; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS001299 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS001299
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionzinc finger Ran-binding domain-containing protein 2-like
Genome locationscaffold36:3081937..3082511
RNA-Seq ExpressionMS001299
SyntenyMS001299
Gene Ontology termsGO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR001876 - Zinc finger, RanBP2-type
IPR036443 - Zinc finger, RanBP2-type superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6585459.1 Peptidyl-prolyl cis-trans isomerase CYP95, partial [Cucurbita argyrosperma subsp. sororia]2.5e-8089.1Show/hide
Query:  KMSRPGDWNCRSCNHLNFQRRDSCHRCGEPRADFGGGGYGGAARVGSSSFGFTTGPDVRPGDWYCAIGNCGAHNFASRSICFKCGACKDDASAGAYDGDI
        +MSRPGDWNCRSCNHLNFQRRDSCHRCG+PRADFGG GYGG  R GSSSFGFTTGPDVRPGDWYCA+ NCGAHNFASRSICFKCGA KD+ASA AYDGD+
Subjt:  KMSRPGDWNCRSCNHLNFQRRDSCHRCGEPRADFGGGGYGGAARVGSSSFGFTTGPDVRPGDWYCAIGNCGAHNFASRSICFKCGACKDDASAGAYDGDI

Query:  PRMRGFNFGGASNRPGWKSGDWICARSDCNEHNFASRRECFRCNAPRDSNGNSPHS
         R+RGFNFGGASNRPGWKSGDWICARSDCNEHNFASRRECFRCNAPRDSN  SP+S
Subjt:  PRMRGFNFGGASNRPGWKSGDWICARSDCNEHNFASRRECFRCNAPRDSNGNSPHS

KAG7020377.1 SPAC17H9.04c [Cucurbita argyrosperma subsp. argyrosperma]2.1e-7988.39Show/hide
Query:  MSRPGDWNCRSCNHLNFQRRDSCHRCGEPRADFGGGGYGGAARVGSSSFGFTTGPDVRPGDWYCAIGNCGAHNFASRSICFKCGACKDDASAGAYDGDIP
        MSRPGDWNCRSCNHLNFQRRDSCHRCG+PRADFGG GYGG  R GSS+FGFTTGPDVRPGDWYCA+ NCGAHNFASRSICFKCGA KD+ASA AYDGD+ 
Subjt:  MSRPGDWNCRSCNHLNFQRRDSCHRCGEPRADFGGGGYGGAARVGSSSFGFTTGPDVRPGDWYCAIGNCGAHNFASRSICFKCGACKDDASAGAYDGDIP

Query:  RMRGFNFGGASNRPGWKSGDWICARSDCNEHNFASRRECFRCNAPRDSNGNSPHS
        R+RGFNFGGASNRPGWKSGDWICARSDCNEHNFASRRECF+CNAPRDSN  SP+S
Subjt:  RMRGFNFGGASNRPGWKSGDWICARSDCNEHNFASRRECFRCNAPRDSNGNSPHS

XP_004138734.1 uncharacterized RNA-binding protein C17H9.04c [Cucumis sativus]5.5e-8088.39Show/hide
Query:  MSRPGDWNCRSCNHLNFQRRDSCHRCGEPRADFGGGGYGGAARVGSSSFGFTTGPDVRPGDWYCAIGNCGAHNFASRSICFKCGACKDDASAGAYDGDIP
        MSRPGDWNCRSCNHLNFQRRDSC RCG+PRADFGGG YGG    GSSSFGFTTGPDVRPGDWYC + NCGAHNFASRSICFKCGA KD+ SA AYDGD+P
Subjt:  MSRPGDWNCRSCNHLNFQRRDSCHRCGEPRADFGGGGYGGAARVGSSSFGFTTGPDVRPGDWYCAIGNCGAHNFASRSICFKCGACKDDASAGAYDGDIP

Query:  RMRGFNFGGASNRPGWKSGDWICARSDCNEHNFASRRECFRCNAPRDSNGNSPHS
        RMRGFNFGGASNRPGWKSGDWICARSDCNEHNFASRRECFRCNAPRDSN  SP+S
Subjt:  RMRGFNFGGASNRPGWKSGDWICARSDCNEHNFASRRECFRCNAPRDSNGNSPHS

