSVPPTDDGGAKAEERAKEETADVLVQYVVLRRDLIDSWPLGSVV
        M SV+SA  F+FSI N  RLCS  R    SS+ L   N NS  FSS SMSES ESNSV P DDGGAKA     EE ADVLVQYVVLRRDLIDSWPLGSVV
Subjt:  MTSVVSA--FSFSIPNFCRLCSRIRASPSSSLPLRYRNGNSRLFSSVSMSESVESNSVPPTDDGGAKAEERAKEETADVLVQYVVLRRDLIDSWPLGSVV

Query:  TQGCHASVSAIWLNKDDSHTSEYCSPGNIDSMHKVTVEVKGETQIVNLSEKLKANSIAHKLWIEQPENIPTCLATKPYPKSLVSAFFKKLKLCK
        TQGCHASVSAIWLNKDD HTSEYCSP NIDSMHKVT+EVKGETQIVNLSEKLKANSI HKLW+EQPENIPTCLA+KPYPKS+VS FFKKLKLCK
Subjt:  TQGCHASVSAIWLNKDDSHTSEYCSPGNIDSMHKVTVEVKGETQIVNLSEKLKANSIAHKLWIEQPENIPTCLATKPYPKSLVSAFFKKLKLCK

XP_023546189.1 putative peptidyl-tRNA hydrolase PTRHD1 [Cucurbita pepo subsp. pepo]2.9e-7579.59Show/hide
Query:  MTSVVSA--FSFSIPNFCRL--CSRIRASPSSSLPLRYRNGNSRLFSSVSMSESVESNSVPPTDDGGAKAEERAKEETADVLVQYVVLRRDLIDSWPLGS
        M SV+SA  F+FSI    +L  CSR R  PSSSL LR RN NS LFSS SMSES ESNS PP DDG         E+TADVL+QYVVLRRDLIDSWPLGS
Subjt:  MTSVVSA--FSFSIPNFCRL--CSRIRASPSSSLPLRYRNGNSRLFSSVSMSESVESNSVPPTDDGGAKAEERAKEETADVLVQYVVLRRDLIDSWPLGS

Query:  VVTQGCHASVSAIWLNKDDSHTSEYCSPGNIDSMHKVTVEVKGETQIVNLSEKLKANSIAHKLWIEQPENIPTCLATKPYPKSLVSAFFKKLKLCK
        VVTQGCHASVSA+WLNKDD HTSEYCSP NIDSMHKVT+EVKGETQIVNLSEKLKA+SIAHKLWIEQPENIPTCLATKPYPKS+VSAFFKKLKLCK
Subjt:  VVTQGCHASVSAIWLNKDDSHTSEYCSPGNIDSMHKVTVEVKGETQIVNLSEKLKANSIAHKLWIEQPENIPTCLATKPYPKSLVSAFFKKLKLCK

XP_038884124.1 putative peptidyl-tRNA hydrolase PTRHD1 [Benincasa hispida]1.3e-7580.1Show/hide
Query:  MTSVVSA--FSFSIPNFCRL--CSRIRASPSSSLPLRYRNGNSRLFSSVSMSESVESNSVPPTDDGGAKAEERAKEETADVLVQYVVLRRDLIDSWPLGS
        MT V+SA  F+FSI    RL  CS  R SPSSSL LR  N NS  FSS SMS+S E+NSVPP DDGGAKA     EE ADVL+QYVVLRRDLIDSWPLGS
Subjt:  MTSVVSA--FSFSIPNFCRL--CSRIRASPSSSLPLRYRNGNSRLFSSVSMSESVESNSVPPTDDGGAKAEERAKEETADVLVQYVVLRRDLIDSWPLGS

