CuGenDBv2

Gene ID	MS001339
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	DNA ligase
Genome location	scaffold36:3345545..3345916
RNA-Seq Expression	MS001339
Synteny	MS001339
Gene Ontology terms	NA
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

XP_022131639.1 uncharacterized protein LOC111004768 [Momordica charantia]

1.7e-63

99.19

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Query:  MLADFHHSSSFAHKLKSSIGCFRASDQPSTKSPCSWFKSTAAEFPDLLDRCRYLVARIGRGGRRRYHASPDFTYDSSSYALNFEDDSRYDDEFPLRNFAA
        MLADFHHSSSFAHKLKSSIGCFRASDQPSTKSPCSWFKSTAAEFPDLLDRCRYLVARIGRG RRRYHASPDFTYDSSSYALNFEDDSRYDDEFPLRNFAA
Subjt:  MLADFHHSSSFAHKLKSSIGCFRASDQPSTKSPCSWFKSTAAEFPDLLDRCRYLVARIGRGGRRRYHASPDFTYDSSSYALNFEDDSRYDDEFPLRNFAA

Query:  RLPRLPAAKFAGSQAGVSTVAACS
        RLPRLPAAKFAGSQAGVSTVAACS
Subjt:  RLPRLPAAKFAGSQAGVSTVAACS

XP_022138148.1 uncharacterized protein LOC111009386 [Momordica charantia]

1.9e-22

58.97

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Query:  MLADFHHSS--SFAHKLKSSIGCFRA--------SDQPSTKSPCSWFKSTAAEFPDLLDRCRYLVARIGRGGRRRYHASPDFTYDSSSYALNFEDD-SRY
        ML + ++SS  SF HKLKSSI CFRA         D+ S +SP S  KSTA+E  +L   CR LVARIGR  RRRYH S DF YD SSYALNFED+ +RY
Subjt:  MLADFHHSS--SFAHKLKSSIGCFRA--------SDQPSTKSPCSWFKSTAAEFPDLLDRCRYLVARIGRGGRRRYHASPDFTYDSSSYALNFEDD-SRY

Query:  DDEFPLRNFAARLPRLP
        DD+FP+R+FA+RLP  P
Subjt:  DDEFPLRNFAARLPRLP

XP_022962228.1 uncharacterized protein LOC111462741 [Cucurbita moschata]

1.5e-32

62.88

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Query:  MLADFHHSSSFAHKLKSSIGCFRA------SDQPS---TKSPCSWFKSTAAEFPDLLDRCRYLVARIGRGGRRRYHASPDFTYDSSSYALNFEDDSRYDD
        ML  FHHS +FA KLKSS  CF         D PS   T+SPCSWFKST  EF  +L RCRYL+ARI R  R+RY AS DF+YDSSSYALNFEDD R DD
Subjt:  MLADFHHSSSFAHKLKSSIGCFRA------SDQPS---TKSPCSWFKSTAAEFPDLLDRCRYLVARIGRGGRRRYHASPDFTYDSSSYALNFEDDSRYDD

Query:  EFPLRNFAARLP-----RLPAAKFAGSQAGVS
        EFP RNF AR P     R+PAAKFAGS+ G+S
Subjt:  EFPLRNFAARLP-----RLPAAKFAGSQAGVS

XP_022997531.1 uncharacterized protein LOC111492424 [Cucurbita maxima]

3.4e-32

62.88

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Query:  MLADFHHSSSFAHKLKSSIGCFRA------SDQPS---TKSPCSWFKSTAAEFPDLLDRCRYLVARIGRGGRRRYHASPDFTYDSSSYALNFEDDSRYDD
        ML  FHHS +FA KLKSS  CF         D PS   TKSPCSWFKST  EF  +L RCRYL+ARI R  R+RY AS DFTYDSSSYALNF+DD R DD
Subjt:  MLADFHHSSSFAHKLKSSIGCFRA------SDQPS---TKSPCSWFKSTAAEFPDLLDRCRYLVARIGRGGRRRYHASPDFTYDSSSYALNFEDDSRYDD

Query:  EFPLRNFAARLP-----RLPAAKFAGSQAGVS
        EFP R+F AR P     R PAAKFAGS+ G+S
Subjt:  EFPLRNFAARLP-----RLPAAKFAGSQAGVS

XP_023546798.1 uncharacterized protein LOC111805797 [Cucurbita pepo subsp. pepo]