XP_022131903.1 uncharacterized RNA-binding protein C17H9.04c-like [Momordica charantia]2.0e-9099.35Show/hide
Query:  MSRPGDWNCRSCNHLNFQRRDSCHRCGEPRADFGGGGYGGAARVGSSSFGFTTGPDVRPGDWYCAIGNCGAHNFASRSICFKCGACKDDASAGAYDGDIP
        MSRPGDWNCRSCNHLNFQRRDSCHRCGEPRADFGGGGYGGAARVGSSSFGFTTGPDVRPGDWYCAIGNCGAHNFASRSICFKCGACKDDASAGAYDGDIP
Subjt:  MSRPGDWNCRSCNHLNFQRRDSCHRCGEPRADFGGGGYGGAARVGSSSFGFTTGPDVRPGDWYCAIGNCGAHNFASRSICFKCGACKDDASAGAYDGDIP

Query:  RMRGFNFGGASNRPGWKSGDWICARSDCNEHNFASRRECFRCNAPRDSNGNSPHS
        RMRGFNFGGASNRPGWKSGDWICARSDCNEHNFASRRECFRCNAPRDSNGNSP+S
Subjt:  RMRGFNFGGASNRPGWKSGDWICARSDCNEHNFASRRECFRCNAPRDSNGNSPHS

XP_023002539.1 uncharacterized RNA-binding protein C17H9.04c-like [Cucurbita maxima]8.5e-8190.32Show/hide
Query:  MSRPGDWNCRSCNHLNFQRRDSCHRCGEPRADFGGGGYGGAARVGSSSFGFTTGPDVRPGDWYCAIGNCGAHNFASRSICFKCGACKDDASAGAYDGDIP
        MSRPGDWNCRSCNHLNFQRRDSCHRCG+PRADFGGGGYGG  R GSSSFGFTTGPDVRPGDWYCA+ NCGAHNFASRSICFKCGA KD+ASA AYDGD+ 
Subjt:  MSRPGDWNCRSCNHLNFQRRDSCHRCGEPRADFGGGGYGGAARVGSSSFGFTTGPDVRPGDWYCAIGNCGAHNFASRSICFKCGACKDDASAGAYDGDIP

Query:  RMRGFNFGGASNRPGWKSGDWICARSDCNEHNFASRRECFRCNAPRDSNGNSPHS
        R+RGFNFGGASNRPGWKSGDWICARSDCNEHNFASRRECFRCNAPRDSN  SP+S
Subjt:  RMRGFNFGGASNRPGWKSGDWICARSDCNEHNFASRRECFRCNAPRDSNGNSPHS

TrEMBL top hitse value%identityAlignment
A0A0A0LLW7 Uncharacterized protein1.6e-8087.82Show/hide
Query:  KMSRPGDWNCRSCNHLNFQRRDSCHRCGEPRADFGGGGYGGAARVGSSSFGFTTGPDVRPGDWYCAIGNCGAHNFASRSICFKCGACKDDASAGAYDGDI
        +MSRPGDWNCRSCNHLNFQRRDSC RCG+PRADFGGG YGG    GSSSFGFTTGPDVRPGDWYC + NCGAHNFASRSICFKCGA KD+ SA AYDGD+
Subjt:  KMSRPGDWNCRSCNHLNFQRRDSCHRCGEPRADFGGGGYGGAARVGSSSFGFTTGPDVRPGDWYCAIGNCGAHNFASRSICFKCGACKDDASAGAYDGDI

Query:  PRMRGFNFGGASNRPGWKSGDWICARSDCNEHNFASRRECFRCNAPRDSNGNSPHS
        PRMRGFNFGGASNRPGWKSGDWICARSDCNEHNFASRRECFRCNAPRDSN  SP+S
Subjt:  PRMRGFNFGGASNRPGWKSGDWICARSDCNEHNFASRRECFRCNAPRDSNGNSPHS

