; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS001335 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS001335
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Description40S ribosomal protein S11
Genome locationscaffold36:3330766..3331260
RNA-Seq ExpressionMS001335
SyntenyMS001335
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0022627 - cytosolic small ribosomal subunit (cellular component)
GO:0003723 - RNA binding (molecular function)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR000266 - Ribosomal protein S17/S11
IPR012340 - Nucleic acid-binding, OB-fold
IPR032440 - 40S ribosomal protein S11, N-terminal


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6409515.1 hypothetical protein SASPL_127555 [Salvia splendens]6.1e-5177.21Show/hide
Query:  GTYIDKKCPFTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHIAPCFRVKEGDHVIIGQCRFIHGLHMP-LLLLVLQLFSYL
        GTYIDKKCPFTG VSIRGRILAGTCHSAKM+RTIIVRRNYLH+VKKYQRYEKRHSNIPAHI+PCFRVKEGDHV IGQCR +   +    +LL +Q     
Subjt:  GTYIDKKCPFTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHIAPCFRVKEGDHVIIGQCRFIHGLHMP-LLLLVLQLFSYL

Query:  TSPIFCRPLSKTVRFNVLKVIPAGSSTAGKKAFTGI
        +  +FCRPLSKTVRFNVLKVIPAGSS  GKKAFT +
Subjt:  TSPIFCRPLSKTVRFNVLKVIPAGSSTAGKKAFTGI

KAG6585484.1 40S ribosomal protein S11-3, partial [Cucurbita argyrosperma subsp. sororia]3.0e-5079.85Show/hide
Query:  GTYIDKKCPFTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHIAPCFRVKEGDHVIIGQCRFIHGLHMPLLLLVLQLFSYLT
        GTYIDKKCPFTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHIAPCFRVKEGDHVIIGQ                       
Subjt:  GTYIDKKCPFTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHIAPCFRVKEGDHVIIGQCRFIHGLHMPLLLLVLQLFSYLT

Query:  SPIFCRPLSKTVRFNVLKVIPAGSSTAGKKAFTG
            CRPLSKTVRFNVLKVIPAGSSTAGKKAFTG
Subjt:  SPIFCRPLSKTVRFNVLKVIPAGSSTAGKKAFTG

KAG7029498.1 40S ribosomal protein S11-3, partial [Cucurbita argyrosperma subsp. argyrosperma]1.0e-5080Show/hide
Query:  GTYIDKKCPFTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHIAPCFRVKEGDHVIIGQCRFIHGLHMPLLLLVLQLFSYLT
        GTYIDKKCPFTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHIAPCFRVKEGDHVIIGQ                       
Subjt:  GTYIDKKCPFTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHIAPCFRVKEGDHVIIGQCRFIHGLHMPLLLLVLQLFSYLT

Query:  SPIFCRPLSKTVRFNVLKVIPAGSSTAGKKAFTGI
            CRPLSKTVRFNVLKVIPAGSSTAGKKAFTGI
Subjt:  SPIFCRPLSKTVRFNVLKVIPAGSSTAGKKAFTGI

XP_022132263.1 40S ribosomal protein S11 [Momordica charantia]1.0e-5080Show/hide
Query:  GTYIDKKCPFTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHIAPCFRVKEGDHVIIGQCRFIHGLHMPLLLLVLQLFSYLT
        GTYIDKKCPFTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHIAPCFRVKEGDHVIIGQ                       
Subjt:  GTYIDKKCPFTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHIAPCFRVKEGDHVIIGQCRFIHGLHMPLLLLVLQLFSYLT

Query:  SPIFCRPLSKTVRFNVLKVIPAGSSTAGKKAFTGI
            CRPLSKTVRFNVLKVIPAGSSTAGKKAFTGI
Subjt:  SPIFCRPLSKTVRFNVLKVIPAGSSTAGKKAFTGI

XP_022996631.1 40S ribosomal protein S11-like [Cucurbita maxima]1.3e-5079.26Show/hide
Query:  GTYIDKKCPFTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHIAPCFRVKEGDHVIIGQCRFIHGLHMPLLLLVLQLFSYLT
        GTYIDKKCPFTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHIAPCFRVKEGDHVIIGQ                       
Subjt:  GTYIDKKCPFTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHIAPCFRVKEGDHVIIGQCRFIHGLHMPLLLLVLQLFSYLT