Query:  VVTQGCHASVSAIWLNKDDSHTSEYCSPGNIDSMHKVTVEVKGETQIVNLSEKLKANSIAHKLWIEQPENIPTCLATKPYPKSLVSAFFKKLKLCK
        VVTQGCHASVSAIWLNKDD HTS+YCSP NIDSMHKVT+EVKGETQIVNLSEKLKANSI HKLWIEQPENIPTCLATKPYPKS+VS FFKKLKLCK
Subjt:  VVTQGCHASVSAIWLNKDDSHTSEYCSPGNIDSMHKVTVEVKGETQIVNLSEKLKANSIAHKLWIEQPENIPTCLATKPYPKSLVSAFFKKLKLCK

TrEMBL top hitse value%identityAlignment
A0A6J1BTE6 Aminoacyl-tRNA hydrolase6.8e-10299.48Show/hide
Query:  MTSVVSAFSFSIPNFCRLCSRIRASPSSSLPLRYRNGNSRLFSSVSMSESVESNSVPPTDDGGAKAEERAKEETADVLVQYVVLRRDLIDSWPLGSVVTQ
        MTSVVSAFSFSIPNFCRLCSRIRASPSSSLPLRYRNGNSRLFSSVSMSESVESNSVPPTDDGGAKAEERAKEETADVLVQYVVLRRDLIDSWPLGSVVTQ
Subjt:  MTSVVSAFSFSIPNFCRLCSRIRASPSSSLPLRYRNGNSRLFSSVSMSESVESNSVPPTDDGGAKAEERAKEETADVLVQYVVLRRDLIDSWPLGSVVTQ

Query:  GCHASVSAIWLNKDDSHTSEYCSPGNIDSMHKVTVEVKGETQIVNLSEKLKANSIAHKLWIEQPENIPTCLATKPYPKSLVSAFFKKLKLCK
        GCHASVSAIWLNKDDSHTSEYCSPGNIDSMHK+TVEVKGETQIVNLSEKLKANSIAHKLWIEQPENIPTCLATKPYPKSLVSAFFKKLKLCK
Subjt:  GCHASVSAIWLNKDDSHTSEYCSPGNIDSMHKVTVEVKGETQIVNLSEKLKANSIAHKLWIEQPENIPTCLATKPYPKSLVSAFFKKLKLCK

A0A6J1GJ11 Aminoacyl-tRNA hydrolase1.7e-7379.38Show/hide
Query:  MTSVVSA--FSFSIPNFCRLCSRIRASPSSSLPLRYRNGNSRLFSSVSMSESVESNSVPPTDDGGAKAEERAKEETADVLVQYVVLRRDLIDSWPLGSVV
        M SV+SA  F+FSI N  RLC   R    SS+ LR  N NS  FSS SMSES ESNSV P DDGGAKA     EE ADVLVQYVVLRRDLIDSWPLGSVV
Subjt:  MTSVVSA--FSFSIPNFCRLCSRIRASPSSSLPLRYRNGNSRLFSSVSMSESVESNSVPPTDDGGAKAEERAKEETADVLVQYVVLRRDLIDSWPLGSVV

Query:  TQGCHASVSAIWLNKDDSHTSEYCSPGNIDSMHKVTVEVKGETQIVNLSEKLKANSIAHKLWIEQPENIPTCLATKPYPKSLVSAFFKKLKLCK
        TQGCHASVSAIWLNKDD HTSEYCSP NIDSMHKVT+EVKGETQIVNLSEKLKANSI HKLW+EQPENIPTCLA+KPYPKS+VS FFKKLKLCK
Subjt:  TQGCHASVSAIWLNKDDSHTSEYCSPGNIDSMHKVTVEVKGETQIVNLSEKLKANSIAHKLWIEQPENIPTCLATKPYPKSLVSAFFKKLKLCK

