; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS001325 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS001325
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionAuxin-responsive protein
Genome locationscaffold36:3274201..3274791
RNA-Seq ExpressionMS001325
SyntenyMS001325
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0009734 - auxin-activated signaling pathway (biological process)
GO:0005634 - nucleus (cellular component)
GO:0005515 - protein binding (molecular function)
InterPro domainsIPR000270 - PB1 domain
IPR003311 - AUX/IAA protein
IPR033389 - AUX/IAA domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6598565.1 Auxin-induced protein AUX28, partial [Cucurbita argyrosperma subsp. sororia]3.3e-2955.03Show/hide
Query:  MELQLGLALPLHTQTLKPKPKPKPANSPRSTNPLSHTLPLPLLSWNHNPNDEDEHNNPTPTHFSTLHQEDEDEDKNRVVGWPPVESWRTKAFHCRPHLPP
        MELQLGL+LPLH   L+          PR  N L  T  LPLLSWN  P D+D   +   THFST+  + EDE+KN  VGWPP+E+WR KA    P  P 
Subjt:  MELQLGLALPLHTQTLKPKPKPKPANSPRSTNPLSHTLPLPLLSWNHNPNDEDEHNNPTPTHFSTLHQEDEDEDKNRVVGWPPVESWRTKAFHCRPHLPP

Query:  PPLNCRRPVAGHRSLFVKVKMEGVAITRKLDLGLYHSHNSLKNAIISMF
           N      G  SLFVKVKMEGVAI RKLDL LYHSHNSLK A+I+MF
Subjt:  PPLNCRRPVAGHRSLFVKVKMEGVAITRKLDLGLYHSHNSLKNAIISMF

XP_008445232.2 PREDICTED: auxin-responsive protein IAA29-like [Cucumis melo]1.1e-2952.76Show/hide
Query:  MELQLGLALPLHTQTLKPKPKPKPANSPRSTNPL---SHTLP--LPLLSWNHNPNDEDEHNNPTPTHFSTLHQEDEDEDKNRVVGWPPVESWRTKAFHCR
        MELQLGL+LPLH     P    KPA      +PL    + LP  LPLLSWN  P DED+ ++P  THF  +  + +DE+K + VGWPP+ESWR KAFH  
Subjt:  MELQLGLALPLHTQTLKPKPKPKPANSPRSTNPL---SHTLP--LPLLSWNHNPNDEDEHNNPTPTHFSTLHQEDEDEDKNRVVGWPPVESWRTKAFHCR

Query:  PHLPPPPLNCRRPV---------AGHRSLFVKVKMEGVAITRKLDLGLYHSHNSLKNAIISMF
           PP  ++ RRP+          G  SLFVKVKMEGVAI RKLDL LYHSH+SLK A+I+MF
Subjt:  PHLPPPPLNCRRPV---------AGHRSLFVKVKMEGVAITRKLDLGLYHSHNSLKNAIISMF

XP_022131637.1 auxin-responsive protein IAA29-like [Momordica charantia]1.8e-8098.03Show/hide
Query:  MELQLGLALPLHTQTLKPKPKPKPANSPRSTNPLSHTLPLPLLSWNHNPNDEDEHNNPTPTHFSTLHQEDEDEDKNRVVGWPPVESWRTKAFHCRPHL--
        MELQLGLALPLHTQTLKPKPKPKPANSPRSTNPLSHTLPLPLLSWNHNPNDEDEHNNPTPTHFSTLHQEDEDEDKNRVVGWPPVESWRTKAFHCRPHL  
Subjt:  MELQLGLALPLHTQTLKPKPKPKPANSPRSTNPLSHTLPLPLLSWNHNPNDEDEHNNPTPTHFSTLHQEDEDEDKNRVVGWPPVESWRTKAFHCRPHL--

Query:  -PPPPLNCRRPVAGHRSLFVKVKMEGVAITRKLDLGLYHSHNSLKNAIISMF
         PPPPLNCRRPVAGHRSLFVKVKMEGVAITRKLDLGLYHSHNSLKNAIISMF
Subjt:  -PPPPLNCRRPVAGHRSLFVKVKMEGVAITRKLDLGLYHSHNSLKNAIISMF

