; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS001353 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS001353
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionPoly(A)-specific ribonuclease
Genome locationscaffold36:3442173..3442994
RNA-Seq ExpressionMS001353
SyntenyMS001353
Gene Ontology termsGO:0043928 - exonucleolytic catabolism of deadenylated mRNA (biological process)
GO:0090503 - RNA phosphodiester bond hydrolysis, exonucleolytic (biological process)
GO:0000932 - P-body (cellular component)
GO:0005634 - nucleus (cellular component)
GO:0030015 - CCR4-NOT core complex (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0004535 - poly(A)-specific ribonuclease activity (molecular function)
InterPro domainsIPR006941 - Ribonuclease CAF1
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR039637 - CCR4-NOT transcription complex subunit 7/8/Pop2


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TKY74785.1 CCR4-associated factor 1-like 7 [Spatholobus suberectus]2.7e-15194.46Show/hide
Query:  MSILPKGDSIQIREVWNDNLEEEFALIREIVDEFNYIAMDTEFPGVVLRPVGAFKNINDYNYQTLKDNVDMLKLIQLGLTFSDENGNLPTCGTDKFCIWQ
        MSILPKGDSIQIREVWNDNLEEEFALIREIVDE+NY+AMDTEFPGVVLRPVG FKNINDYNYQTLKDNVDMLKLIQLGLTFSDE+GNLPTCGTD FCIWQ
Subjt:  MSILPKGDSIQIREVWNDNLEEEFALIREIVDEFNYIAMDTEFPGVVLRPVGAFKNINDYNYQTLKDNVDMLKLIQLGLTFSDENGNLPTCGTDKFCIWQ

Query:  FNFREFNVSEDIFASDSIELLRQCGIDFKKNNEEGIDVNRFGELLMSSGVVLNDGVNWVTFHSGYDFGYLLKLLTCRTLPDTQAGFFDLINIYFPMVYDI
        FNFREFN+SEDIFASDSIELLRQCGIDFKKNNE+GIDVNRFGELLMSSG+VLND V+WVTFHSGYDFGYLLKLLTCR+LPDTQAGFFDLI IYFPMVYDI
Subjt:  FNFREFNVSEDIFASDSIELLRQCGIDFKKNNEEGIDVNRFGELLMSSGVVLNDGVNWVTFHSGYDFGYLLKLLTCRTLPDTQAGFFDLINIYFPMVYDI

Query:  KHLMKFCNSLHGGLNKLAELLEVERIGVCHQAGSDSLLTACTFRKLRDTFFNGSTKKYAGVLYGLGVESGQ
        KHLMKFCNSLHGGLNKLAELLEVER+GVCHQAGSDSLLT+CTFRKLRDTFFNGST+KYAGVLYGLGVESGQ
Subjt:  KHLMKFCNSLHGGLNKLAELLEVERIGVCHQAGSDSLLTACTFRKLRDTFFNGSTKKYAGVLYGLGVESGQ

XP_010089956.1 probable CCR4-associated factor 1 homolog 7 [Morus notabilis]3.6e-15193.12Show/hide
Query:  MSILPK--GDSIQIREVWNDNLEEEFALIREIVDEFNYIAMDTEFPGVVLRPVGAFKNINDYNYQTLKDNVDMLKLIQLGLTFSDENGNLPTCGTDKFCI
        MSIL K  GDSIQIREVWNDNLEEEFALIREIVD++NY+AMDTEFPGVVLRPVG FKNINDYNYQTLKDNVDMLKLIQLGLTFSDENGNLPTCGTDKFCI
Subjt:  MSILPK--GDSIQIREVWNDNLEEEFALIREIVDEFNYIAMDTEFPGVVLRPVGAFKNINDYNYQTLKDNVDMLKLIQLGLTFSDENGNLPTCGTDKFCI

Query:  WQFNFREFNVSEDIFASDSIELLRQCGIDFKKNNEEGIDVNRFGELLMSSGVVLNDGVNWVTFHSGYDFGYLLKLLTCRTLPDTQAGFFDLINIYFPMVY
        WQFNFREFN+SEDIFASDSIELLRQCGIDFKKNNE+GIDVNRFGELLMSSG+VLNDGV+WVTFHSGYDFGYLLKLLTC++LPDTQAGFFDLIN+YFPMVY
Subjt:  WQFNFREFNVSEDIFASDSIELLRQCGIDFKKNNEEGIDVNRFGELLMSSGVVLNDGVNWVTFHSGYDFGYLLKLLTCRTLPDTQAGFFDLINIYFPMVY

Query:  DIKHLMKFCNSLHGGLNKLAELLEVERIGVCHQAGSDSLLTACTFRKLRDTFFNGSTKKYAGVLYGLGVESGQRTN
        DIKHLMKFCNSLHGGLNKLAELLEVER+GVCHQAGSDSLLT+CTFRKLRDTFFNGST+KYAGVLYGLGVE+GQ TN
Subjt:  DIKHLMKFCNSLHGGLNKLAELLEVERIGVCHQAGSDSLLTACTFRKLRDTFFNGSTKKYAGVLYGLGVESGQRTN

XP_015572459.1 probable CCR4-associated factor 1 homolog 7 [Ricinus communis]2.7e-15192.67Show/hide
Query:  MSILPKGDSIQIREVWNDNLEEEFALIREIVDEFNYIAMDTEFPGVVLRPVGAFKNINDYNYQTLKDNVDMLKLIQLGLTFSDENGNLPTCGTDKFCIWQ
        MSI+PKGDSI IREVWNDNLEEEF LIREIVD+FNY+AMDTEFPGVVLRPVG FKNINDYNYQTLKDNVDMLKLIQLGLTFSDENGNLPTCGTDKFCIWQ
Subjt:  MSILPKGDSIQIREVWNDNLEEEFALIREIVDEFNYIAMDTEFPGVVLRPVGAFKNINDYNYQTLKDNVDMLKLIQLGLTFSDENGNLPTCGTDKFCIWQ