Query:  SPIFCRPLSKTVRFNVLKVIPAGSSTAGKKAFTGI
            CRPLSKTVRFNVLKVIPAGSSTAGKKAFTG+
Subjt:  SPIFCRPLSKTVRFNVLKVIPAGSSTAGKKAFTGI

TrEMBL top hitse value%identityAlignment
A0A498HXN9 Ubiquitin-like domain-containing protein5.5e-5077.04Show/hide
Query:  GTYIDKKCPFTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHIAPCFRVKEGDHVIIGQCRFIHGLHMPLLLLVLQLFSYLT
        GTYIDKKCPFTG VSIRGRILAGTCHSAKM +TIIVRRNYLHY+KKYQRYEKRHSNIPAH++PCFRVKEGDHV IGQCR     H          FS+ T
Subjt:  GTYIDKKCPFTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHIAPCFRVKEGDHVIIGQCRFIHGLHMPLLLLVLQLFSYLT

Query:  SPIFCRPLSKTVRFNVLKVIPAGSSTAGKKAFTGI
        SP+F RPLSKT RFNVLKV PAGSS  GKKAF GI
Subjt:  SPIFCRPLSKTVRFNVLKVIPAGSSTAGKKAFTGI

A0A6J1BVS5 40S ribosomal protein S115.0e-5180Show/hide
Query:  GTYIDKKCPFTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHIAPCFRVKEGDHVIIGQCRFIHGLHMPLLLLVLQLFSYLT
        GTYIDKKCPFTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHIAPCFRVKEGDHVIIGQ                       
Subjt:  GTYIDKKCPFTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHIAPCFRVKEGDHVIIGQCRFIHGLHMPLLLLVLQLFSYLT

Query:  SPIFCRPLSKTVRFNVLKVIPAGSSTAGKKAFTGI
            CRPLSKTVRFNVLKVIPAGSSTAGKKAFTGI
Subjt:  SPIFCRPLSKTVRFNVLKVIPAGSSTAGKKAFTGI

A0A6J1HEQ3 40S ribosomal protein S115.0e-5180Show/hide
Query:  GTYIDKKCPFTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHIAPCFRVKEGDHVIIGQCRFIHGLHMPLLLLVLQLFSYLT
        GTYIDKKCPFTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHIAPCFRVKEGDHVIIGQ                       
Subjt:  GTYIDKKCPFTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHIAPCFRVKEGDHVIIGQCRFIHGLHMPLLLLVLQLFSYLT

Query:  SPIFCRPLSKTVRFNVLKVIPAGSSTAGKKAFTGI
            CRPLSKTVRFNVLKVIPAGSSTAGKKAFTGI
Subjt:  SPIFCRPLSKTVRFNVLKVIPAGSSTAGKKAFTGI

A0A6J1K5C0 40S ribosomal protein S11-like6.5e-5179.26Show/hide
Query:  GTYIDKKCPFTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHIAPCFRVKEGDHVIIGQCRFIHGLHMPLLLLVLQLFSYLT
        GTYIDKKCPFTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHIAPCFRVKEGDHVIIGQ                       
Subjt:  GTYIDKKCPFTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHIAPCFRVKEGDHVIIGQCRFIHGLHMPLLLLVLQLFSYLT

Query:  SPIFCRPLSKTVRFNVLKVIPAGSSTAGKKAFTGI
            CRPLSKTVRFNVLKVIPAGSSTAGKKAFTG+
Subjt:  SPIFCRPLSKTVRFNVLKVIPAGSSTAGKKAFTGI

A0A6J1KTV2 40S ribosomal protein S115.0e-5180Show/hide
Query:  GTYIDKKCPFTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHIAPCFRVKEGDHVIIGQCRFIHGLHMPLLLLVLQLFSYLT
        GTYIDKKCPFTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHIAPCFRVKEGDHVIIGQ                       
Subjt:  GTYIDKKCPFTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHIAPCFRVKEGDHVIIGQCRFIHGLHMPLLLLVLQLFSYLT

Query:  SPIFCRPLSKTVRFNVLKVIPAGSSTAGKKAFTGI
            CRPLSKTVRFNVLKVIPAGSSTAGKKAFTGI
Subjt:  SPIFCRPLSKTVRFNVLKVIPAGSSTAGKKAFTGI