XP_022962174.1 auxin-responsive protein IAA29-like [Cucurbita moschata]8.6e-3055.03Show/hide
Query:  MELQLGLALPLHTQTLKPKPKPKPANSPRSTNPLSHTLPLPLLSWNHNPNDEDEHNNPTPTHFSTLHQEDEDEDKNRVVGWPPVESWRTKAFHCRPHLPP
        MELQLGL+LPLH    +          PR  N L  T  LPLLSWN  P D+D   +P  THFST+  + EDE+KN  VGWPP+E+WR KA    P  P 
Subjt:  MELQLGLALPLHTQTLKPKPKPKPANSPRSTNPLSHTLPLPLLSWNHNPNDEDEHNNPTPTHFSTLHQEDEDEDKNRVVGWPPVESWRTKAFHCRPHLPP

Query:  PPLNCRRPVAGHRSLFVKVKMEGVAITRKLDLGLYHSHNSLKNAIISMF
           N      G  SLFVKVKMEGVAI RKLDL LYHSHNSLK A+I+MF
Subjt:  PPLNCRRPVAGHRSLFVKVKMEGVAITRKLDLGLYHSHNSLKNAIISMF

XP_038886196.1 auxin-responsive protein IAA29-like [Benincasa hispida]3.3e-2951.23Show/hide
Query:  MELQLGLALPLHTQTLKPKPKPKPANSPRSTNP--LSHTLP--LPLLSWNHNPNDEDEHNNPTPTHFSTLHQEDEDEDKNRVVGWPPVESWRTKAFHCRP
        MELQLGL LP H         P   + P   +P  + + LP  LPLLSWN  P D+D+  +P  THFS +  + +DE+K   VGWPP+ESWR K FH +P
Subjt:  MELQLGLALPLHTQTLKPKPKPKPANSPRSTNP--LSHTLP--LPLLSWNHNPNDEDEHNNPTPTHFSTLHQEDEDEDKNRVVGWPPVESWRTKAFHCRP

Query:  HLPPPPLNCRRPVA---------GHRSLFVKVKMEGVAITRKLDLGLYHSHNSLKNAIISMF
          PP     RRPV          G  SLFVKVKMEGVAI RKLDL LYHSH SLK A+I+MF
Subjt:  HLPPPPLNCRRPVA---------GHRSLFVKVKMEGVAITRKLDLGLYHSHNSLKNAIISMF

TrEMBL top hitse value%identityAlignment
A0A0A0LPM6 Auxin-responsive protein1.0e-2851.55Show/hide
Query:  MELQLGLALPLHTQTLKPKPKPKPANSPRSTNP--LSHTLP--LPLLSWNHNPNDEDEHNNPTPTHFSTLHQEDEDEDKNRVVGWPPVESWRTKAFHCRP
        MELQLGL+LPLH+    P    KPA      +   L + LP  LPLLSWN  P DED+ ++P  THF  +  + +DE+K + VGWPP+ESWR KAF    
Subjt:  MELQLGLALPLHTQTLKPKPKPKPANSPRSTNP--LSHTLP--LPLLSWNHNPNDEDEHNNPTPTHFSTLHQEDEDEDKNRVVGWPPVESWRTKAFHCRP

Query:  HLPPPPLNCRRPV--------AGHRSLFVKVKMEGVAITRKLDLGLYHSHNSLKNAIISMF
          PP  +  RRP          G  SLFVKVKMEGVAI RKLDL LYHSH+SLK A+++MF
Subjt:  HLPPPPLNCRRPV--------AGHRSLFVKVKMEGVAITRKLDLGLYHSHNSLKNAIISMF

A0A1S3BCX7 Auxin-responsive protein5.4e-3052.76Show/hide
Query:  MELQLGLALPLHTQTLKPKPKPKPANSPRSTNPL---SHTLP--LPLLSWNHNPNDEDEHNNPTPTHFSTLHQEDEDEDKNRVVGWPPVESWRTKAFHCR
        MELQLGL+LPLH     P    KPA      +PL    + LP  LPLLSWN  P DED+ ++P  THF  +  + +DE+K + VGWPP+ESWR KAFH  
Subjt:  MELQLGLALPLHTQTLKPKPKPKPANSPRSTNPL---SHTLP--LPLLSWNHNPNDEDEHNNPTPTHFSTLHQEDEDEDKNRVVGWPPVESWRTKAFHCR

Query:  PHLPPPPLNCRRPV---------AGHRSLFVKVKMEGVAITRKLDLGLYHSHNSLKNAIISMF
           PP  ++ RRP+          G  SLFVKVKMEGVAI RKLDL LYHSH+SLK A+I+MF
Subjt:  PHLPPPPLNCRRPV---------AGHRSLFVKVKMEGVAITRKLDLGLYHSHNSLKNAIISMF

