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MS001300 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS001300
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionLINE-1 retrotransposable element ORF2 protein
Genome locationscaffold36:3127378..3127680
RNA-Seq ExpressionMS001300
SyntenyMS001300
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0039770.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]3.1e-0736.36Show/hide
Query:  SSRSPWFHIAKCTEGFYREISWKIENG------YDTLHNWTGLGPVYISLSASLCPLCRYLSVKDAWTNLDHGWNFSPRRSLLDREEILWDSISSNFPA
        SSRSPWF I K  E F R +SWKI+NG      +   H  + L   Y  L A      +  S++D W N    W+ +PRR L + E  LW  + ++  A
Subjt:  SSRSPWFHIAKCTEGFYREISWKIENG------YDTLHNWTGLGPVYISLSASLCPLCRYLSVKDAWTNLDHGWNFSPRRSLLDREEILWDSISSNFPA

KAA0039950.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]3.6e-0833.33Show/hide
Query:  SSRSPWFHIAKCTEGFYREISWKIENGYDT---LHNWTGLGPVYISLSASLC-PLCRYLSVKDAWTNLDHGWNFSPRRSLLDREEILWDSISSNFP
        S+ SPW  + +C   FY+ ISWK+ +G D    L NW G  P+ +++         +  SVK+ W    + W+    R L D EE LW +I ++ P
Subjt:  SSRSPWFHIAKCTEGFYREISWKIENGYDT---LHNWTGLGPVYISLSASLC-PLCRYLSVKDAWTNLDHGWNFSPRRSLLDREEILWDSISSNFP

KAA0041397.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]2.4e-0733.33Show/hide
Query:  SSRSPWFHIAKCTEGFYREISWKIENGYDT---LHNWTGLGPVYISLSASLC-PLCRYLSVKDAWTNLDHGWNFSPRRSLLDREEILWDSISSNFP
        S+ SPW  +  C   FY+ I WK+ +G D    L NW G  P+ + +         +  SVKD W      WN    R L D E+ LW +I ++ P
Subjt:  SSRSPWFHIAKCTEGFYREISWKIENGYDT---LHNWTGLGPVYISLSASLC-PLCRYLSVKDAWTNLDHGWNFSPRRSLLDREEILWDSISSNFP

KAA0044556.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]1.1e-0733.33Show/hide
Query:  SSRSPWFHIAKCTEGFYREISWKIENGYDT---LHNWTGLGPVYISLSASLC-PLCRYLSVKDAWTNLDHGWNFSPRRSLLDREEILWDSISSNFP
        S+ SPW  +  C   FY+ I WK+ +G D    L NW G  P+ +++         +  SVKD W      WN    R L D E+ LW +I ++ P
Subjt:  SSRSPWFHIAKCTEGFYREISWKIENGYDT---LHNWTGLGPVYISLSASLC-PLCRYLSVKDAWTNLDHGWNFSPRRSLLDREEILWDSISSNFP

XP_016902461.1 PREDICTED: LINE-1 retrotransposable element ORF2 protein [Cucumis melo]3.1e-0736.36Show/hide
Query:  SSRSPWFHIAKCTEGFYREISWKIENG------YDTLHNWTGLGPVYISLSASLCPLCRYLSVKDAWTNLDHGWNFSPRRSLLDREEILWDSISSNFPA
        SSRSPWF I K  E F R +SWKI+NG      +   H  + L   Y  L A      +  S++D W N    W+ +PRR L + E  LW  + ++  A
Subjt:  SSRSPWFHIAKCTEGFYREISWKIENG------YDTLHNWTGLGPVYISLSASLCPLCRYLSVKDAWTNLDHGWNFSPRRSLLDREEILWDSISSNFPA

TrEMBL top hitse value%identityAlignment
A0A1S4E2K5 LINE-1 retrotransposable element ORF2 protein1.5e-0736.36Show/hide
Query:  SSRSPWFHIAKCTEGFYREISWKIENG------YDTLHNWTGLGPVYISLSASLCPLCRYLSVKDAWTNLDHGWNFSPRRSLLDREEILWDSISSNFPA
        SSRSPWF I K  E F R +SWKI+NG      +   H  + L   Y  L A      +  S++D W N    W+ +PRR L + E  LW  + ++  A
Subjt:  SSRSPWFHIAKCTEGFYREISWKIENG------YDTLHNWTGLGPVYISLSASLCPLCRYLSVKDAWTNLDHGWNFSPRRSLLDREEILWDSISSNFPA