Query:  FNFREFNVSEDIFASDSIELLRQCGIDFKKNNEEGIDVNRFGELLMSSGVVLNDGVNWVTFHSGYDFGYLLKLLTCRTLPDTQAGFFDLINIYFPMVYDI
        FNFREFN+SEDIFASDSIELLRQCGIDFKKNNE+GIDVNRFGEL+MSSG+VLNDGV+WVTFHSGYDFGYLLKLLTCR+LPDTQAGFFDLIN YFPMVYDI
Subjt:  FNFREFNVSEDIFASDSIELLRQCGIDFKKNNEEGIDVNRFGELLMSSGVVLNDGVNWVTFHSGYDFGYLLKLLTCRTLPDTQAGFFDLINIYFPMVYDI

Query:  KHLMKFCNSLHGGLNKLAELLEVERIGVCHQAGSDSLLTACTFRKLRDTFFNGSTKKYAGVLYGLGVESGQRT
        KHLMKFCNSLHGGLNKLAELLEVER+G+CHQAGSDSLLT+CTFRKLRD FFNGST+KYAGVLYGLGVE+GQ T
Subjt:  KHLMKFCNSLHGGLNKLAELLEVERIGVCHQAGSDSLLTACTFRKLRDTFFNGSTKKYAGVLYGLGVESGQRT

XP_021686091.1 probable CCR4-associated factor 1 homolog 7 [Hevea brasiliensis]7.2e-15293.07Show/hide
Query:  MSILPKGDSIQIREVWNDNLEEEFALIREIVDEFNYIAMDTEFPGVVLRPVGAFKNINDYNYQTLKDNVDMLKLIQLGLTFSDENGNLPTCGTDKFCIWQ
        MSI+PKGDSIQIREVWNDNLEEEFALIREIVD FNY+AMDTEFPGVVLRPVG FKNINDYNYQTLKDNVDMLKLIQLGLTFSDENGNLPTCGTD FCIWQ
Subjt:  MSILPKGDSIQIREVWNDNLEEEFALIREIVDEFNYIAMDTEFPGVVLRPVGAFKNINDYNYQTLKDNVDMLKLIQLGLTFSDENGNLPTCGTDKFCIWQ

Query:  FNFREFNVSEDIFASDSIELLRQCGIDFKKNNEEGIDVNRFGELLMSSGVVLNDGVNWVTFHSGYDFGYLLKLLTCRTLPDTQAGFFDLINIYFPMVYDI
        FNFREFN+SEDIFASDSIELLRQCGIDFKKNNE+GIDVNRFGELLMSSG+VLNDGV+WVTFHSGYDFGYLLKLLTCR+LPDTQAGFFDLIN+YFP+VYDI
Subjt:  FNFREFNVSEDIFASDSIELLRQCGIDFKKNNEEGIDVNRFGELLMSSGVVLNDGVNWVTFHSGYDFGYLLKLLTCRTLPDTQAGFFDLINIYFPMVYDI

Query:  KHLMKFCNSLHGGLNKLAELLEVERIGVCHQAGSDSLLTACTFRKLRDTFFNGSTKKYAGVLYGLGVESGQRTN
        KHLMKFCNSLHGGLNKLAELLEVER+GVCHQAGSDSLLT+CTFRKLRD FF+GST+KYAGVLYGLGVE+GQ TN
Subjt:  KHLMKFCNSLHGGLNKLAELLEVERIGVCHQAGSDSLLTACTFRKLRDTFFNGSTKKYAGVLYGLGVESGQRTN

XP_022132308.1 probable CCR4-associated factor 1 homolog 7 [Momordica charantia]1.6e-159100Show/hide
Query:  MSILPKGDSIQIREVWNDNLEEEFALIREIVDEFNYIAMDTEFPGVVLRPVGAFKNINDYNYQTLKDNVDMLKLIQLGLTFSDENGNLPTCGTDKFCIWQ
        MSILPKGDSIQIREVWNDNLEEEFALIREIVDEFNYIAMDTEFPGVVLRPVGAFKNINDYNYQTLKDNVDMLKLIQLGLTFSDENGNLPTCGTDKFCIWQ
Subjt:  MSILPKGDSIQIREVWNDNLEEEFALIREIVDEFNYIAMDTEFPGVVLRPVGAFKNINDYNYQTLKDNVDMLKLIQLGLTFSDENGNLPTCGTDKFCIWQ

Query:  FNFREFNVSEDIFASDSIELLRQCGIDFKKNNEEGIDVNRFGELLMSSGVVLNDGVNWVTFHSGYDFGYLLKLLTCRTLPDTQAGFFDLINIYFPMVYDI
        FNFREFNVSEDIFASDSIELLRQCGIDFKKNNEEGIDVNRFGELLMSSGVVLNDGVNWVTFHSGYDFGYLLKLLTCRTLPDTQAGFFDLINIYFPMVYDI
Subjt:  FNFREFNVSEDIFASDSIELLRQCGIDFKKNNEEGIDVNRFGELLMSSGVVLNDGVNWVTFHSGYDFGYLLKLLTCRTLPDTQAGFFDLINIYFPMVYDI

Query:  KHLMKFCNSLHGGLNKLAELLEVERIGVCHQAGSDSLLTACTFRKLRDTFFNGSTKKYAGVLYGLGVESGQRTN
        KHLMKFCNSLHGGLNKLAELLEVERIGVCHQAGSDSLLTACTFRKLRDTFFNGSTKKYAGVLYGLGVESGQRTN
Subjt:  KHLMKFCNSLHGGLNKLAELLEVERIGVCHQAGSDSLLTACTFRKLRDTFFNGSTKKYAGVLYGLGVESGQRTN