3.4e-32

62.88

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Query:  MLADFHHSSSFAHKLKSSIGCFRA------SDQPS---TKSPCSWFKSTAAEFPDLLDRCRYLVARIGRGGRRRYHASPDFTYDSSSYALNFEDDSRYDD
        ML  FHHS +FA KLKSS  CF         D PS   T SPCSWFKST  EF  +L RCRYL+ARI R  R+RY AS DF+YDSSSYALNFEDD R DD
Subjt:  MLADFHHSSSFAHKLKSSIGCFRA------SDQPS---TKSPCSWFKSTAAEFPDLLDRCRYLVARIGRGGRRRYHASPDFTYDSSSYALNFEDDSRYDD

Query:  EFPLRNFAARLP-----RLPAAKFAGSQAGVS
        EFP RNF AR P     R+PAAKFAGS+ G+S
Subjt:  EFPLRNFAARLP-----RLPAAKFAGSQAGVS

TrEMBL top hits

e value

%identity

Alignment

A0A6J1BQU1 uncharacterized protein LOC111004768

8.1e-64

99.19

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Query:  MLADFHHSSSFAHKLKSSIGCFRASDQPSTKSPCSWFKSTAAEFPDLLDRCRYLVARIGRGGRRRYHASPDFTYDSSSYALNFEDDSRYDDEFPLRNFAA
        MLADFHHSSSFAHKLKSSIGCFRASDQPSTKSPCSWFKSTAAEFPDLLDRCRYLVARIGRG RRRYHASPDFTYDSSSYALNFEDDSRYDDEFPLRNFAA
Subjt:  MLADFHHSSSFAHKLKSSIGCFRASDQPSTKSPCSWFKSTAAEFPDLLDRCRYLVARIGRGGRRRYHASPDFTYDSSSYALNFEDDSRYDDEFPLRNFAA

Query:  RLPRLPAAKFAGSQAGVSTVAACS
        RLPRLPAAKFAGSQAGVSTVAACS
Subjt:  RLPRLPAAKFAGSQAGVSTVAACS

A0A6J1CC83 uncharacterized protein LOC111009386

9.0e-23

58.97

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Query:  MLADFHHSS--SFAHKLKSSIGCFRA--------SDQPSTKSPCSWFKSTAAEFPDLLDRCRYLVARIGRGGRRRYHASPDFTYDSSSYALNFEDD-SRY
        ML + ++SS  SF HKLKSSI CFRA         D+ S +SP S  KSTA+E  +L   CR LVARIGR  RRRYH S DF YD SSYALNFED+ +RY
Subjt:  MLADFHHSS--SFAHKLKSSIGCFRA--------SDQPSTKSPCSWFKSTAAEFPDLLDRCRYLVARIGRGGRRRYHASPDFTYDSSSYALNFEDD-SRY

Query:  DDEFPLRNFAARLPRLP
        DD+FP+R+FA+RLP  P
Subjt:  DDEFPLRNFAARLPRLP

A0A6J1HE78 uncharacterized protein LOC111462741

7.4e-33

62.88

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Query:  MLADFHHSSSFAHKLKSSIGCFRA------SDQPS---TKSPCSWFKSTAAEFPDLLDRCRYLVARIGRGGRRRYHASPDFTYDSSSYALNFEDDSRYDD
        ML  FHHS +FA KLKSS  CF         D PS   T+SPCSWFKST  EF  +L RCRYL+ARI R  R+RY AS DF+YDSSSYALNFEDD R DD
Subjt:  MLADFHHSSSFAHKLKSSIGCFRA------SDQPS---TKSPCSWFKSTAAEFPDLLDRCRYLVARIGRGGRRRYHASPDFTYDSSSYALNFEDDSRYDD

Query:  EFPLRNFAARLP-----RLPAAKFAGSQAGVS
        EFP RNF AR P     R+PAAKFAGS+ G+S
Subjt:  EFPLRNFAARLP-----RLPAAKFAGSQAGVS

A0A6J1J1H3 uncharacterized protein LOC111480417

5.8e-22

56.52

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Query:  MLADFHHSSSFAHKLKSSIGCFR--------ASDQPSTKSPCSWFKSTAAEFPDLLDRCRYLVARIGRGGRRRYHASPDFTYDSSSYALNFEDDS-RYDD
        M+ + +H  SF  KLKSSI CFR        + D  S ++P S  KS AAEFP++   CR LVARIGR  RRRYH S DF YD SSYALNFED+  R DD
Subjt:  MLADFHHSSSFAHKLKSSIGCFR--------ASDQPSTKSPCSWFKSTAAEFPDLLDRCRYLVARIGRGGRRRYHASPDFTYDSSSYALNFEDDS-RYDD