A0A5A7T9I7 LINE-1 retrotransposable element ORF2 protein1.8e-0833.33Show/hide
Query:  SSRSPWFHIAKCTEGFYREISWKIENGYDT---LHNWTGLGPVYISLSASLC-PLCRYLSVKDAWTNLDHGWNFSPRRSLLDREEILWDSISSNFP
        S+ SPW  + +C   FY+ ISWK+ +G D    L NW G  P+ +++         +  SVK+ W    + W+    R L D EE LW +I ++ P
Subjt:  SSRSPWFHIAKCTEGFYREISWKIENGYDT---LHNWTGLGPVYISLSASLC-PLCRYLSVKDAWTNLDHGWNFSPRRSLLDREEILWDSISSNFP

A0A5A7TIB8 LINE-1 retrotransposable element ORF2 protein1.1e-0733.33Show/hide
Query:  SSRSPWFHIAKCTEGFYREISWKIENGYDT---LHNWTGLGPVYISLSASLC-PLCRYLSVKDAWTNLDHGWNFSPRRSLLDREEILWDSISSNFP
        S+ SPW  +  C   FY+ I WK+ +G D    L NW G  P+ + +         +  SVKD W      WN    R L D E+ LW +I ++ P
Subjt:  SSRSPWFHIAKCTEGFYREISWKIENGYDT---LHNWTGLGPVYISLSASLC-PLCRYLSVKDAWTNLDHGWNFSPRRSLLDREEILWDSISSNFP

A0A5A7TR15 LINE-1 retrotransposable element ORF2 protein5.1e-0833.33Show/hide
Query:  SSRSPWFHIAKCTEGFYREISWKIENGYDT---LHNWTGLGPVYISLSASLC-PLCRYLSVKDAWTNLDHGWNFSPRRSLLDREEILWDSISSNFP
        S+ SPW  +  C   FY+ I WK+ +G D    L NW G  P+ +++         +  SVKD W      WN    R L D E+ LW +I ++ P
Subjt:  SSRSPWFHIAKCTEGFYREISWKIENGYDT---LHNWTGLGPVYISLSASLC-PLCRYLSVKDAWTNLDHGWNFSPRRSLLDREEILWDSISSNFP

A0A5D3DM72 LINE-1 retrotransposable element ORF2 protein1.5e-0736.36Show/hide
Query:  SSRSPWFHIAKCTEGFYREISWKIENG------YDTLHNWTGLGPVYISLSASLCPLCRYLSVKDAWTNLDHGWNFSPRRSLLDREEILWDSISSNFPA
        SSRSPWF I K  E F R +SWKI+NG      +   H  + L   Y  L A      +  S++D W N    W+ +PRR L + E  LW  + ++  A
Subjt:  SSRSPWFHIAKCTEGFYREISWKIENG------YDTLHNWTGLGPVYISLSASLCPLCRYLSVKDAWTNLDHGWNFSPRRSLLDREEILWDSISSNFPA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
AGCTCGAGGTCTCCCTGGTTTCATATAGCAAAGTGCACGGAAGGCTTCTATCGTGAGATAAGTTGGAAGATTGAGAATGGATATGACACTCTGCATAATTGGACAGGACT
GGGGCCTGTTTATATTTCTTTATCTGCATCTCTTTGCCCTCTCTGCAGGTATTTATCAGTAAAAGACGCCTGGACTAATTTGGATCATGGCTGGAATTTTTCTCCTCGCA
GATCCCTCCTCGACAGGGAGGAAATCTTATGGGATTCAATCTCTTCCAATTTTCCAGCTCTCCCCCAATCTTGCAGATCTTAT
mRNA sequenceShow/hide mRNA sequence
AGCTCGAGGTCTCCCTGGTTTCATATAGCAAAGTGCACGGAAGGCTTCTATCGTGAGATAAGTTGGAAGATTGAGAATGGATATGACACTCTGCATAATTGGACAGGACT
GGGGCCTGTTTATATTTCTTTATCTGCATCTCTTTGCCCTCTCTGCAGGTATTTATCAGTAAAAGACGCCTGGACTAATTTGGATCATGGCTGGAATTTTTCTCCTCGCA
GATCCCTCCTCGACAGGGAGGAAATCTTATGGGATTCAATCTCTTCCAATTTTCCAGCTCTCCCCCAATCTTGCAGATCTTAT
Protein sequenceShow/hide protein sequence
SSRSPWFHIAKCTEGFYREISWKIENGYDTLHNWTGLGPVYISLSASLCPLCRYLSVKDAWTNLDHGWNFSPRRSLLDREEILWDSISSNFPALPQSCRSY