A0A1S3BBL4 uncharacterized RNA-binding protein C17H9.04c2.7e-8088.39Show/hide
Query:  MSRPGDWNCRSCNHLNFQRRDSCHRCGEPRADFGGGGYGGAARVGSSSFGFTTGPDVRPGDWYCAIGNCGAHNFASRSICFKCGACKDDASAGAYDGDIP
        MSRPGDWNCRSCNHLNFQRRDSC RCG+PRADFGGG YGG    GSSSFGFTTGPDVRPGDWYC + NCGAHNFASRSICFKCGA KD+ SA AYDGD+P
Subjt:  MSRPGDWNCRSCNHLNFQRRDSCHRCGEPRADFGGGGYGGAARVGSSSFGFTTGPDVRPGDWYCAIGNCGAHNFASRSICFKCGACKDDASAGAYDGDIP

Query:  RMRGFNFGGASNRPGWKSGDWICARSDCNEHNFASRRECFRCNAPRDSNGNSPHS
        RMRGFNFGGASNRPGWKSGDWICARSDCNEHNFASRRECFRCNAPRDSN  SP+S
Subjt:  RMRGFNFGGASNRPGWKSGDWICARSDCNEHNFASRRECFRCNAPRDSNGNSPHS

A0A6J1BUS6 uncharacterized RNA-binding protein C17H9.04c-like9.7e-9199.35Show/hide
Query:  MSRPGDWNCRSCNHLNFQRRDSCHRCGEPRADFGGGGYGGAARVGSSSFGFTTGPDVRPGDWYCAIGNCGAHNFASRSICFKCGACKDDASAGAYDGDIP
        MSRPGDWNCRSCNHLNFQRRDSCHRCGEPRADFGGGGYGGAARVGSSSFGFTTGPDVRPGDWYCAIGNCGAHNFASRSICFKCGACKDDASAGAYDGDIP
Subjt:  MSRPGDWNCRSCNHLNFQRRDSCHRCGEPRADFGGGGYGGAARVGSSSFGFTTGPDVRPGDWYCAIGNCGAHNFASRSICFKCGACKDDASAGAYDGDIP

Query:  RMRGFNFGGASNRPGWKSGDWICARSDCNEHNFASRRECFRCNAPRDSNGNSPHS
        RMRGFNFGGASNRPGWKSGDWICARSDCNEHNFASRRECFRCNAPRDSNGNSP+S
Subjt:  RMRGFNFGGASNRPGWKSGDWICARSDCNEHNFASRRECFRCNAPRDSNGNSPHS

A0A6J1GJE4 TATA-binding protein-associated factor 2N-like1.7e-7989.03Show/hide
Query:  MSRPGDWNCRSCNHLNFQRRDSCHRCGEPRADFGGGGYGGAARVGSSSFGFTTGPDVRPGDWYCAIGNCGAHNFASRSICFKCGACKDDASAGAYDGDIP
        MSRPGDWNCRSCNHLNFQRRDSCHRCG+PRADFGG GYGG  R GSSSFGFTTGPDVRPGDWYCA+ NCGAHNFASRSICFKCGA KD+ASA AYDGD+ 
Subjt:  MSRPGDWNCRSCNHLNFQRRDSCHRCGEPRADFGGGGYGGAARVGSSSFGFTTGPDVRPGDWYCAIGNCGAHNFASRSICFKCGACKDDASAGAYDGDIP

Query:  RMRGFNFGGASNRPGWKSGDWICARSDCNEHNFASRRECFRCNAPRDSNGNSPHS
        R+RGFNFGGASN PGWKSGDWICARSDCNEHNFASRRECFRCNAPRDSN  SP+S
Subjt:  RMRGFNFGGASNRPGWKSGDWICARSDCNEHNFASRRECFRCNAPRDSNGNSPHS

A0A6J1KQR0 uncharacterized RNA-binding protein C17H9.04c-like4.1e-8190.32Show/hide
Query:  MSRPGDWNCRSCNHLNFQRRDSCHRCGEPRADFGGGGYGGAARVGSSSFGFTTGPDVRPGDWYCAIGNCGAHNFASRSICFKCGACKDDASAGAYDGDIP
        MSRPGDWNCRSCNHLNFQRRDSCHRCG+PRADFGGGGYGG  R GSSSFGFTTGPDVRPGDWYCA+ NCGAHNFASRSICFKCGA KD+ASA AYDGD+ 
Subjt:  MSRPGDWNCRSCNHLNFQRRDSCHRCGEPRADFGGGGYGGAARVGSSSFGFTTGPDVRPGDWYCAIGNCGAHNFASRSICFKCGACKDDASAGAYDGDIP