A0A5A7VD13 Auxin-responsive protein5.4e-3052.76Show/hide
Query:  MELQLGLALPLHTQTLKPKPKPKPANSPRSTNPL---SHTLP--LPLLSWNHNPNDEDEHNNPTPTHFSTLHQEDEDEDKNRVVGWPPVESWRTKAFHCR
        MELQLGL+LPLH     P    KPA      +PL    + LP  LPLLSWN  P DED+ ++P  THF  +  + +DE+K + VGWPP+ESWR KAFH  
Subjt:  MELQLGLALPLHTQTLKPKPKPKPANSPRSTNPL---SHTLP--LPLLSWNHNPNDEDEHNNPTPTHFSTLHQEDEDEDKNRVVGWPPVESWRTKAFHCR

Query:  PHLPPPPLNCRRPV---------AGHRSLFVKVKMEGVAITRKLDLGLYHSHNSLKNAIISMF
           PP  ++ RRP+          G  SLFVKVKMEGVAI RKLDL LYHSH+SLK A+I+MF
Subjt:  PHLPPPPLNCRRPV---------AGHRSLFVKVKMEGVAITRKLDLGLYHSHNSLKNAIISMF

A0A6J1BRK7 Auxin-responsive protein8.8e-8198.03Show/hide
Query:  MELQLGLALPLHTQTLKPKPKPKPANSPRSTNPLSHTLPLPLLSWNHNPNDEDEHNNPTPTHFSTLHQEDEDEDKNRVVGWPPVESWRTKAFHCRPHL--
        MELQLGLALPLHTQTLKPKPKPKPANSPRSTNPLSHTLPLPLLSWNHNPNDEDEHNNPTPTHFSTLHQEDEDEDKNRVVGWPPVESWRTKAFHCRPHL  
Subjt:  MELQLGLALPLHTQTLKPKPKPKPANSPRSTNPLSHTLPLPLLSWNHNPNDEDEHNNPTPTHFSTLHQEDEDEDKNRVVGWPPVESWRTKAFHCRPHL--

Query:  -PPPPLNCRRPVAGHRSLFVKVKMEGVAITRKLDLGLYHSHNSLKNAIISMF
         PPPPLNCRRPVAGHRSLFVKVKMEGVAITRKLDLGLYHSHNSLKNAIISMF
Subjt:  -PPPPLNCRRPVAGHRSLFVKVKMEGVAITRKLDLGLYHSHNSLKNAIISMF

A0A6J1HG86 Auxin-responsive protein4.2e-3055.03Show/hide
Query:  MELQLGLALPLHTQTLKPKPKPKPANSPRSTNPLSHTLPLPLLSWNHNPNDEDEHNNPTPTHFSTLHQEDEDEDKNRVVGWPPVESWRTKAFHCRPHLPP
        MELQLGL+LPLH    +          PR  N L  T  LPLLSWN  P D+D   +P  THFST+  + EDE+KN  VGWPP+E+WR KA    P  P 
Subjt:  MELQLGLALPLHTQTLKPKPKPKPANSPRSTNPLSHTLPLPLLSWNHNPNDEDEHNNPTPTHFSTLHQEDEDEDKNRVVGWPPVESWRTKAFHCRPHLPP

Query:  PPLNCRRPVAGHRSLFVKVKMEGVAITRKLDLGLYHSHNSLKNAIISMF
           N      G  SLFVKVKMEGVAI RKLDL LYHSHNSLK A+I+MF
Subjt:  PPLNCRRPVAGHRSLFVKVKMEGVAITRKLDLGLYHSHNSLKNAIISMF

SwissProt top hitse value%identityAlignment
P0C133 Auxin-responsive protein IAA316.2e-0738.1Show/hide
Query:  KNRVVGWPPVESWRTKAFH----CRPHLPPPPLNC-----RRPVAGHRSLFVKVKMEGVAITRKLDLGLYHSHNSLKNAIISMF
        K +VVGWPPV S+R              PPP         +  VAG   LFVKV M+G    RK+DL +Y  +  L+ A+ +MF
Subjt:  KNRVVGWPPVESWRTKAFH----CRPHLPPPPLNC-----RRPVAGHRSLFVKVKMEGVAITRKLDLGLYHSHNSLKNAIISMF