A0A6J1HBR1 Aminoacyl-tRNA hydrolase3.5e-7478.57Show/hide
Query:  MTSVVSA--FSFSIPNFCRL--CSRIRASPSSSLPLRYRNGNSRLFSSVSMSESVESNSVPPTDDGGAKAEERAKEETADVLVQYVVLRRDLIDSWPLGS
        M SV+SA  F+FSI    +L  CSR R  PSSSL LR RN NS LFSS SMSES ESNS PP DD        + E+TADVL+QYVVLRRDLIDSWPLGS
Subjt:  MTSVVSA--FSFSIPNFCRL--CSRIRASPSSSLPLRYRNGNSRLFSSVSMSESVESNSVPPTDDGGAKAEERAKEETADVLVQYVVLRRDLIDSWPLGS

Query:  VVTQGCHASVSAIWLNKDDSHTSEYCSPGNIDSMHKVTVEVKGETQIVNLSEKLKANSIAHKLWIEQPENIPTCLATKPYPKSLVSAFFKKLKLCK
        VVTQGCHASVSA+WLNKDD HT EYCSP NIDSMHKVT+EVKGETQIVNLSEKL+ANSIAHKLWIEQPENIPTCLATKPYPKS+VSAFFKKLKLCK
Subjt:  VVTQGCHASVSAIWLNKDDSHTSEYCSPGNIDSMHKVTVEVKGETQIVNLSEKLKANSIAHKLWIEQPENIPTCLATKPYPKSLVSAFFKKLKLCK

A0A6J1K304 Aminoacyl-tRNA hydrolase2.3e-7378.57Show/hide
Query:  MTSVVSA--FSFSIPNFCRL--CSRIRASPSSSLPLRYRNGNSRLFSSVSMSESVESNSVPPTDDGGAKAEERAKEETADVLVQYVVLRRDLIDSWPLGS
        M SV+SA  F+FSI    +L  CSR R  PSSSL LR RN NS LFSS SMSES ESNS PP DD          E+ ADVL+QYVVLRRDLIDSWPLGS
Subjt:  MTSVVSA--FSFSIPNFCRL--CSRIRASPSSSLPLRYRNGNSRLFSSVSMSESVESNSVPPTDDGGAKAEERAKEETADVLVQYVVLRRDLIDSWPLGS

Query:  VVTQGCHASVSAIWLNKDDSHTSEYCSPGNIDSMHKVTVEVKGETQIVNLSEKLKANSIAHKLWIEQPENIPTCLATKPYPKSLVSAFFKKLKLCK
        VVTQGCHASVSAIWLNKDD  TSEYCSP NIDSMHKVT+EVKGETQIVNLSEKLK NSIAHKLWIEQPENIPTCLATKPYPKS+VSAFFKKLKLCK
Subjt:  VVTQGCHASVSAIWLNKDDSHTSEYCSPGNIDSMHKVTVEVKGETQIVNLSEKLKANSIAHKLWIEQPENIPTCLATKPYPKSLVSAFFKKLKLCK

A0A6J1KJQ6 Aminoacyl-tRNA hydrolase6.0e-7479.38Show/hide
Query:  MTSVVSA--FSFSIPNFCRLCSRIRASPSSSLPLRYRNGNSRLFSSVSMSESVESNSVPPTDDGGAKAEERAKEETADVLVQYVVLRRDLIDSWPLGSVV
        M SV+SA  F+FSI N  RLCS  R    SS+ L   N NS  FSS SMSES ESNSV P DDGGAKA     EE ADVLVQYVVLRRDLIDSWPLGSVV
Subjt:  MTSVVSA--FSFSIPNFCRLCSRIRASPSSSLPLRYRNGNSRLFSSVSMSESVESNSVPPTDDGGAKAEERAKEETADVLVQYVVLRRDLIDSWPLGSVV

Query:  TQGCHASVSAIWLNKDDSHTSEYCSPGNIDSMHKVTVEVKGETQIVNLSEKLKANSIAHKLWIEQPENIPTCLATKPYPKSLVSAFFKKLKLCK
        TQGCHASVSAIWLNKDD HTSEYCSP NIDSMHKVT+EVKGETQIVNLSEKLKANSI HKLW+EQPENIPTCLA+KPYPKS+VS FFKKLKLCK
Subjt:  TQGCHASVSAIWLNKDDSHTSEYCSPGNIDSMHKVTVEVKGETQIVNLSEKLKANSIAHKLWIEQPENIPTCLATKPYPKSLVSAFFKKLKLCK