TrEMBL top hitse value%identityAlignment
A0A2C9UB26 Poly(A)-specific ribonuclease3.0e-15192.7Show/hide
Query:  MSILPKGDSIQIREVWNDNLEEEFALIREIVDEFNYIAMDTEFPGVVLRPVGAFKNINDYNYQTLKDNVDMLKLIQLGLTFSDENGNLPTCGTDKFCIWQ
        MSI+PKGDSIQIREVWNDNLEEEFALIREIVD+FNY+AMDTEFPGVVLRPVG FKNINDYNYQTLKDNVDMLKLIQLGLTFSDE GNLP+CGTDK CIWQ
Subjt:  MSILPKGDSIQIREVWNDNLEEEFALIREIVDEFNYIAMDTEFPGVVLRPVGAFKNINDYNYQTLKDNVDMLKLIQLGLTFSDENGNLPTCGTDKFCIWQ

Query:  FNFREFNVSEDIFASDSIELLRQCGIDFKKNNEEGIDVNRFGELLMSSGVVLNDGVNWVTFHSGYDFGYLLKLLTCRTLPDTQAGFFDLINIYFPMVYDI
        FNFREFN+SEDIFASDSIELLRQCGIDFKKNNE+GIDVNRFGELLMSSG+VLNDGV+WVTFHSGYDFGYLLKLLTCR+LPDTQAGFFDLIN+YFPMVYDI
Subjt:  FNFREFNVSEDIFASDSIELLRQCGIDFKKNNEEGIDVNRFGELLMSSGVVLNDGVNWVTFHSGYDFGYLLKLLTCRTLPDTQAGFFDLINIYFPMVYDI

Query:  KHLMKFCNSLHGGLNKLAELLEVERIGVCHQAGSDSLLTACTFRKLRDTFFNGSTKKYAGVLYGLGVESGQRTN
        KHLMKFCNSLHGGLNKLAELLEVER+GVCHQAGSDSLLT+CTFRKLRD FF+GST+KYAGVLYGLGVE+GQ TN
Subjt:  KHLMKFCNSLHGGLNKLAELLEVERIGVCHQAGSDSLLTACTFRKLRDTFFNGSTKKYAGVLYGLGVESGQRTN

A0A2N9GHJ9 Poly(A)-specific ribonuclease1.7e-15193.07Show/hide
Query:  MSILPKGDSIQIREVWNDNLEEEFALIREIVDEFNYIAMDTEFPGVVLRPVGAFKNINDYNYQTLKDNVDMLKLIQLGLTFSDENGNLPTCGTDKFCIWQ
        MSILPKGDSIQIREVWNDNLEEEFALIREIVD +N+IAMDTEFPGVVLRPVG F+NINDYNYQTLKDNVDMLKLIQLGLTFSD NGNLPTCGTDKFC+WQ
Subjt:  MSILPKGDSIQIREVWNDNLEEEFALIREIVDEFNYIAMDTEFPGVVLRPVGAFKNINDYNYQTLKDNVDMLKLIQLGLTFSDENGNLPTCGTDKFCIWQ

Query:  FNFREFNVSEDIFASDSIELLRQCGIDFKKNNEEGIDVNRFGELLMSSGVVLNDGVNWVTFHSGYDFGYLLKLLTCRTLPDTQAGFFDLINIYFPMVYDI
        FNFREFNVS+DIFASDSIELL QCGIDFKKNNE+GIDVNRFGELLMSSG+VLNDGV+WVTFHSGYDFGYLLKLLTCR+LPDTQAGFFDLIN+YFPMVYDI
Subjt:  FNFREFNVSEDIFASDSIELLRQCGIDFKKNNEEGIDVNRFGELLMSSGVVLNDGVNWVTFHSGYDFGYLLKLLTCRTLPDTQAGFFDLINIYFPMVYDI

Query:  KHLMKFCNSLHGGLNKLAELLEVERIGVCHQAGSDSLLTACTFRKLRDTFFNGSTKKYAGVLYGLGVESGQRTN
        KHLMKFCNSLHGGLNKLAELL+VER+GVCHQAGSDSLLTACTFRKLRDTFFNGST+KYAGVLYGLGVE+GQ TN
Subjt:  KHLMKFCNSLHGGLNKLAELLEVERIGVCHQAGSDSLLTACTFRKLRDTFFNGSTKKYAGVLYGLGVESGQRTN

A0A6J1BVW9 Poly(A)-specific ribonuclease7.8e-160100Show/hide
Query:  MSILPKGDSIQIREVWNDNLEEEFALIREIVDEFNYIAMDTEFPGVVLRPVGAFKNINDYNYQTLKDNVDMLKLIQLGLTFSDENGNLPTCGTDKFCIWQ
        MSILPKGDSIQIREVWNDNLEEEFALIREIVDEFNYIAMDTEFPGVVLRPVGAFKNINDYNYQTLKDNVDMLKLIQLGLTFSDENGNLPTCGTDKFCIWQ
Subjt:  MSILPKGDSIQIREVWNDNLEEEFALIREIVDEFNYIAMDTEFPGVVLRPVGAFKNINDYNYQTLKDNVDMLKLIQLGLTFSDENGNLPTCGTDKFCIWQ

Query:  FNFREFNVSEDIFASDSIELLRQCGIDFKKNNEEGIDVNRFGELLMSSGVVLNDGVNWVTFHSGYDFGYLLKLLTCRTLPDTQAGFFDLINIYFPMVYDI
        FNFREFNVSEDIFASDSIELLRQCGIDFKKNNEEGIDVNRFGELLMSSGVVLNDGVNWVTFHSGYDFGYLLKLLTCRTLPDTQAGFFDLINIYFPMVYDI
Subjt:  FNFREFNVSEDIFASDSIELLRQCGIDFKKNNEEGIDVNRFGELLMSSGVVLNDGVNWVTFHSGYDFGYLLKLLTCRTLPDTQAGFFDLINIYFPMVYDI