P93830 Auxin-responsive protein IAA172.1e-0738.16Show/hide
Query:  KNRVVGWPPVESWRTKAFHCRPHLPPPPLNCRRPVAG-HRSLFVKVKMEGVAITRKLDLGLYHSHNSLKNAIISMF
        K +VVGWPPV S+R              ++C++   G   + FVKV M+G    RK+DL +Y S++ L NA+ +MF
Subjt:  KNRVVGWPPVESWRTKAFHCRPHLPPPPLNCRRPVAG-HRSLFVKVKMEGVAITRKLDLGLYHSHNSLKNAIISMF

Q8LQ74 Auxin-responsive protein IAA61.2e-0533.77Show/hide
Query:  VVGWPPVESWRTK--AFHCRPHLPPPP---LNCRRPVAGHRSLFVKVKMEGVAITRKLDLGLYHSHNSLKNAIISMF
        VVGWPP+ S+R    +     H P P     N +  +   ++  VK+ M+G+ I RK+DL  Y+S++ L +A+  +F
Subjt:  VVGWPPVESWRTK--AFHCRPHLPPPP---LNCRRPVAGHRSLFVKVKMEGVAITRKLDLGLYHSHNSLKNAIISMF

Q93WC4 Auxin-responsive protein IAA297.9e-1033.09Show/hide
Query:  LLSWNHNPNDEDEHNNPTPTHFSTLHQEDEDEDKNRVVGWPPVESWRTK-----------AFHCRPH-----LPPPPLNCRRP------------VAGHR
        L + N  PN+EDE  +P  +  S ++  D++E+ + VVGWPPV++   K             HC  H     +     N   P            ++   
Subjt:  LLSWNHNPNDEDEHNNPTPTHFSTLHQEDEDEDKNRVVGWPPVESWRTK-----------AFHCRPH-----LPPPPLNCRRP------------VAGHR

Query:  SLFVKVKMEGVAITRKLDLGLYHSHNSLKNAIISMF
        S++VKVKM+GVAI RK+D+ L++S+ SL N++I+MF
Subjt:  SLFVKVKMEGVAITRKLDLGLYHSHNSLKNAIISMF

Q9LG86 Auxin-responsive protein IAA21.5e-0533.73Show/hide
Query:  VVGWPPVESWR----TKAFHCRPHLPPPPLN-------CRRPVAGHRSLFVKVKMEGVAITRKLDLGLYHSHNSLKNAIISMF
        VVGWPPV S+R    + +       PPPP +         +     + +FVK+ M+GV I RK+DL  Y  +  L  A+  +F
Subjt:  VVGWPPVESWR----TKAFHCRPHLPPPPLN-------CRRPVAGHRSLFVKVKMEGVAITRKLDLGLYHSHNSLKNAIISMF

Arabidopsis top hitse value%identityAlignment
AT1G04250.1 AUX/IAA transcriptional regulator family protein1.5e-0838.16Show/hide
Query:  KNRVVGWPPVESWRTKAFHCRPHLPPPPLNCRRPVAG-HRSLFVKVKMEGVAITRKLDLGLYHSHNSLKNAIISMF
        K +VVGWPPV S+R              ++C++   G   + FVKV M+G    RK+DL +Y S++ L NA+ +MF
Subjt:  KNRVVGWPPVESWRTKAFHCRPHLPPPPLNCRRPVAG-HRSLFVKVKMEGVAITRKLDLGLYHSHNSLKNAIISMF

AT2G22670.1 indoleacetic acid-induced protein 81.2e-0536Show/hide
Query:  KNRVVGWPPVESWRTKAFHCRPHLPPPPLNCRRPVAGHRSLFVKVKMEGVAITRKLDLGLYHSHNSLKNAIISMF
        K +VVGWPP+ S+R              ++ +    G   LFVKV M+G    RK+DL  Y S+  L +A+  MF
Subjt:  KNRVVGWPPVESWRTKAFHCRPHLPPPPLNCRRPVAGHRSLFVKVKMEGVAITRKLDLGLYHSHNSLKNAIISMF

AT2G22670.2 indoleacetic acid-induced protein 81.2e-0536Show/hide
Query:  KNRVVGWPPVESWRTKAFHCRPHLPPPPLNCRRPVAGHRSLFVKVKMEGVAITRKLDLGLYHSHNSLKNAIISMF
        K +VVGWPP+ S+R              ++ +    G   LFVKV M+G    RK+DL  Y S+  L +A+  MF
Subjt:  KNRVVGWPPVESWRTKAFHCRPHLPPPPLNCRRPVAGHRSLFVKVKMEGVAITRKLDLGLYHSHNSLKNAIISMF

