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MS001301 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS001301
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Description3-isopropylmalate dehydratase
Genome locationscaffold36:3135685..3135765
RNA-Seq ExpressionMS001301
SyntenyMS001301
Gene Ontology termsNA
InterPro domainsIPR001030 - Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain
IPR015931 - Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3
IPR036008 - Aconitase, iron-sulfur domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6595175.1 3-isopropylmalate dehydratase large subunit, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]2.2e-05100Show/hide
Query:  VLLGTDSHTCTAGAFGQFASGIGNTDA
        VLLGTDSHTCTAGAFGQFASGIGNTDA
Subjt:  VLLGTDSHTCTAGAFGQFASGIGNTDA
XP_004148369.1 3-isopropylmalate dehydratase large subunit, chloroplastic [Cucumis sativus]2.2e-05100Show/hide
Query:  VLLGTDSHTCTAGAFGQFASGIGNTDA
        VLLGTDSHTCTAGAFGQFASGIGNTDA
Subjt:  VLLGTDSHTCTAGAFGQFASGIGNTDA
XP_008465910.1 PREDICTED: 3-isopropylmalate dehydratase large subunit [Cucumis melo]2.2e-05100Show/hide
Query:  VLLGTDSHTCTAGAFGQFASGIGNTDA
        VLLGTDSHTCTAGAFGQFASGIGNTDA
Subjt:  VLLGTDSHTCTAGAFGQFASGIGNTDA
XP_022132847.1 3-isopropylmalate dehydratase large subunit, chloroplastic [Momordica charantia]2.2e-05100Show/hide
Query:  VLLGTDSHTCTAGAFGQFASGIGNTDA
        VLLGTDSHTCTAGAFGQFASGIGNTDA
Subjt:  VLLGTDSHTCTAGAFGQFASGIGNTDA
XP_022972644.1 3-isopropylmalate dehydratase large subunit, chloroplastic [Cucurbita maxima]2.2e-05100Show/hide
Query:  VLLGTDSHTCTAGAFGQFASGIGNTDA
        VLLGTDSHTCTAGAFGQFASGIGNTDA
Subjt:  VLLGTDSHTCTAGAFGQFASGIGNTDA
TrEMBL top hitse value%identityAlignment
A0A0A0LEJ4 3-isopropylmalate dehydratase1.1e-05100Show/hide
Query:  VLLGTDSHTCTAGAFGQFASGIGNTDA
        VLLGTDSHTCTAGAFGQFASGIGNTDA
Subjt:  VLLGTDSHTCTAGAFGQFASGIGNTDA
A0A5D3E4R8 3-isopropylmalate dehydratase1.1e-05100Show/hide
Query:  VLLGTDSHTCTAGAFGQFASGIGNTDA
        VLLGTDSHTCTAGAFGQFASGIGNTDA
Subjt:  VLLGTDSHTCTAGAFGQFASGIGNTDA
A0A6J1BUZ5 3-isopropylmalate dehydratase1.1e-05100Show/hide
Query:  VLLGTDSHTCTAGAFGQFASGIGNTDA
        VLLGTDSHTCTAGAFGQFASGIGNTDA
Subjt:  VLLGTDSHTCTAGAFGQFASGIGNTDA
A0A6J1HIW0 3-isopropylmalate dehydratase1.1e-05100Show/hide
Query:  VLLGTDSHTCTAGAFGQFASGIGNTDA
        VLLGTDSHTCTAGAFGQFASGIGNTDA
Subjt:  VLLGTDSHTCTAGAFGQFASGIGNTDA
A0A6J1IC64 3-isopropylmalate dehydratase1.1e-05100Show/hide
Query:  VLLGTDSHTCTAGAFGQFASGIGNTDA
        VLLGTDSHTCTAGAFGQFASGIGNTDA
Subjt:  VLLGTDSHTCTAGAFGQFASGIGNTDA
SwissProt top hitse value%identityAlignment
B2KBD7 3-isopropylmalate dehydratase large subunit9.8e-0465.38Show/hide
Query:  VLLGTDSHTCTAGAFGQFASGIGNTD
        +L+G DSHTCT GA G FA+G+G+TD
Subjt:  VLLGTDSHTCTAGAFGQFASGIGNTD
O27439 Probable 3-isopropylmalate dehydratase large subunit4.4e-0473.08Show/hide
Query:  VLLGTDSHTCTAGAFGQFASGIGNTD
        V++GTDSHTCT GA G FA+GIG+TD
Subjt:  VLLGTDSHTCTAGAFGQFASGIGNTD
P81291 Isopropylmalate/citramalate isomerase large subunit3.4e-0473.08Show/hide
Query:  VLLGTDSHTCTAGAFGQFASGIGNTD
        V++G DSHTCT GAFG FA+GIG+TD
Subjt:  VLLGTDSHTCTAGAFGQFASGIGNTD
Q94AR8 3-isopropylmalate dehydratase large subunit, chloroplastic6.5e-0896.3Show/hide
Query:  VLLGTDSHTCTAGAFGQFASGIGNTDA
        VLLGTDSHTCTAGAFGQFA+GIGNTDA
Subjt:  VLLGTDSHTCTAGAFGQFASGIGNTDA
Arabidopsis top hitse value%identityAlignment
AT4G13430.1 isopropyl malate isomerase large subunit 14.6e-0996.3Show/hide
Query:  VLLGTDSHTCTAGAFGQFASGIGNTDA
        VLLGTDSHTCTAGAFGQFA+GIGNTDA
Subjt:  VLLGTDSHTCTAGAFGQFASGIGNTDA

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GTTCTGCTTGGTACAGACTCTCATACTTGTACAGCTGGTGCATTTGGTCAATTTGCTAGTGGAATTGGTAACACTGATGCA
mRNA sequenceShow/hide mRNA sequence
GTTCTGCTTGGTACAGACTCTCATACTTGTACAGCTGGTGCATTTGGTCAATTTGCTAGTGGAATTGGTAACACTGATGCA
Protein sequenceShow/hide protein sequence
VLLGTDSHTCTAGAFGQFASGIGNTDA