Query:  RMRGFNFGGASNRPGWKSGDWICARSDCNEHNFASRRECFRCNAPRDSNGNSPHS
        R+RGFNFGGASNRPGWKSGDWICARSDCNEHNFASRRECFRCNAPRDSN  SP+S
Subjt:  RMRGFNFGGASNRPGWKSGDWICARSDCNEHNFASRRECFRCNAPRDSNGNSPHS

SwissProt top hitse value%identityAlignment
O13801 Uncharacterized RNA-binding protein C17H9.04c6.6e-1227.73Show/hide
Query:  RPGDWNCRSCNHLNFQRRDSCHRCGEPRA--------------------DFGGG------GYGGAARVGS---------------------SSFGFTTGP
        RPGDWNC  C   NFQRR SC RC  P                       +G G       YGG+    +                     SS  F    
Subjt:  RPGDWNCRSCNHLNFQRRDSCHRCGEPRA--------------------DFGGG------GYGGAARVGS---------------------SSFGFTTGP

Query:  DVRPGDWYCAIGNCGAHNFASRSICFKCGACK-------DDASA---GAYD----------------------------GDIPRMRGFNFGGAS------
          R GDW C    CG HNFA    C +CGA +       D AS    G+Y                               +    G NFGG +      
Subjt:  DVRPGDWYCAIGNCGAHNFASRSICFKCGACK-------DDASA---GAYD----------------------------GDIPRMRGFNFGGAS------

Query:  ----------NRPG--WKSGDWICARSDCNEHNFASRRECFRCNAPRDSNGNSPHS
                  +RP      GDW+C   +C   NF  R  C RCNAP  SN   P S
Subjt:  ----------NRPG--WKSGDWICARSDCNEHNFASRRECFRCNAPRDSNGNSPHS

P32770 Asparagine-rich protein3.0e-0466.67Show/hide
Query:  RPGDWNCRSCNHLNFQRRDSCHRCGEP
        RPGDWNC SC   NFQRR +C RC  P
Subjt:  RPGDWNCRSCNHLNFQRRDSCHRCGEP

Q27294 RNA-binding protein cabeza2.7e-0533.33Show/hide
Query:  RPGDWNCRSCNHLNFQRRDSCHRCGEPRAD-------FGGGGYGGAARVGSSSFGFTTGPDVRPGDWYCAIGNCGAHNFASRSICFKCGACKDDASAGAY
        R GDW C SCN+ NF  R+ C+RC  P+ D        GGGGYGG    G    G+  G D          G  G HN        + G  +     G  
Subjt:  RPGDWNCRSCNHLNFQRRDSCHRCGEPRAD-------FGGGGYGGAARVGSSSFGFTTGPDVRPGDWYCAIGNCGAHNFASRSICFKCGACKDDASAGAY

Query:  DGDIPRMRGFNFGGASNRPG
         G   R    N GG   R G
Subjt:  DGDIPRMRGFNFGGASNRPG

Q92804 TATA-binding protein-associated factor 2N7.9e-0536.36Show/hide
Query:  RPGDWNC--RSCNHLNFQRRDSCHRCGEPR--------ADFGGGGYGG----AARVGSSSFGFTTGPDVRPGDWYCAIGNCGAHNFASRSICFKCGACKD
        + GDW C   SC ++NF RR+SC++C EPR         DF G GYGG      R G        G D R G  Y    + G      RS     G    
Subjt:  RPGDWNC--RSCNHLNFQRRDSCHRCGEPR--------ADFGGGGYGG----AARVGSSSFGFTTGPDVRPGDWYCAIGNCGAHNFASRSICFKCGACKD

Query:  DASAGAYDGDIPRMRGFNFGGASNRPGWKSGD
        D S G Y GD    RG  +GG  +R G   GD
Subjt:  DASAGAYDGDIPRMRGFNFGGASNRPGWKSGD