SwissProt top hitse value%identityAlignment
P16181 40S ribosomal protein S11-15.0e-4871.32Show/hide
Query:  GTYIDKKCPFTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHIAPCFRVKEGDHVIIGQCRFIHGLHMPLLLLVLQLFSYLT
        G Y+DKKCPFTGTVSIRGRILAGTCHSAKM RTIIVRR+YLH+VKKYQRYEKRHSNIPAH++PCFRVKEGDH+IIGQ                       
Subjt:  GTYIDKKCPFTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHIAPCFRVKEGDHVIIGQCRFIHGLHMPLLLLVLQLFSYLT

Query:  SPIFCRPLSKTVRFNVLKVIPAGSSTA-GKKAFTGI
            CRPLSKTVRFNVLKVIPAGSS++ GKKAFTG+
Subjt:  SPIFCRPLSKTVRFNVLKVIPAGSSTA-GKKAFTGI

P17093 40S ribosomal protein S112.9e-4872.59Show/hide
Query:  GTYIDKKCPFTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHIAPCFRVKEGDHVIIGQCRFIHGLHMPLLLLVLQLFSYLT
        GTYIDKKCPFTG VSIRGRILAGTCHSAKM RTIIVRRNYLH++KKYQRYEKRHSNIPAHI+P FRVKEGDHVIIGQ                       
Subjt:  GTYIDKKCPFTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHIAPCFRVKEGDHVIIGQCRFIHGLHMPLLLLVLQLFSYLT

Query:  SPIFCRPLSKTVRFNVLKVIPAGSSTAGKKAFTGI
            CRPLSKTVRFNVLKVIPAGSS+  KKAFTG+
Subjt:  SPIFCRPLSKTVRFNVLKVIPAGSSTAGKKAFTGI

P25460 40S ribosomal protein S112.6e-4974.44Show/hide
Query:  GTYIDKKCPFTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHIAPCFRVKEGDHVIIGQCRFIHGLHMPLLLLVLQLFSYLT
        GTYIDKKCPFTGTVSIRGRI+AGTCHSAKM RTIIVRRNYLH+VKKYQRYEKRHSNIPAHI+PCFRVKEGDHVIIGQ                       
Subjt:  GTYIDKKCPFTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHIAPCFRVKEGDHVIIGQCRFIHGLHMPLLLLVLQLFSYLT

Query:  SPIFCRPLSKTVRFNVLKVIPAGSSTAGKKAFT
            CRPLSKTVRFNV+KVIPAGS+ AGKKAFT
Subjt:  SPIFCRPLSKTVRFNVLKVIPAGSSTAGKKAFT

P42733 40S ribosomal protein S11-34.5e-4972.59Show/hide
Query:  GTYIDKKCPFTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHIAPCFRVKEGDHVIIGQCRFIHGLHMPLLLLVLQLFSYLT
        G YID KCPFTGTVSIRGRILAGTCHSAKM RTIIVRRNYLH+VKKYQRYEKRHSNIPAH++PCFRVKEGDHVIIGQ                       
Subjt:  GTYIDKKCPFTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHIAPCFRVKEGDHVIIGQCRFIHGLHMPLLLLVLQLFSYLT

Query:  SPIFCRPLSKTVRFNVLKVIPAGSSTAGKKAFTGI
            CRPLSKTVRFNVLKVIPAG+S  GKKAFTG+
Subjt:  SPIFCRPLSKTVRFNVLKVIPAGSSTAGKKAFTGI

Q9M5M1 40S ribosomal protein S111.0e-4873.33Show/hide
Query:  GTYIDKKCPFTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHIAPCFRVKEGDHVIIGQCRFIHGLHMPLLLLVLQLFSYLT
        GTYIDKKCPFTGTVSIRGRILAGTCHSAKM RTIIVRRNYLH++KKYQRYEKRHSNIPAH++PCFRVKEGDHVIIGQ                       
Subjt:  GTYIDKKCPFTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHIAPCFRVKEGDHVIIGQCRFIHGLHMPLLLLVLQLFSYLT

Query:  SPIFCRPLSKTVRFNVLKVIPAGSSTAGKKAFTGI
            CRPLSKTVRFNVLKVIPAGSS   KKAFT I
Subjt:  SPIFCRPLSKTVRFNVLKVIPAGSSTAGKKAFTGI

Arabidopsis top hitse value%identityAlignment
AT3G48930.1 Nucleic acid-binding, OB-fold-like protein3.5e-4971.32Show/hide
Query:  GTYIDKKCPFTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHIAPCFRVKEGDHVIIGQCRFIHGLHMPLLLLVLQLFSYLT
        G Y+DKKCPFTGTVSIRGRILAGTCHSAKM RTIIVRR+YLH+VKKYQRYEKRHSNIPAH++PCFRVKEGDH+IIGQ                       
Subjt:  GTYIDKKCPFTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHIAPCFRVKEGDHVIIGQCRFIHGLHMPLLLLVLQLFSYLT