Query:  EFPLRNFAARLPRLP
        EFP+R+FA+RLP  P
Subjt:  EFPLRNFAARLPRLP

A0A6J1K7R1 uncharacterized protein LOC111492424

1.6e-32

62.88

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Query:  MLADFHHSSSFAHKLKSSIGCFRA------SDQPS---TKSPCSWFKSTAAEFPDLLDRCRYLVARIGRGGRRRYHASPDFTYDSSSYALNFEDDSRYDD
        ML  FHHS +FA KLKSS  CF         D PS   TKSPCSWFKST  EF  +L RCRYL+ARI R  R+RY AS DFTYDSSSYALNF+DD R DD
Subjt:  MLADFHHSSSFAHKLKSSIGCFRA------SDQPS---TKSPCSWFKSTAAEFPDLLDRCRYLVARIGRGGRRRYHASPDFTYDSSSYALNFEDDSRYDD

Query:  EFPLRNFAARLP-----RLPAAKFAGSQAGVS
        EFP R+F AR P     R PAAKFAGS+ G+S
Subjt:  EFPLRNFAARLP-----RLPAAKFAGSQAGVS

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT5G11070.1 unknown protein

4.2e-12

38.21

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Query:  HKLKSSIGCFRAS------------DQPSTKSPCSWFKSTAAEFPDLLDRCRYLVARIGRGGR----------RRYHASP----DFTYDSSSYALNFEDD
        H+++S I C  A+            +Q + +SP  W KSTA E  +L DRCR + +RI    R            +H S     DF+YD  SYALNFED+
Subjt:  HKLKSSIGCFRAS------------DQPSTKSPCSWFKSTAAEFPDLLDRCRYLVARIGRGGR----------RRYHASP----DFTYDSSSYALNFEDD

Query:  SRYDDEFPLRNFAARLPRLPAAK
         R DD+    NF ARLP+ P  K
Subjt:  SRYDDEFPLRNFAARLPRLPAAK

AT5G35090.1 unknown protein

8.1e-08

35.11

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Query:  HHSSSFAHKLKSSIGCFRASDQPSTKSP-CSWFKSTAAEFPDLL----DRCRYLVARIGRG-------GRRRYHASPDFTYDSSSYALNFE--DDSRYDD
        HH  +    L SS      + + ST+SP     K+ +      L    ++C+ L+ R+G G       G+     + DF YD SSYALNF+  D+    D
Subjt:  HHSSSFAHKLKSSIGCFRASDQPSTKSP-CSWFKSTAAEFPDLL----DRCRYLVARIGRG-------GRRRYHASPDFTYDSSSYALNFE--DDSRYDD

Query:  EFPLRNFAARLPRLP--AAKFAGSQAGVSTV
         FPLRNF+ARLP  P  +AK A S   V  +
Subjt:  EFPLRNFAARLPRLP--AAKFAGSQAGVSTV

Sequences

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CDS sequence

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ATGTTGGCCGATTTTCATCACTCTTCCTCCTTCGCTCACAAGCTCAAGTCCTCCATCGGCTGCTTCCGCGCCTCCGACCAGCCGTCGACCAAATCGCCGTGTTCCTGGTT
CAAATCTACGGCCGCTGAATTCCCCGACTTACTTGACCGCTGCCGCTATCTCGTCGCTCGGATCGGTCGCGGCGGCCGGAGAAGGTACCACGCCTCCCCTGACTTTACCT
ACGATTCTTCCAGCTACGCGCTTAATTTTGAGGACGATTCCCGCTACGACGATGAATTTCCGCTCAGAAATTTCGCCGCCAGGTTGCCGCGCCTTCCGGCAGCCAAATTT
GCCGGATCTCAAGCCGGAGTCAGTACCGTTGCTGCGTGTAGT

mRNA sequence

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Protein sequence

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MLADFHHSSSFAHKLKSSIGCFRASDQPSTKSPCSWFKSTAAEFPDLLDRCRYLVARIGRGGRRRYHASPDFTYDSSSYALNFEDDSRYDDEFPLRNFAARLPRLPAAKF
AGSQAGVSTVAACS

MS001339 (gene) of Bitter gourd (TR) v1 genome