Query:  KHLMKFCNSLHGGLNKLAELLEVERIGVCHQAGSDSLLTACTFRKLRDTFFNGSTKKYAGVLYGLGVESGQRTN
        KHLMKFCNSLHGGLNKLAELLEVERIGVCHQAGSDSLLTACTFRKLRDTFFNGSTKKYAGVLYGLGVESGQRTN
Subjt:  KHLMKFCNSLHGGLNKLAELLEVERIGVCHQAGSDSLLTACTFRKLRDTFFNGSTKKYAGVLYGLGVESGQRTN

B9RNX3 Poly(A)-specific ribonuclease1.3e-15192.67Show/hide
Query:  MSILPKGDSIQIREVWNDNLEEEFALIREIVDEFNYIAMDTEFPGVVLRPVGAFKNINDYNYQTLKDNVDMLKLIQLGLTFSDENGNLPTCGTDKFCIWQ
        MSI+PKGDSI IREVWNDNLEEEF LIREIVD+FNY+AMDTEFPGVVLRPVG FKNINDYNYQTLKDNVDMLKLIQLGLTFSDENGNLPTCGTDKFCIWQ
Subjt:  MSILPKGDSIQIREVWNDNLEEEFALIREIVDEFNYIAMDTEFPGVVLRPVGAFKNINDYNYQTLKDNVDMLKLIQLGLTFSDENGNLPTCGTDKFCIWQ

Query:  FNFREFNVSEDIFASDSIELLRQCGIDFKKNNEEGIDVNRFGELLMSSGVVLNDGVNWVTFHSGYDFGYLLKLLTCRTLPDTQAGFFDLINIYFPMVYDI
        FNFREFN+SEDIFASDSIELLRQCGIDFKKNNE+GIDVNRFGEL+MSSG+VLNDGV+WVTFHSGYDFGYLLKLLTCR+LPDTQAGFFDLIN YFPMVYDI
Subjt:  FNFREFNVSEDIFASDSIELLRQCGIDFKKNNEEGIDVNRFGELLMSSGVVLNDGVNWVTFHSGYDFGYLLKLLTCRTLPDTQAGFFDLINIYFPMVYDI

Query:  KHLMKFCNSLHGGLNKLAELLEVERIGVCHQAGSDSLLTACTFRKLRDTFFNGSTKKYAGVLYGLGVESGQRT
        KHLMKFCNSLHGGLNKLAELLEVER+G+CHQAGSDSLLT+CTFRKLRD FFNGST+KYAGVLYGLGVE+GQ T
Subjt:  KHLMKFCNSLHGGLNKLAELLEVERIGVCHQAGSDSLLTACTFRKLRDTFFNGSTKKYAGVLYGLGVESGQRT

W9QRX8 Poly(A)-specific ribonuclease1.7e-15193.12Show/hide
Query:  MSILPK--GDSIQIREVWNDNLEEEFALIREIVDEFNYIAMDTEFPGVVLRPVGAFKNINDYNYQTLKDNVDMLKLIQLGLTFSDENGNLPTCGTDKFCI
        MSIL K  GDSIQIREVWNDNLEEEFALIREIVD++NY+AMDTEFPGVVLRPVG FKNINDYNYQTLKDNVDMLKLIQLGLTFSDENGNLPTCGTDKFCI
Subjt:  MSILPK--GDSIQIREVWNDNLEEEFALIREIVDEFNYIAMDTEFPGVVLRPVGAFKNINDYNYQTLKDNVDMLKLIQLGLTFSDENGNLPTCGTDKFCI

Query:  WQFNFREFNVSEDIFASDSIELLRQCGIDFKKNNEEGIDVNRFGELLMSSGVVLNDGVNWVTFHSGYDFGYLLKLLTCRTLPDTQAGFFDLINIYFPMVY
        WQFNFREFN+SEDIFASDSIELLRQCGIDFKKNNE+GIDVNRFGELLMSSG+VLNDGV+WVTFHSGYDFGYLLKLLTC++LPDTQAGFFDLIN+YFPMVY
Subjt:  WQFNFREFNVSEDIFASDSIELLRQCGIDFKKNNEEGIDVNRFGELLMSSGVVLNDGVNWVTFHSGYDFGYLLKLLTCRTLPDTQAGFFDLINIYFPMVY

Query:  DIKHLMKFCNSLHGGLNKLAELLEVERIGVCHQAGSDSLLTACTFRKLRDTFFNGSTKKYAGVLYGLGVESGQRTN
        DIKHLMKFCNSLHGGLNKLAELLEVER+GVCHQAGSDSLLT+CTFRKLRDTFFNGST+KYAGVLYGLGVE+GQ TN
Subjt:  DIKHLMKFCNSLHGGLNKLAELLEVERIGVCHQAGSDSLLTACTFRKLRDTFFNGSTKKYAGVLYGLGVESGQRTN

SwissProt top hitse value%identityAlignment
Q08BM8 CCR4-NOT transcription complex subunit 73.7e-8257.09Show/hide
Query:  SIQIREVWNDNLEEEFALIREIVDEFNYIAMDTEFPGVVLRPVGAFKNINDYNYQTLKDNVDMLKLIQLGLTFSDENGNLPTCGTDKFCIWQFNFREFNV
        S +I EVW  NLEEE   IR++  +FNYIAMDTEFPGVV RP+G F++  DY YQ L+ NVD+LK+IQLGLTF +E G  P  GT     WQFNF+ FN+
Subjt:  SIQIREVWNDNLEEEFALIREIVDEFNYIAMDTEFPGVVLRPVGAFKNINDYNYQTLKDNVDMLKLIQLGLTFSDENGNLPTCGTDKFCIWQFNFREFNV

Query:  SEDIFASDSIELLRQCGIDFKKNNEEGIDVNRFGELLMSSGVVLNDGVNWVTFHSGYDFGYLLKLLTCRTLPDTQAGFFDLINIYFPMVYDIKHLMKFCN
        +ED++A DSIELL   GI FKK+ EEGI+   F ELLM+SGVVL +GV W++FHSGYDFGYL+K+L+   LPD +  FF+++ ++FP++YD+K+LMK C 
Subjt:  SEDIFASDSIELLRQCGIDFKKNNEEGIDVNRFGELLMSSGVVLNDGVNWVTFHSGYDFGYLLKLLTCRTLPDTQAGFFDLINIYFPMVYDIKHLMKFCN