Arabidopsis top hitse value%identityAlignment
AT1G70650.1 Ran BP2/NZF zinc finger-like superfamily protein9.5e-0630.86Show/hide
Query:  RPGDWNCRSCNHLNFQRRDSCHRCGEPRADFGGGGYGGAARVGSSSFGFTTGPDVRPGDWYCAIGNCGAHNFASRSICFKC
        + GDW C++CN LNF +   C RC +                        T   + PG+W C   +C   NF   SIC KC
Subjt:  RPGDWNCRSCNHLNFQRRDSCHRCGEPRADFGGGGYGGAARVGSSSFGFTTGPDVRPGDWYCAIGNCGAHNFASRSICFKC

AT2G17975.1 zinc finger (Ran-binding) family protein2.6e-1127.19Show/hide
Query:  MSRPGDWNCRSCNHLNFQRRDSCHRCGEPR--ADFGGGGYGGAARVGSSSFGFTTGPDV-----------------------RPGDWYCAIGNCGAHNFA
        + R GDW C  C + N+  R+ C +CG+ +  A        GA+ + +    FT GP+                        R GDW C    CG HN++
Subjt:  MSRPGDWNCRSCNHLNFQRRDSCHRCGEPR--ADFGGGGYGGAARVGSSSFGFTTGPDV-----------------------RPGDWYCAIGNCGAHNFA

Query:  SRSICFKC--------GACKDDASAGAYDGDIPRMR-----------------GFNFGGASN------------RPG--------WKSGDWICARSDCNE
        SR  C KC        G  +  + A A++ D  R+                  G + G  SN             P         W+ GDW+C  ++C  
Subjt:  SRSICFKC--------GACKDDASAGAYDGDIPRMR-----------------GFNFGGASN------------RPG--------WKSGDWICARSDCNE

Query:  HNFASRRECFRCNAPRD
        HN+ASR EC RC   RD
Subjt:  HNFASRRECFRCNAPRD

AT2G26695.1 Ran BP2/NZF zinc finger-like superfamily protein1.1e-3043.15Show/hide
Query:  GDWNCRSCNHLNFQRRDSCHRCGEPRADFGGGGYGGAARVGSSSFGFTTGPDVRPGDWYCAIGNCGAHNFASRSICFKCGACKDDASAGAYDGDIPRMRG
        GDW C +C H NF++R+SC +CG P+  FGG        V  S++ +    +V  GDWYC   NCG+HN+ASR+ C++CG  K + +   Y     +M  
Subjt:  GDWNCRSCNHLNFQRRDSCHRCGEPRADFGGGGYGGAARVGSSSFGFTTGPDVRPGDWYCAIGNCGAHNFASRSICFKCGACKDDASAGAYDGDIPRMRG

Query:  FNFGGASNRPGWKSGDWICARSDCNEHNFASRRECFRCNAPRDSNG
        +   GA+  PGWK+GDW+C R  C  HN+ASR ECF+C   RD  G
Subjt:  FNFGGASNRPGWKSGDWICARSDCNEHNFASRRECFRCNAPRDSNG

AT3G15680.1 Ran BP2/NZF zinc finger-like superfamily protein1.9e-5463.8Show/hide
Query:  MSRPGDWNCRSCNHLNFQRRDSCHRCGEPRADFGG------GGYGGAARVGSSSFGFTTGPDVRPGDWYCAIGNCGAHNFASRSICFKCGACKDDASAGA
        MSRPGDWNCRSC+HLNFQRRDSC RCG+ R+  GG      G +GG A    S+FGFTTG DVRPGDWYC +GNCG HNFASRS CFKCG  KD+  AG 
Subjt:  MSRPGDWNCRSCNHLNFQRRDSCHRCGEPRADFGG------GGYGGAARVGSSSFGFTTGPDVRPGDWYCAIGNCGAHNFASRSICFKCGACKDDASAGA