SwissProt top hitse value%identityAlignment
D3Z4S3 Putative peptidyl-tRNA hydrolase PTRHD11.4e-2447.06Show/hide
Query:  VLVQYVVLRRDLID---SWPLGSVVTQGCHASVSAIWLNKDDSHTSEYCSPGNIDSMHKVTVEVKGETQIVNLSEKLKANSIAHKLWIEQPENIPTCLAT
        +LVQY+VLR+DL     SWP G++V Q CHA+ +A+ L++D  HT+ Y     +  M KV +E   ET +  L+E L+  +I H LW+EQPENI TC+A 
Subjt:  VLVQYVVLRRDLID---SWPLGSVVTQGCHASVSAIWLNKDDSHTSEYCSPGNIDSMHKVTVEVKGETQIVNLSEKLKANSIAHKLWIEQPENIPTCLAT

Query:  KPYPKSLVSAFFKKLKLCK
        +PYPK  VS + KK +L K
Subjt:  KPYPKSLVSAFFKKLKLCK

Q3SZ85 Putative peptidyl-tRNA hydrolase PTRHD11.5e-2649.58Show/hide
Query:  VLVQYVVLRRDLID---SWPLGSVVTQGCHASVSAIWLNKDDSHTSEYCSPGNIDSMHKVTVEVKGETQIVNLSEKLKANSIAHKLWIEQPENIPTCLAT
        +LVQY+VLR+DL     SWP G+VV Q CHA+ +A+ L++D  HT+ Y     ++ M KV +E   ET +  L+E L+  +I HKLW+EQPENIPTC+A 
Subjt:  VLVQYVVLRRDLID---SWPLGSVVTQGCHASVSAIWLNKDDSHTSEYCSPGNIDSMHKVTVEVKGETQIVNLSEKLKANSIAHKLWIEQPENIPTCLAT

Query:  KPYPKSLVSAFFKKLKLCK
        +PYPK  VS + KK +L K
Subjt:  KPYPKSLVSAFFKKLKLCK

Q6GMV3 Putative peptidyl-tRNA hydrolase PTRHD19.3e-2446.22Show/hide
Query:  VLVQYVVLRRDLID---SWPLGSVVTQGCHASVSAIWLNKDDSHTSEYCSPGNIDSMHKVTVEVKGETQIVNLSEKLKANSIAHKLWIEQPENIPTCLAT
        VLVQY+VLR+DL     SWP G++V Q CHA+ +A+  ++D  HT+ Y     +  M KV +E   ET +  L+E L+  +I H LW+EQPENI TC+A 
Subjt:  VLVQYVVLRRDLID---SWPLGSVVTQGCHASVSAIWLNKDDSHTSEYCSPGNIDSMHKVTVEVKGETQIVNLSEKLKANSIAHKLWIEQPENIPTCLAT

Query:  KPYPKSLVSAFFKKLKLCK
        +PYPK  V  + KK +L K
Subjt:  KPYPKSLVSAFFKKLKLCK

Arabidopsis top hitse value%identityAlignment
AT5G10700.1 Peptidyl-tRNA hydrolase II (PTH2) family protein4.9e-5257.65Show/hide
Query:  MTSVVSAFSFSIPNFCRLCS----RIRASPSSSLPLRYRNGNSRLFSSVSMSESVESNSVPPTDDGGAKAEERAKEETADVLVQYVVLRRDLIDSWPLGS
        M + V + +F  P   R  S    RIR   S+      R  + R F++ S S S ++  +       A  +  + E+  DV+VQYVVLRRDLIDSWPLGS
Subjt:  MTSVVSAFSFSIPNFCRLCS----RIRASPSSSLPLRYRNGNSRLFSSVSMSESVESNSVPPTDDGGAKAEERAKEETADVLVQYVVLRRDLIDSWPLGS