Query:  SLHGGLNKLAELLEVERIGVCHQAGSDSLLTACTFRKLRDTFFNG--STKKYAGVLYGLGVESGQRTN
        +L GGL ++AE LE+ERIG  HQAGSDSLLT   F K+R+ FF       KY G LYGLG  S    N
Subjt:  SLHGGLNKLAELLEVERIGVCHQAGSDSLLTACTFRKLRDTFFNG--STKKYAGVLYGLGVESGQRTN

Q9LEU4 Probable CCR4-associated factor 1 homolog 103.3e-12376.87Show/hide
Query:  KGDSIQIREVWNDNLEEEFALIREIVDEFNYIAMDTEFPGVVLRPVGAFKNINDYNYQTLKDNVDMLKLIQLGLTFSDENGNLPTCGTDKFCIWQFNFRE
        K DSI IREVW+ NL EEFALIREIVD+F+YIAMDTEFPGVVL+PV  FK  ND NY+TLK+NVD+LKLIQ+GLTFSDENGNLPTCGTDKFCIWQFNFRE
Subjt:  KGDSIQIREVWNDNLEEEFALIREIVDEFNYIAMDTEFPGVVLRPVGAFKNINDYNYQTLKDNVDMLKLIQLGLTFSDENGNLPTCGTDKFCIWQFNFRE

Query:  FNVSEDIFASDSIELLRQCGIDFKKNNEEGIDVNRFGELLMSSGVVLNDGVNWVTFHSGYDFGYLLKLLTCRTLPDTQAGFFDLINIYFPMVYDIKHLMK
        FN+ EDI+AS+SIELLRQCGIDFKKN E+GIDV RFGEL+MSSG+VLND ++WVTFH GYDFGYL+KLLTC+ LP  QA FF L+ +YFP VYDIKHLM 
Subjt:  FNVSEDIFASDSIELLRQCGIDFKKNNEEGIDVNRFGELLMSSGVVLNDGVNWVTFHSGYDFGYLLKLLTCRTLPDTQAGFFDLINIYFPMVYDIKHLMK

Query:  FCNSLHGGLNKLAELLEVERIGVCHQAGSDSLLTACTFRKLRDTFFNGSTKKYAGVLYGLGVESGQRT
        FCN L GGLN+LAEL+ VER+G+CHQAGSDSLLT  +FRKL++ +F GST+KY GVLYGLGVE G  T
Subjt:  FCNSLHGGLNKLAELLEVERIGVCHQAGSDSLLTACTFRKLRDTFFNGSTKKYAGVLYGLGVESGQRT

Q9S9P2 Probable CCR4-associated factor 1 homolog 28.2e-9864.77Show/hide
Query:  DSIQIREVWNDNLEEEFALIREIVDEFNYIAMDTEFPGVVLRPVGAFKNIN------DYNYQTLKDNVDMLKLIQLGLTFSDENGNLPTCGTDKFCIWQF
        D+I+IREVWN NLE+E ALI + +D+F Y+AMDTEFPG+V + V A  N N      +YNY TLK NV+MLKLIQLGLT SDE GNLPTCGT+K CIWQF
Subjt:  DSIQIREVWNDNLEEEFALIREIVDEFNYIAMDTEFPGVVLRPVGAFKNIN------DYNYQTLKDNVDMLKLIQLGLTFSDENGNLPTCGTDKFCIWQF

Query:  NFREFNVSEDIFASDSIELLRQCGIDFKKNNEEGIDVNRFGELLMSSGVVLNDGVNWVTFHSGYDFGYLLKLLTCRTLPDTQAGFFDLINIYFPMVYDIK
        NFREFNV  D+FA DSIELLR+  ID +KNNE G+D  RF ELLM SGVVLND ++WVTFH GYDFGYLLKLL+ + LP+  + FFD +  +FP+VYDIK
Subjt:  NFREFNVSEDIFASDSIELLRQCGIDFKKNNEEGIDVNRFGELLMSSGVVLNDGVNWVTFHSGYDFGYLLKLLTCRTLPDTQAGFFDLINIYFPMVYDIK

Query:  HLMKFCNSLHGGLNKLAELLEVERIGVCHQAGSDSLLTACTFRKLRDTFFNGSTKKYAGVLYGL
        +LM FC +L+GGL K+AELL V+R+G+ HQAGSDSLLT  TF K+++ FF GS  KY+G L+GL
Subjt:  HLMKFCNSLHGGLNKLAELLEVERIGVCHQAGSDSLLTACTFRKLRDTFFNGSTKKYAGVLYGL

Q9SAI2 Probable CCR4-associated factor 1 homolog 67.8e-12575.65Show/hide
Query:  MSILPKGDSIQIREVWNDNLEEEFALIREIVDEFNYIAMDTEFPGVVLRPVGAFKNINDYNYQTLKDNVDMLKLIQLGLTFSDENGNLPTCGTDKFCIWQ
        MS+  K DSIQIREVWNDNL+EE  LIR++VD+F Y+AMDTEFPG+V+RPVG FK+  DY+Y+TLK NV++LK+IQLGLTFS+E GNLPTCGTDK+CIWQ
Subjt:  MSILPKGDSIQIREVWNDNLEEEFALIREIVDEFNYIAMDTEFPGVVLRPVGAFKNINDYNYQTLKDNVDMLKLIQLGLTFSDENGNLPTCGTDKFCIWQ

Query:  FNFREFNVSEDIFASDSIELLRQCGIDFKKNNEEGIDVNRFGELLMSSGVVLNDGVNWVTFHSGYDFGYLLKLLTCRTLPDTQAGFFDLINIYFPMVYDI
        FNFREF++  DIFA DSIELL+Q GID  KN  +GID  RF ELLMSSG+VLN+ V+WVTFHSGYDFGYLLKLLTC+ LPD+Q  FF LIN+YFP VYDI
Subjt:  FNFREFNVSEDIFASDSIELLRQCGIDFKKNNEEGIDVNRFGELLMSSGVVLNDGVNWVTFHSGYDFGYLLKLLTCRTLPDTQAGFFDLINIYFPMVYDI