Query:  ----------YDGDIPRMRGFNFGGASNRPGWKSGDWICARSDCNEHNFASRRECFRCNAPRD
                  +D DI R R    GG   R  WKSGDWIC R  CNEHNFASR ECFRCNAPRD
Subjt:  ----------YDGDIPRMRGFNFGGASNRPGWKSGDWICARSDCNEHNFASRRECFRCNAPRD

AT5G25490.1 Ran BP2/NZF zinc finger-like superfamily protein2.3e-5260.34Show/hide
Query:  MSRPGDWNCRSCNHLNFQRRDSCHRCGEPRADFGG------GGYGGAARVGSSSFGFTTGPDVRPGDWYCAIGNCGAHNFASRSICFKCGACKDD-----
        M+RPGDWNCR C+HLNFQRRDSC RC EPR   GG       G+GG  R  SSSFGF TGPDVRPGDWYC +G+CG HNFA+RS CFKCGA KD+     
Subjt:  MSRPGDWNCRSCNHLNFQRRDSCHRCGEPRADFGG------GGYGGAARVGSSSFGFTTGPDVRPGDWYCAIGNCGAHNFASRSICFKCGACKDD-----

Query:  --ASAGAYDGDIPRMRG-FNFGGASN------RPGWKSGDWICARSDCNEHNFASRRECFRCNAPRDSNGNSPH
          A+ G  D ++   RG F FGG+S+      R  WKSGDWIC RS CNEHNFASR ECFRCNAP++     P+
Subjt:  --ASAGAYDGDIPRMRG-FNFGGASN------RPGWKSGDWICARSDCNEHNFASRRECFRCNAPRDSNGNSPH


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
AAGATGAGCAGGCCAGGGGATTGGAATTGCAGGTCTTGCAACCACCTCAACTTTCAACGGAGGGACTCGTGCCATCGCTGCGGCGAGCCGAGGGCCGACTTCGGCGGCGG
AGGCTACGGCGGTGCCGCAAGAGTCGGCTCTTCGTCGTTCGGTTTCACCACCGGCCCCGACGTCCGTCCCGGGGATTGGTACTGCGCCATCGGAAACTGCGGCGCTCATA
ACTTCGCCAGCCGCTCCATCTGCTTCAAGTGCGGCGCGTGTAAGGACGACGCCTCCGCCGGTGCGTACGACGGAGATATTCCGCGAATGAGAGGCTTTAACTTCGGCGGT
GCCTCTAACCGCCCTGGATGGAAATCTGGCGATTGGATCTGTGCCAGATCGGATTGCAACGAGCATAACTTTGCCAGCCGAAGGGAATGCTTCAGATGCAATGCCCCGAG
GGATTCCAACGGCAACTCACCACACTCG
mRNA sequenceShow/hide mRNA sequence
AAGATGAGCAGGCCAGGGGATTGGAATTGCAGGTCTTGCAACCACCTCAACTTTCAACGGAGGGACTCGTGCCATCGCTGCGGCGAGCCGAGGGCCGACTTCGGCGGCGG
AGGCTACGGCGGTGCCGCAAGAGTCGGCTCTTCGTCGTTCGGTTTCACCACCGGCCCCGACGTCCGTCCCGGGGATTGGTACTGCGCCATCGGAAACTGCGGCGCTCATA
ACTTCGCCAGCCGCTCCATCTGCTTCAAGTGCGGCGCGTGTAAGGACGACGCCTCCGCCGGTGCGTACGACGGAGATATTCCGCGAATGAGAGGCTTTAACTTCGGCGGT
GCCTCTAACCGCCCTGGATGGAAATCTGGCGATTGGATCTGTGCCAGATCGGATTGCAACGAGCATAACTTTGCCAGCCGAAGGGAATGCTTCAGATGCAATGCCCCGAG
GGATTCCAACGGCAACTCACCACACTCG
Protein sequenceShow/hide protein sequence
KMSRPGDWNCRSCNHLNFQRRDSCHRCGEPRADFGGGGYGGAARVGSSSFGFTTGPDVRPGDWYCAIGNCGAHNFASRSICFKCGACKDDASAGAYDGDIPRMRGFNFGG
ASNRPGWKSGDWICARSDCNEHNFASRRECFRCNAPRDSNGNSPHS