AT4G14550.1 indole-3-acetic acid inducible 142.4e-0629.05Show/hide
Query:  ELQLGLALPLHTQTLKPKPKPKPANSPRSTNPLSHTLPLPLLSWNHNPNDEDEHNNPTPTHFSTLHQEDEDEDKNRVVGWPPVESWRTKAFHCRPHLPPP
        E +L L LP  T+T++   K    N        S T+ L L   ++     D + N  P   + L    +   K +VVGWPPV ++R        +    
Subjt:  ELQLGLALPLHTQTLKPKPKPKPANSPRSTNPLSHTLPLPLLSWNHNPNDEDEHNNPTPTHFSTLHQEDEDEDKNRVVGWPPVESWRTKAFHCRPHLPPP

Query:  PLNCRRPVAGHRSLFVKVKMEGVAITRKLDLGLYHSHNSLKNAIISMF
                 G    FVKV M+G    RK+DL +Y S+  L +A+  MF
Subjt:  PLNCRRPVAGHRSLFVKVKMEGVAITRKLDLGLYHSHNSLKNAIISMF

AT4G32280.1 indole-3-acetic acid inducible 295.6e-1133.09Show/hide
Query:  LLSWNHNPNDEDEHNNPTPTHFSTLHQEDEDEDKNRVVGWPPVESWRTK-----------AFHCRPH-----LPPPPLNCRRP------------VAGHR
        L + N  PN+EDE  +P  +  S ++  D++E+ + VVGWPPV++   K             HC  H     +     N   P            ++   
Subjt:  LLSWNHNPNDEDEHNNPTPTHFSTLHQEDEDEDKNRVVGWPPVESWRTK-----------AFHCRPH-----LPPPPLNCRRP------------VAGHR

Query:  SLFVKVKMEGVAITRKLDLGLYHSHNSLKNAIISMF
        S++VKVKM+GVAI RK+D+ L++S+ SL N++I+MF
Subjt:  SLFVKVKMEGVAITRKLDLGLYHSHNSLKNAIISMF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TTTTCAATGGAGCTCCAACTTGGCCTCGCTCTTCCCCTTCACACTCAAACCCTCAAACCTAAGCCTAAGCCTAAGCCTGCTAATTCTCCACGCTCTACAAACCCCCTTTC
CCACACATTGCCTTTGCCTTTGCTCTCTTGGAACCACAACCCCAACGACGAAGATGAACACAACAACCCCACACCCACACACTTCTCCACTCTTCACCAGGAGGATGAGG
ATGAAGACAAGAACCGGGTAGTGGGGTGGCCGCCCGTCGAGTCATGGAGGACCAAGGCGTTTCACTGCCGCCCTCACCTGCCGCCGCCGCCGCTGAATTGCCGTCGTCCA
GTAGCAGGACATCGCAGTTTGTTCGTGAAGGTGAAAATGGAGGGTGTTGCAATAACGAGGAAACTTGATCTCGGCCTCTATCACTCTCATAACTCCCTCAAAAATGCCAT
AATCTCCATGTTC
mRNA sequenceShow/hide mRNA sequence
TTTTCAATGGAGCTCCAACTTGGCCTCGCTCTTCCCCTTCACACTCAAACCCTCAAACCTAAGCCTAAGCCTAAGCCTGCTAATTCTCCACGCTCTACAAACCCCCTTTC
CCACACATTGCCTTTGCCTTTGCTCTCTTGGAACCACAACCCCAACGACGAAGATGAACACAACAACCCCACACCCACACACTTCTCCACTCTTCACCAGGAGGATGAGG
ATGAAGACAAGAACCGGGTAGTGGGGTGGCCGCCCGTCGAGTCATGGAGGACCAAGGCGTTTCACTGCCGCCCTCACCTGCCGCCGCCGCCGCTGAATTGCCGTCGTCCA
GTAGCAGGACATCGCAGTTTGTTCGTGAAGGTGAAAATGGAGGGTGTTGCAATAACGAGGAAACTTGATCTCGGCCTCTATCACTCTCATAACTCCCTCAAAAATGCCAT
AATCTCCATGTTC
Protein sequenceShow/hide protein sequence
FSMELQLGLALPLHTQTLKPKPKPKPANSPRSTNPLSHTLPLPLLSWNHNPNDEDEHNNPTPTHFSTLHQEDEDEDKNRVVGWPPVESWRTKAFHCRPHLPPPPLNCRRP
VAGHRSLFVKVKMEGVAITRKLDLGLYHSHNSLKNAIISMF