Query:  KHLMKFCNSLHGGLNKLAELLEVERIGVCHQAGSDSLLTACTFRKLRDTFFNGSTKKYAGVLYGLGVESGQ
        KHLMKFCNSLHGGLNKLAELLEVER+G+CHQAGSDSLLT+CTFRKL++ FF G   KY+GVLYGLGVE+GQ
Subjt:  KHLMKFCNSLHGGLNKLAELLEVERIGVCHQAGSDSLLTACTFRKLRDTFFNGSTKKYAGVLYGLGVESGQ

Q9SKZ2 Probable CCR4-associated factor 1 homolog 71.9e-12676.47Show/hide
Query:  MSILPKGDSIQIREVWNDNLEEEFALIREIVDEFNYIAMDTEFPGVVLRPVGAFKNINDYNYQTLKDNVDMLKLIQLGLTFSDENGNLPTCGTD-KFCIW
        MS+  K DSIQIREVWNDNLE E ALIRE+VD+F ++AMDTEFPG+V RPVG FK   +Y+Y+TLK NV++LK+IQLGLTFSDE GNLPTCGTD K+CIW
Subjt:  MSILPKGDSIQIREVWNDNLEEEFALIREIVDEFNYIAMDTEFPGVVLRPVGAFKNINDYNYQTLKDNVDMLKLIQLGLTFSDENGNLPTCGTD-KFCIW

Query:  QFNFREFNVSEDIFASDSIELLRQCGIDFKKNNEEGIDVNRFGELLMSSGVVLNDGVNWVTFHSGYDFGYLLKLLTCRTLPDTQAGFFDLINIYFPMVYD
        QFNFREF++  DI+A+DSIELLRQ GIDF KNNE GID  RF ELLMSSG+VLN+ V+WVTFHSGYDFGYLLKLLTC+ LP+TQ GFF++I++YFP VYD
Subjt:  QFNFREFNVSEDIFASDSIELLRQCGIDFKKNNEEGIDVNRFGELLMSSGVVLNDGVNWVTFHSGYDFGYLLKLLTCRTLPDTQAGFFDLINIYFPMVYD

Query:  IKHLMKFCNSLHGGLNKLAELLEVERIGVCHQAGSDSLLTACTFRKLRDTFFNGSTKKYAGVLYGLGVESGQ
        IKHLMKFCNSLHGGLNKLAELL+VER+G+CHQAGSDSLLT+CTFRKL++ FF GS +KY+GVLYGLGVE+GQ
Subjt:  IKHLMKFCNSLHGGLNKLAELLEVERIGVCHQAGSDSLLTACTFRKLRDTFFNGSTKKYAGVLYGLGVESGQ

Arabidopsis top hitse value%identityAlignment
AT1G80780.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein5.6e-12675.65Show/hide
Query:  MSILPKGDSIQIREVWNDNLEEEFALIREIVDEFNYIAMDTEFPGVVLRPVGAFKNINDYNYQTLKDNVDMLKLIQLGLTFSDENGNLPTCGTDKFCIWQ
        MS+  K DSIQIREVWNDNL+EE  LIR++VD+F Y+AMDTEFPG+V+RPVG FK+  DY+Y+TLK NV++LK+IQLGLTFS+E GNLPTCGTDK+CIWQ
Subjt:  MSILPKGDSIQIREVWNDNLEEEFALIREIVDEFNYIAMDTEFPGVVLRPVGAFKNINDYNYQTLKDNVDMLKLIQLGLTFSDENGNLPTCGTDKFCIWQ

Query:  FNFREFNVSEDIFASDSIELLRQCGIDFKKNNEEGIDVNRFGELLMSSGVVLNDGVNWVTFHSGYDFGYLLKLLTCRTLPDTQAGFFDLINIYFPMVYDI
        FNFREF++  DIFA DSIELL+Q GID  KN  +GID  RF ELLMSSG+VLN+ V+WVTFHSGYDFGYLLKLLTC+ LPD+Q  FF LIN+YFP VYDI
Subjt:  FNFREFNVSEDIFASDSIELLRQCGIDFKKNNEEGIDVNRFGELLMSSGVVLNDGVNWVTFHSGYDFGYLLKLLTCRTLPDTQAGFFDLINIYFPMVYDI

Query:  KHLMKFCNSLHGGLNKLAELLEVERIGVCHQAGSDSLLTACTFRKLRDTFFNGSTKKYAGVLYGLGVESGQ
        KHLMKFCNSLHGGLNKLAELLEVER+G+CHQAGSDSLLT+CTFRKL++ FF G   KY+GVLYGLGVE+GQ
Subjt:  KHLMKFCNSLHGGLNKLAELLEVERIGVCHQAGSDSLLTACTFRKLRDTFFNGSTKKYAGVLYGLGVESGQ

AT1G80780.2 Polynucleotidyl transferase, ribonuclease H-like superfamily protein5.6e-12675.65Show/hide
Query:  MSILPKGDSIQIREVWNDNLEEEFALIREIVDEFNYIAMDTEFPGVVLRPVGAFKNINDYNYQTLKDNVDMLKLIQLGLTFSDENGNLPTCGTDKFCIWQ
        MS+  K DSIQIREVWNDNL+EE  LIR++VD+F Y+AMDTEFPG+V+RPVG FK+  DY+Y+TLK NV++LK+IQLGLTFS+E GNLPTCGTDK+CIWQ
Subjt:  MSILPKGDSIQIREVWNDNLEEEFALIREIVDEFNYIAMDTEFPGVVLRPVGAFKNINDYNYQTLKDNVDMLKLIQLGLTFSDENGNLPTCGTDKFCIWQ