Query:  VVTQGCHASVSAIWLNKDDSHTSEYCSPGNIDSMHKVTVEVKGETQIVNLSEKLKANSIAHKLWIEQPENIPTCLATKPYPKSLVSAFFKKLKLCK
        VVTQGCHASV+AIW  KDD  T +YC P +IDSMHKVT+EVKGETQ++NLSEKLK   I+HKLW+EQPENIPTC+ATKPYPKS VS+FFKKLKLCK
Subjt:  VVTQGCHASVSAIWLNKDDSHTSEYCSPGNIDSMHKVTVEVKGETQIVNLSEKLKANSIAHKLWIEQPENIPTCLATKPYPKSLVSAFFKKLKLCK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACATCTGTAGTTTCAGCATTCTCATTCTCCATCCCCAATTTCTGCAGGCTCTGTTCAAGGATTAGGGCTTCGCCATCTTCTTCACTCCCTCTTCGCTATCGGAACGG
AAATTCCAGGTTATTTAGCTCGGTTTCGATGAGTGAATCCGTTGAAAGTAATTCCGTTCCTCCAACGGACGACGGCGGAGCGAAGGCGGAGGAACGAGCCAAGGAGGAGA
CCGCCGATGTTTTGGTTCAGTATGTGGTGCTCCGGAGAGATCTGATCGACTCGTGGCCGCTCGGAAGCGTCGTAACTCAAGGATGCCATGCTTCAGTCTCCGCCATTTGG
TTGAACAAGGACGATTCCCACACTTCTGAGTACTGTAGTCCTGGTAACATCGATTCTATGCACAAGGTTACTGTCGAGGTGAAAGGAGAAACCCAGATCGTTAACTTGTC
AGAGAAACTCAAAGCAAATTCAATCGCCCATAAACTGTGGATCGAACAACCCGAGAACATTCCAACATGCCTTGCCACAAAGCCCTACCCCAAATCTCTAGTATCAGCAT
TTTTTAAAAAGCTGAAACTCTGTAAG
mRNA sequenceShow/hide mRNA sequence
ATGACATCTGTAGTTTCAGCATTCTCATTCTCCATCCCCAATTTCTGCAGGCTCTGTTCAAGGATTAGGGCTTCGCCATCTTCTTCACTCCCTCTTCGCTATCGGAACGG
AAATTCCAGGTTATTTAGCTCGGTTTCGATGAGTGAATCCGTTGAAAGTAATTCCGTTCCTCCAACGGACGACGGCGGAGCGAAGGCGGAGGAACGAGCCAAGGAGGAGA
CCGCCGATGTTTTGGTTCAGTATGTGGTGCTCCGGAGAGATCTGATCGACTCGTGGCCGCTCGGAAGCGTCGTAACTCAAGGATGCCATGCTTCAGTCTCCGCCATTTGG
TTGAACAAGGACGATTCCCACACTTCTGAGTACTGTAGTCCTGGTAACATCGATTCTATGCACAAGGTTACTGTCGAGGTGAAAGGAGAAACCCAGATCGTTAACTTGTC
AGAGAAACTCAAAGCAAATTCAATCGCCCATAAACTGTGGATCGAACAACCCGAGAACATTCCAACATGCCTTGCCACAAAGCCCTACCCCAAATCTCTAGTATCAGCAT
TTTTTAAAAAGCTGAAACTCTGTAAG
Protein sequenceShow/hide protein sequence
MTSVVSAFSFSIPNFCRLCSRIRASPSSSLPLRYRNGNSRLFSSVSMSESVESNSVPPTDDGGAKAEERAKEETADVLVQYVVLRRDLIDSWPLGSVVTQGCHASVSAIW
LNKDDSHTSEYCSPGNIDSMHKVTVEVKGETQIVNLSEKLKANSIAHKLWIEQPENIPTCLATKPYPKSLVSAFFKKLKLCK