Query:  SPIFCRPLSKTVRFNVLKVIPAGSSTA-GKKAFTGI
            CRPLSKTVRFNVLKVIPAGSS++ GKKAFTG+
Subjt:  SPIFCRPLSKTVRFNVLKVIPAGSSTA-GKKAFTGI

AT4G30800.1 Nucleic acid-binding, OB-fold-like protein2.3e-4870.37Show/hide
Query:  GTYIDKKCPFTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHIAPCFRVKEGDHVIIGQCRFIHGLHMPLLLLVLQLFSYLT
        GTYID+KCPFTGTVSIRGRIL+GTCHSAKM RTIIVRR+YLH+VKKY+RYEKRHSNIPAH++PCFRVKEGD V IGQ                       
Subjt:  GTYIDKKCPFTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHIAPCFRVKEGDHVIIGQCRFIHGLHMPLLLLVLQLFSYLT

Query:  SPIFCRPLSKTVRFNVLKVIPAGSSTAGKKAFTGI
            CRPLSKTVRFNVLKVIPAGSS+ GKKAFTG+
Subjt:  SPIFCRPLSKTVRFNVLKVIPAGSSTAGKKAFTGI

AT5G23740.1 ribosomal protein S11-beta3.2e-5072.59Show/hide
Query:  GTYIDKKCPFTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHIAPCFRVKEGDHVIIGQCRFIHGLHMPLLLLVLQLFSYLT
        G YID KCPFTGTVSIRGRILAGTCHSAKM RTIIVRRNYLH+VKKYQRYEKRHSNIPAH++PCFRVKEGDHVIIGQ                       
Subjt:  GTYIDKKCPFTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHIAPCFRVKEGDHVIIGQCRFIHGLHMPLLLLVLQLFSYLT

Query:  SPIFCRPLSKTVRFNVLKVIPAGSSTAGKKAFTGI
            CRPLSKTVRFNVLKVIPAG+S  GKKAFTG+
Subjt:  SPIFCRPLSKTVRFNVLKVIPAGSSTAGKKAFTGI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GGAACATATATTGATAAGAAGTGTCCATTTACTGGCACTGTTTCTATCAGGGGGCGTATACTTGCTGGTACCTGCCACAGTGCCAAGATGGTGAGAACCATCATTGTCAG
ACGTAATTATCTGCACTATGTGAAGAAATACCAAAGGTACGAGAAGAGACACTCTAACATTCCAGCACACATAGCTCCTTGCTTTAGGGTGAAAGAGGGAGACCATGTCA
TCATTGGCCAGTGCAGGTTTATACATGGACTTCACATGCCTCTGCTGCTTTTAGTCTTGCAACTTTTTAGTTACTTAACATCGCCTATCTTTTGCAGGCCGTTGTCGAAG
ACAGTGAGGTTTAATGTATTGAAAGTGATTCCTGCTGGATCATCTACAGCTGGTAAAAAGGCTTTCACAGGAATT
mRNA sequenceShow/hide mRNA sequence
GGAACATATATTGATAAGAAGTGTCCATTTACTGGCACTGTTTCTATCAGGGGGCGTATACTTGCTGGTACCTGCCACAGTGCCAAGATGGTGAGAACCATCATTGTCAG
ACGTAATTATCTGCACTATGTGAAGAAATACCAAAGGTACGAGAAGAGACACTCTAACATTCCAGCACACATAGCTCCTTGCTTTAGGGTGAAAGAGGGAGACCATGTCA
TCATTGGCCAGTGCAGGTTTATACATGGACTTCACATGCCTCTGCTGCTTTTAGTCTTGCAACTTTTTAGTTACTTAACATCGCCTATCTTTTGCAGGCCGTTGTCGAAG
ACAGTGAGGTTTAATGTATTGAAAGTGATTCCTGCTGGATCATCTACAGCTGGTAAAAAGGCTTTCACAGGAATT
Protein sequenceShow/hide protein sequence
GTYIDKKCPFTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHIAPCFRVKEGDHVIIGQCRFIHGLHMPLLLLVLQLFSYLTSPIFCRPLSK
TVRFNVLKVIPAGSSTAGKKAFTGI