Query:  FNFREFNVSEDIFASDSIELLRQCGIDFKKNNEEGIDVNRFGELLMSSGVVLNDGVNWVTFHSGYDFGYLLKLLTCRTLPDTQAGFFDLINIYFPMVYDI
        FNFREF++  DIFA DSIELL+Q GID  KN  +GID  RF ELLMSSG+VLN+ V+WVTFHSGYDFGYLLKLLTC+ LPD+Q  FF LIN+YFP VYDI
Subjt:  FNFREFNVSEDIFASDSIELLRQCGIDFKKNNEEGIDVNRFGELLMSSGVVLNDGVNWVTFHSGYDFGYLLKLLTCRTLPDTQAGFFDLINIYFPMVYDI

Query:  KHLMKFCNSLHGGLNKLAELLEVERIGVCHQAGSDSLLTACTFRKLRDTFFNGSTKKYAGVLYGLGVESGQ
        KHLMKFCNSLHGGLNKLAELLEVER+G+CHQAGSDSLLT+CTFRKL++ FF G   KY+GVLYGLGVE+GQ
Subjt:  KHLMKFCNSLHGGLNKLAELLEVERIGVCHQAGSDSLLTACTFRKLRDTFFNGSTKKYAGVLYGLGVESGQ

AT1G80780.3 Polynucleotidyl transferase, ribonuclease H-like superfamily protein1.0e-12475.46Show/hide
Query:  MSILPKGDSIQIREVWNDNLEEEFALIREIVDEFNYIAMDTEFPGVVLRPVGAFKNINDYNYQTLKDNVDMLKLIQLGLTFSDENGNLPTCGTDKFCIWQ
        MS+  K DSIQIREVWNDNL+EE  LIR++VD+F Y+AMDTEFPG+V+RPVG FK+  DY+Y+TLK NV++LK+IQLGLTFS+E GNLPTCGTDK+CIWQ
Subjt:  MSILPKGDSIQIREVWNDNLEEEFALIREIVDEFNYIAMDTEFPGVVLRPVGAFKNINDYNYQTLKDNVDMLKLIQLGLTFSDENGNLPTCGTDKFCIWQ

Query:  FNFREFNVSEDIFASDSIELLRQCGIDFKKNNEEGIDVNRFGELLMSSGVVLNDGVNWVTFHSGYDFGYLLKLLTCRTLPDTQAGFFDLINIYFPMVYDI
        FNFREF++  DIFA DSIELL+Q GID  KN  +GID  RF ELLMSSG+VLN+ V+WVTFHSGYDFGYLLKLLTC+ LPD+Q  FF LIN+YFP VYDI
Subjt:  FNFREFNVSEDIFASDSIELLRQCGIDFKKNNEEGIDVNRFGELLMSSGVVLNDGVNWVTFHSGYDFGYLLKLLTCRTLPDTQAGFFDLINIYFPMVYDI

Query:  KHLMKFCNSLHGGLNKLAELLEVERIGVCHQAGSDSLLTACTFRKLRDTFFNGSTKKYAGVLYGLGVES
        KHLMKFCNSLHGGLNKLAELLEVER+G+CHQAGSDSLLT+CTFRKL++ FF G   KY+GVLYGLGVE+
Subjt:  KHLMKFCNSLHGGLNKLAELLEVERIGVCHQAGSDSLLTACTFRKLRDTFFNGSTKKYAGVLYGLGVES

AT2G32070.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein1.3e-12776.47Show/hide
Query:  MSILPKGDSIQIREVWNDNLEEEFALIREIVDEFNYIAMDTEFPGVVLRPVGAFKNINDYNYQTLKDNVDMLKLIQLGLTFSDENGNLPTCGTD-KFCIW
        MS+  K DSIQIREVWNDNLE E ALIRE+VD+F ++AMDTEFPG+V RPVG FK   +Y+Y+TLK NV++LK+IQLGLTFSDE GNLPTCGTD K+CIW
Subjt:  MSILPKGDSIQIREVWNDNLEEEFALIREIVDEFNYIAMDTEFPGVVLRPVGAFKNINDYNYQTLKDNVDMLKLIQLGLTFSDENGNLPTCGTD-KFCIW

Query:  QFNFREFNVSEDIFASDSIELLRQCGIDFKKNNEEGIDVNRFGELLMSSGVVLNDGVNWVTFHSGYDFGYLLKLLTCRTLPDTQAGFFDLINIYFPMVYD
        QFNFREF++  DI+A+DSIELLRQ GIDF KNNE GID  RF ELLMSSG+VLN+ V+WVTFHSGYDFGYLLKLLTC+ LP+TQ GFF++I++YFP VYD
Subjt:  QFNFREFNVSEDIFASDSIELLRQCGIDFKKNNEEGIDVNRFGELLMSSGVVLNDGVNWVTFHSGYDFGYLLKLLTCRTLPDTQAGFFDLINIYFPMVYD

Query:  IKHLMKFCNSLHGGLNKLAELLEVERIGVCHQAGSDSLLTACTFRKLRDTFFNGSTKKYAGVLYGLGVESGQ
        IKHLMKFCNSLHGGLNKLAELL+VER+G+CHQAGSDSLLT+CTFRKL++ FF GS +KY+GVLYGLGVE+GQ
Subjt:  IKHLMKFCNSLHGGLNKLAELLEVERIGVCHQAGSDSLLTACTFRKLRDTFFNGSTKKYAGVLYGLGVESGQ

AT5G10960.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein2.3e-12476.87Show/hide
Query:  KGDSIQIREVWNDNLEEEFALIREIVDEFNYIAMDTEFPGVVLRPVGAFKNINDYNYQTLKDNVDMLKLIQLGLTFSDENGNLPTCGTDKFCIWQFNFRE
        K DSI IREVW+ NL EEFALIREIVD+F+YIAMDTEFPGVVL+PV  FK  ND NY+TLK+NVD+LKLIQ+GLTFSDENGNLPTCGTDKFCIWQFNFRE
Subjt:  KGDSIQIREVWNDNLEEEFALIREIVDEFNYIAMDTEFPGVVLRPVGAFKNINDYNYQTLKDNVDMLKLIQLGLTFSDENGNLPTCGTDKFCIWQFNFRE

Query:  FNVSEDIFASDSIELLRQCGIDFKKNNEEGIDVNRFGELLMSSGVVLNDGVNWVTFHSGYDFGYLLKLLTCRTLPDTQAGFFDLINIYFPMVYDIKHLMK
        FN+ EDI+AS+SIELLRQCGIDFKKN E+GIDV RFGEL+MSSG+VLND ++WVTFH GYDFGYL+KLLTC+ LP  QA FF L+ +YFP VYDIKHLM 
Subjt:  FNVSEDIFASDSIELLRQCGIDFKKNNEEGIDVNRFGELLMSSGVVLNDGVNWVTFHSGYDFGYLLKLLTCRTLPDTQAGFFDLINIYFPMVYDIKHLMK

Query:  FCNSLHGGLNKLAELLEVERIGVCHQAGSDSLLTACTFRKLRDTFFNGSTKKYAGVLYGLGVESGQRT
        FCN L GGLN+LAEL+ VER+G+CHQAGSDSLLT  +FRKL++ +F GST+KY GVLYGLGVE G  T
Subjt:  FCNSLHGGLNKLAELLEVERIGVCHQAGSDSLLTACTFRKLRDTFFNGSTKKYAGVLYGLGVESGQRT


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCGATTTTACCCAAAGGCGATTCGATTCAAATCCGTGAGGTGTGGAACGACAATTTGGAGGAGGAGTTCGCACTTATCCGGGAAATTGTTGACGAGTTTAATTACAT
AGCCATGGATACCGAGTTTCCCGGCGTGGTGCTTCGCCCTGTGGGTGCCTTCAAGAATATCAACGACTACAACTATCAGACTCTCAAGGATAATGTTGATATGTTGAAGT
TGATTCAATTGGGTCTTACGTTCTCTGATGAGAATGGAAACCTCCCGACTTGTGGAACCGATAAGTTTTGCATTTGGCAGTTCAATTTCCGCGAGTTCAACGTTAGTGAA
GATATTTTTGCGAGTGATTCGATTGAGCTTCTGCGCCAGTGTGGTATTGATTTTAAGAAGAACAATGAAGAGGGTATTGATGTTAATCGCTTTGGTGAGCTTCTAATGTC
TTCTGGGGTTGTGTTAAACGATGGTGTTAACTGGGTCACGTTCCACAGTGGGTATGATTTTGGTTACTTGCTCAAATTGCTGACTTGCCGAACCTTGCCAGACACACAGG
CGGGATTTTTTGATTTGATCAACATCTATTTTCCCATGGTTTATGATATCAAGCATTTGATGAAGTTTTGCAACAGCCTCCATGGTGGGCTGAACAAGCTTGCAGAGTTA
TTAGAAGTGGAGAGGATTGGAGTTTGTCATCAAGCAGGATCAGACAGTCTGCTTACTGCTTGTACTTTTAGGAAGTTGAGGGATACCTTTTTCAATGGATCTACGAAAAA
ATACGCAGGTGTTTTGTATGGTCTTGGTGTTGAAAGTGGACAGCGTACTAAT
mRNA sequenceShow/hide mRNA sequence
ATGTCGATTTTACCCAAAGGCGATTCGATTCAAATCCGTGAGGTGTGGAACGACAATTTGGAGGAGGAGTTCGCACTTATCCGGGAAATTGTTGACGAGTTTAATTACAT
AGCCATGGATACCGAGTTTCCCGGCGTGGTGCTTCGCCCTGTGGGTGCCTTCAAGAATATCAACGACTACAACTATCAGACTCTCAAGGATAATGTTGATATGTTGAAGT
TGATTCAATTGGGTCTTACGTTCTCTGATGAGAATGGAAACCTCCCGACTTGTGGAACCGATAAGTTTTGCATTTGGCAGTTCAATTTCCGCGAGTTCAACGTTAGTGAA
GATATTTTTGCGAGTGATTCGATTGAGCTTCTGCGCCAGTGTGGTATTGATTTTAAGAAGAACAATGAAGAGGGTATTGATGTTAATCGCTTTGGTGAGCTTCTAATGTC
TTCTGGGGTTGTGTTAAACGATGGTGTTAACTGGGTCACGTTCCACAGTGGGTATGATTTTGGTTACTTGCTCAAATTGCTGACTTGCCGAACCTTGCCAGACACACAGG
CGGGATTTTTTGATTTGATCAACATCTATTTTCCCATGGTTTATGATATCAAGCATTTGATGAAGTTTTGCAACAGCCTCCATGGTGGGCTGAACAAGCTTGCAGAGTTA
TTAGAAGTGGAGAGGATTGGAGTTTGTCATCAAGCAGGATCAGACAGTCTGCTTACTGCTTGTACTTTTAGGAAGTTGAGGGATACCTTTTTCAATGGATCTACGAAAAA
ATACGCAGGTGTTTTGTATGGTCTTGGTGTTGAAAGTGGACAGCGTACTAAT
Protein sequenceShow/hide protein sequence
MSILPKGDSIQIREVWNDNLEEEFALIREIVDEFNYIAMDTEFPGVVLRPVGAFKNINDYNYQTLKDNVDMLKLIQLGLTFSDENGNLPTCGTDKFCIWQFNFREFNVSE
DIFASDSIELLRQCGIDFKKNNEEGIDVNRFGELLMSSGVVLNDGVNWVTFHSGYDFGYLLKLLTCRTLPDTQAGFFDLINIYFPMVYDIKHLMKFCNSLHGGLNKLAEL
LEVERIGVCHQAGSDSLLTACTFRKLRDTFFNGSTKKYAGVLYGLGVESGQRTN